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LOCUS XM_013260708 4921 bp mRNA linear INV 02-SEP-2023 (LOC106093612), transcript variant X2, mRNA. ACCESSION XM_013260708 VERSION XM_013260708.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260708.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4921 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4921 /gene="LOC106093612" /note="5'-3' exoribonuclease 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106093612" CDS 276..4694 /gene="LOC106093612" /codon_start=1 /product="5'-3' exoribonuclease 1" /protein_id="XP_013116162.2" /db_xref="GeneID:106093612" /translation="MGVPKFFRYISERYPCLSELAREQCVPDFDNLYLDMNGIIHNCS HPDDTNIHFNITEEDMFKDIFNYIDKLFFLIKPQKLFFMAIDGVAPRAKMNQQRSRRF RSAKEAETLERLALSRGEVREHERFDSNCITPGTEFMERLHEALRYFIKSKISADPMW QKCRVILSGHNAPGEGEHKIMDYIRYLKSQNDFDPNTRHCLYGLDADLIILGLCTHEL HFVVLREEVKFGRKNKKASVEETRFFLLHLRLLREYLELEFDELKQYPSFDIAKLIDD WVLMGFLVGNDFIPHLPFLNISSNALPLLYKTYKKVYPELRGNINENGSLNLERLEKY FEALSEVEFENFQENYADLKYFNTKQNGVDEAFDFDVSEINAEKVDDDLAALIESSKQ FLDDEEDLSDEEGQHITDEFENFKRNYYMNKLNQENSDSAYKKEQAICYITALQWILD YYYRGVRSWGWYYPHHYAPFISDLKNFKDHVIKFDMGKPFLPFQQLLAVLPAASKALL PTAYRDLMTSPQSELIDFYPEDFETDLNGKMNEWEAVVLIPFIDEKLLLQAMEPCDQN LSPDEYKRNQHGPMLQYDYNPESQGQSPGIYSLKALYHVYCTEKPFWSRDIMVPADRT VCKELPNAARSVFFPGFPTMKHLDYKFELRCARVKVFDYPARNENMILQPMARKNLDD VFAVAEQMLNQTVYIGWPHLIKAKVVGISNKEKYIDTDGIKDMEPKIYDLHLRAVQEH LMTRMGIEFADLSVLVHVRTYVGSSYICGSQGKVSLSEMWSTTTTAYPAQGVVSQIAV QNTLTNQVKKIEQLFPENSRIFFVGNPYYGSEGVVMNPMLVYECGRLKVNITVLPEPN FAEAKYIQNQLENEYIPSHQAAVQIGIQIKCLARLTGSVLVVKGARRPKSDLPNNLAK INIGLQFKYFKSNEELVGYTRRIHNQWFMSSKAIALVQSYVEKFPLIIEYLSTSNDRS DLLFEQDIFPNDVGEGKLEAIAAWLKDQPHSKAEKIACGSKTMEKEAVEKVLEAMEEL KTLPVKTVKLQVKPHLLLKPDVSLPSIYKPKRSIKLFDRVVVVKTTYMVPLGSKGTVI GVYPVSDPNPVRLECVRAVENFYEVLFDKTLPNGNDVHGIAEQRVYKVPESSVLLIFT QGNNNEQFYEAKLQLEESRNDSVKLKSQSVGNNTNTTTVVSNETKVPQIVQKGSNDFW MPSLNTKIKHSGNGGMTNRTTSSSGVANTATQEAQTNQLKILQNPLHLNQINDSVVTG TAECQEFQDGTHALKSLLGIVPSQSPLYQTQTSPNVSKAQLPKPPTSWRADAQKFPLP QTYPQLPLHQPPFSQGNAPVAVIGGNVIPLPTPTCKDQNPPQFVFNSNSLNQKGAFIP LQVARGNSQTSEAPVPGTALTINNSNIVSSVTASCATNVLTQNLSQLAVSTGGNEVNV SSGHPGATVTSVEKTAYGRKKPPRVPKIGAKFDVAY" polyA_site 4921 /gene="LOC106093612" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctactctttt acttcgttcc tcgaagaaac atttgcaaaa ttataaattt aatgattatt 61 aattgaattt ttgattttct caacttatta actatagttt aagaatcaaa atcctttaag 121 gagcaagaga acagacattt atatacagct attcaggaag tgaggacgac aacaagcttc 181 tggcacaact aattagcatt tgtgttgttt actacattgg aatacacatt ggtttgttca 241 cacaaccaac aggctaatta catacaacag caataatggg tgtaccgaaa ttcttccgat 301 acattagtga aaggtatcct tgccttagtg aattggcacg ggaacaatgt gttcccgatt 361 tcgataattt atacttggat atgaatggaa ttatacacaa ctgttcacat ccagatgaca 421 ccaacattca tttcaacatc accgaagagg atatgtttaa ggatattttt aactacattg 481 acaagttatt tttcttaatc aaaccacaaa aattattctt catggctata gatggcgtgg 541 cacctcgtgc caaaatgaat caacagcgta gtagacgctt tcgctcggcc aaagaagccg 601 aaactttgga acgtttagcc ctgagccggg gtgaggtgag agaacatgaa cggttcgata 661 gtaactgtat aacaccaggt actgaattca tggaacgttt gcatgaggct ttacgctact 721 tcataaaaag taaaattagt gctgatccta tgtggcaaaa gtgtagggtt atactgagcg 781 gtcataatgc tcctggagag ggtgaacata aaattatgga ttacatacgc tatctgaaat 841 ctcaaaatga ttttgatccc aacacaagac attgccttta tggtttagat gctgatttaa 901 taatattggg attatgcacg cacgaattgc atttcgtagt attgcgtgaa gaagtcaaat 961 ttggacgaaa gaataaaaaa gcctcagtcg aagagacgcg gttcttctta ttacatttgc 1021 gactgttgag ggaatactta gaactggaat tcgatgagtt aaaacaatat ccaagttttg 1081 acatagccaa acttattgat gattgggtgc tgatgggctt tcttgttggc aatgatttta 1141 taccacattt gccattccta aatatatcat cgaatgcatt acctctcctc tacaaaacat 1201 ataagaaagt ctatccggaa ttaagaggaa atataaatga gaatggcagc ctaaacttgg 1261 agcgtttgga aaaatacttt gaggctttat cagaggttga attcgaaaat ttccaagaaa 1321 actatgctga tctgaagtat tttaatacta aacagaatgg tgtcgatgag gcatttgact 1381 ttgatgtcag cgaaattaat gccgaaaagg ttgatgatga tttggcggca ctgattgaaa 1441 gtagtaaaca gttcttggat gacgaagaag atttgtctga tgaagaaggc cagcatatca 1501 cagacgaatt tgagaacttc aagcgcaact attacatgaa caaattgaat caggaaaata 1561 gtgacagtgc atataaaaag gaacaggcaa tttgctacat aacggccttg caatggatac 1621 tagactacta ttaccgagga gtgcgttcct ggggatggta ttacccacat cattatgcac 1681 catttataag cgatttgaag aactttaaag atcatgtaat taaatttgat atgggtaaac 1741 ctttcttacc ctttcaacag ttattggcag ttttgccggc agctagtaaa gcactattac 1801 ccacggcgta tagagatctc atgacgagtc cccaaagtga actaatagat ttttatcccg 1861 aagattttga aactgatctc aatggaaaaa tgaacgaatg ggaagcggtt gtgctcatac 1921 ctttcataga cgaaaaactc ttgttgcagg ctatggagcc atgcgatcaa aacttatcgc 1981 ctgacgaata taaacgcaat caacatggcc cgatgttgca gtatgattac aatcctgaat 2041 cgcaggggca atcccctggg atttattctc taaaggcttt gtaccatgtc tattgtactg 2101 aaaaaccttt ttggtcaagg gatataatgg taccagcaga ccgaactgta tgtaaagaat 2161 taccgaatgc tgcgcggtcg gtattctttc cgggatttcc tactatgaag catttagatt 2221 ataagtttga attgagatgt gctcgggtta aagtattcga ttatcctgca cgcaatgaaa 2281 atatgatatt gcagccaatg gctcgtaaaa atttggatga tgttttcgct gttgctgagc 2341 aaatgcttaa ccaaactgtt tacataggat ggccccactt gatcaaagct aaggttgtgg 2401 gaatatcaaa caaagaaaag tacatcgaca cggacggtat taaggatatg gagcctaaaa 2461 tatacgattt acacttgaga gctgtgcagg aacatttaat gacacgcatg ggtatagaat 2521 tcgcagattt gtcagtgctg gttcatgtgc gcacctatgt tggatcgtcg tacatttgtg 2581 gcagccaggg taaggtgtcg ctgagcgaaa tgtggagcac aacaacaaca gcttatccag 2641 cacaaggagt tgtctcacaa attgccgtgc aaaacacttt aaccaaccaa gtcaaaaaga 2701 tcgaacaact atttccggaa aatagtcgca tattctttgt tgggaatcct tactatggca 2761 gtgagggagt tgttatgaat cccatgttag tatacgaatg cggcagactc aaagtaaaca 2821 taactgtatt gcctgaacca aatttcgcag aagcaaaata catacaaaat cagctcgaaa 2881 atgagtacat accctcccat caagctgctg ttcaaattgg catacagata aagtgtctgg 2941 ctcgcctaac cggctccgtg ttggttgtaa agggagcccg acgtcccaaa tcagatcttc 3001 caaacaactt ggccaaaata aacataggtt tacaatttaa gtacttcaaa tcaaacgaag 3061 aacttgtggg ttacacacgg cgcattcata accagtggtt tatgtcttct aaggcaatcg 3121 ccttagtaca atcatatgtg gaaaaattcc ccttaataat tgaatactta agcacttcca 3181 acgatcgcag cgatcttttg ttcgaacagg atatttttcc caatgatgtg ggagagggaa 3241 agctggaagc tatagcagca tggcttaaag accaaccgca ctcaaaggcg gagaaaatag 3301 cttgcggctc aaaaactatg gaaaaagaag ctgtggagaa agttttggaa gccatggagg 3361 aattaaagac tctgcccgtt aagactgtga agttgcaggt taaacctcat cttttgctaa 3421 aaccagatgt tagtttacct agcatttata agccgaaacg atctataaaa ctatttgatc 3481 gtgtggttgt ggttaaaacc acttatatgg ttcctctagg ttcgaaaggc acagtgattg 3541 gagtatatcc agtaagcgat ccaaatcctg tgcgtttgga atgtgttagg gctgtggaaa 3601 acttctatga agtcctcttt gataaaactt tgccaaatgg taatgatgtg catggcattg 3661 cagaacaacg tgtgtacaaa gttcccgaat cttccgtcct attaatattt actcaaggta 3721 acaacaatga acaattttac gaagcgaaac tgcaattaga agagagtaga aacgacagcg 3781 tgaaattgaa atctcaatca gtgggaaata atacaaatac cactaccgtt gttagcaacg 3841 aaacgaaagt accccaaatt gtacaaaaag gtagcaatga cttctggatg ccctcgctaa 3901 atacgaaaat taagcattct ggcaatggtg gaatgacaaa tcgtaccact tcctcctctg 3961 gagttgcaaa cacagcaaca caagaagcac aaacaaatca gctaaaaata cttcaaaacc 4021 cacttcattt gaatcaaata aacgatagcg tcgtaacagg aacagcagaa tgtcaagaat 4081 ttcaagatgg cacgcatgca ttgaagtctt tgttgggtat tgtcccatcg cagtctcctt 4141 tatatcaaac acaaacttcg ccaaatgtat ccaaggcaca attacccaaa cctccaacca 4201 gttggagagc tgatgctcaa aagtttcccc tgcctcaaac atatccgcaa ttaccactac 4261 accaaccacc atttagccag ggaaatgctc cggtagcagt aatcggcggc aacgtaattc 4321 ctctgcctac gcccacatgt aaagatcaaa atccaccgca attcgttttt aattccaata 4381 gtttgaatca aaagggtgca tttataccct tacaagttgc tcgtggtaat agccaaacgt 4441 cggaggcacc agttccaggt actgctttaa cgatcaacaa cagtaatatt gttagcagtg 4501 tgacggcttc ctgtgccaca aatgttttaa cacaaaatct ctcccaattg gcagttagta 4561 ctggtggaaa tgaggtaaat gtttcatcag gacatccagg cgccactgtt acaagtgtcg 4621 aaaagactgc ttatgggcgg aagaaaccac ctcgtgttcc gaaaatcggt gcaaaatttg 4681 atgttgccta ttaatgctat ccaaagttaa ctccaacgat gtggaacatt ttttcatata 4741 tttcgctcaa caagtatagg cgttttaatg gttgttcttc aaacgcaatc atcgttacaa 4801 caatgtttat agtttatttt tgcgctcata aaaaatgagt ttaaaaaaaa aacaaatgta 4861 aagatcaaac aattgaatac tgtatataaa taaaaacgat tgtagtaaaa aaaatcacaa 4921 a