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LOCUS XM_013260706 4907 bp mRNA linear INV 02-SEP-2023 (LOC106093612), transcript variant X1, mRNA. ACCESSION XM_013260706 VERSION XM_013260706.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260706.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4907 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4907 /gene="LOC106093612" /note="5'-3' exoribonuclease 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106093612" CDS 262..4680 /gene="LOC106093612" /codon_start=1 /product="5'-3' exoribonuclease 1" /protein_id="XP_013116160.2" /db_xref="GeneID:106093612" /translation="MGVPKFFRYISERYPCLSELAREQCVPDFDNLYLDMNGIIHNCS HPDDTNIHFNITEEDMFKDIFNYIDKLFFLIKPQKLFFMAIDGVAPRAKMNQQRSRRF RSAKEAETLERLALSRGEVREHERFDSNCITPGTEFMERLHEALRYFIKSKISADPMW QKCRVILSGHNAPGEGEHKIMDYIRYLKSQNDFDPNTRHCLYGLDADLIILGLCTHEL HFVVLREEVKFGRKNKKASVEETRFFLLHLRLLREYLELEFDELKQYPSFDIAKLIDD WVLMGFLVGNDFIPHLPFLNISSNALPLLYKTYKKVYPELRGNINENGSLNLERLEKY FEALSEVEFENFQENYADLKYFNTKQNGVDEAFDFDVSEINAEKVDDDLAALIESSKQ FLDDEEDLSDEEGQHITDEFENFKRNYYMNKLNQENSDSAYKKEQAICYITALQWILD YYYRGVRSWGWYYPHHYAPFISDLKNFKDHVIKFDMGKPFLPFQQLLAVLPAASKALL PTAYRDLMTSPQSELIDFYPEDFETDLNGKMNEWEAVVLIPFIDEKLLLQAMEPCDQN LSPDEYKRNQHGPMLQYDYNPESQGQSPGIYSLKALYHVYCTEKPFWSRDIMVPADRT VCKELPNAARSVFFPGFPTMKHLDYKFELRCARVKVFDYPARNENMILQPMARKNLDD VFAVAEQMLNQTVYIGWPHLIKAKVVGISNKEKYIDTDGIKDMEPKIYDLHLRAVQEH LMTRMGIEFADLSVLVHVRTYVGSSYICGSQGKVSLSEMWSTTTTAYPAQGVVSQIAV QNTLTNQVKKIEQLFPENSRIFFVGNPYYGSEGVVMNPMLVYECGRLKVNITVLPEPN FAEAKYIQNQLENEYIPSHQAAVQIGIQIKCLARLTGSVLVVKGARRPKSDLPNNLAK INIGLQFKYFKSNEELVGYTRRIHNQWFMSSKAIALVQSYVEKFPLIIEYLSTSNDRS DLLFEQDIFPNDVGEGKLEAIAAWLKDQPHSKAEKIACGSKTMEKEAVEKVLEAMEEL KTLPVKTVKLQVKPHLLLKPDVSLPSIYKPKRSIKLFDRVVVVKTTYMVPLGSKGTVI GVYPVSDPNPVRLECVRAVENFYEVLFDKTLPNGNDVHGIAEQRVYKVPESSVLLIFT QGNNNEQFYEAKLQLEESRNDSVKLKSQSVGNNTNTTTVVSNETKVPQIVQKGSNDFW MPSLNTKIKHSGNGGMTNRTTSSSGVANTATQEAQTNQLKILQNPLHLNQINDSVVTG TAECQEFQDGTHALKSLLGIVPSQSPLYQTQTSPNVSKAQLPKPPTSWRADAQKFPLP QTYPQLPLHQPPFSQGNAPVAVIGGNVIPLPTPTCKDQNPPQFVFNSNSLNQKGAFIP LQVARGNSQTSEAPVPGTALTINNSNIVSSVTASCATNVLTQNLSQLAVSTGGNEVNV SSGHPGATVTSVEKTAYGRKKPPRVPKIGAKFDVAY" polyA_site 4907 /gene="LOC106093612" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctactctttt acttcgttcc tcgaagaaac atttgcaaaa ttataaattt aatgattatt 61 aattgaattt ttgattttct caacttatta actatagttt aagaatcaaa atcctttaag 121 gagcaagaga acagctattc aggaagtgag gacgacaaca agcttctggc acaactaatt 181 agcatttgtg ttgtttacta cattggaata cacattggtt tgttcacaca accaacaggc 241 taattacata caacagcaat aatgggtgta ccgaaattct tccgatacat tagtgaaagg 301 tatccttgcc ttagtgaatt ggcacgggaa caatgtgttc ccgatttcga taatttatac 361 ttggatatga atggaattat acacaactgt tcacatccag atgacaccaa cattcatttc 421 aacatcaccg aagaggatat gtttaaggat atttttaact acattgacaa gttatttttc 481 ttaatcaaac cacaaaaatt attcttcatg gctatagatg gcgtggcacc tcgtgccaaa 541 atgaatcaac agcgtagtag acgctttcgc tcggccaaag aagccgaaac tttggaacgt 601 ttagccctga gccggggtga ggtgagagaa catgaacggt tcgatagtaa ctgtataaca 661 ccaggtactg aattcatgga acgtttgcat gaggctttac gctacttcat aaaaagtaaa 721 attagtgctg atcctatgtg gcaaaagtgt agggttatac tgagcggtca taatgctcct 781 ggagagggtg aacataaaat tatggattac atacgctatc tgaaatctca aaatgatttt 841 gatcccaaca caagacattg cctttatggt ttagatgctg atttaataat attgggatta 901 tgcacgcacg aattgcattt cgtagtattg cgtgaagaag tcaaatttgg acgaaagaat 961 aaaaaagcct cagtcgaaga gacgcggttc ttcttattac atttgcgact gttgagggaa 1021 tacttagaac tggaattcga tgagttaaaa caatatccaa gttttgacat agccaaactt 1081 attgatgatt gggtgctgat gggctttctt gttggcaatg attttatacc acatttgcca 1141 ttcctaaata tatcatcgaa tgcattacct ctcctctaca aaacatataa gaaagtctat 1201 ccggaattaa gaggaaatat aaatgagaat ggcagcctaa acttggagcg tttggaaaaa 1261 tactttgagg ctttatcaga ggttgaattc gaaaatttcc aagaaaacta tgctgatctg 1321 aagtatttta atactaaaca gaatggtgtc gatgaggcat ttgactttga tgtcagcgaa 1381 attaatgccg aaaaggttga tgatgatttg gcggcactga ttgaaagtag taaacagttc 1441 ttggatgacg aagaagattt gtctgatgaa gaaggccagc atatcacaga cgaatttgag 1501 aacttcaagc gcaactatta catgaacaaa ttgaatcagg aaaatagtga cagtgcatat 1561 aaaaaggaac aggcaatttg ctacataacg gccttgcaat ggatactaga ctactattac 1621 cgaggagtgc gttcctgggg atggtattac ccacatcatt atgcaccatt tataagcgat 1681 ttgaagaact ttaaagatca tgtaattaaa tttgatatgg gtaaaccttt cttacccttt 1741 caacagttat tggcagtttt gccggcagct agtaaagcac tattacccac ggcgtataga 1801 gatctcatga cgagtcccca aagtgaacta atagattttt atcccgaaga ttttgaaact 1861 gatctcaatg gaaaaatgaa cgaatgggaa gcggttgtgc tcataccttt catagacgaa 1921 aaactcttgt tgcaggctat ggagccatgc gatcaaaact tatcgcctga cgaatataaa 1981 cgcaatcaac atggcccgat gttgcagtat gattacaatc ctgaatcgca ggggcaatcc 2041 cctgggattt attctctaaa ggctttgtac catgtctatt gtactgaaaa acctttttgg 2101 tcaagggata taatggtacc agcagaccga actgtatgta aagaattacc gaatgctgcg 2161 cggtcggtat tctttccggg atttcctact atgaagcatt tagattataa gtttgaattg 2221 agatgtgctc gggttaaagt attcgattat cctgcacgca atgaaaatat gatattgcag 2281 ccaatggctc gtaaaaattt ggatgatgtt ttcgctgttg ctgagcaaat gcttaaccaa 2341 actgtttaca taggatggcc ccacttgatc aaagctaagg ttgtgggaat atcaaacaaa 2401 gaaaagtaca tcgacacgga cggtattaag gatatggagc ctaaaatata cgatttacac 2461 ttgagagctg tgcaggaaca tttaatgaca cgcatgggta tagaattcgc agatttgtca 2521 gtgctggttc atgtgcgcac ctatgttgga tcgtcgtaca tttgtggcag ccagggtaag 2581 gtgtcgctga gcgaaatgtg gagcacaaca acaacagctt atccagcaca aggagttgtc 2641 tcacaaattg ccgtgcaaaa cactttaacc aaccaagtca aaaagatcga acaactattt 2701 ccggaaaata gtcgcatatt ctttgttggg aatccttact atggcagtga gggagttgtt 2761 atgaatccca tgttagtata cgaatgcggc agactcaaag taaacataac tgtattgcct 2821 gaaccaaatt tcgcagaagc aaaatacata caaaatcagc tcgaaaatga gtacataccc 2881 tcccatcaag ctgctgttca aattggcata cagataaagt gtctggctcg cctaaccggc 2941 tccgtgttgg ttgtaaaggg agcccgacgt cccaaatcag atcttccaaa caacttggcc 3001 aaaataaaca taggtttaca atttaagtac ttcaaatcaa acgaagaact tgtgggttac 3061 acacggcgca ttcataacca gtggtttatg tcttctaagg caatcgcctt agtacaatca 3121 tatgtggaaa aattcccctt aataattgaa tacttaagca cttccaacga tcgcagcgat 3181 cttttgttcg aacaggatat ttttcccaat gatgtgggag agggaaagct ggaagctata 3241 gcagcatggc ttaaagacca accgcactca aaggcggaga aaatagcttg cggctcaaaa 3301 actatggaaa aagaagctgt ggagaaagtt ttggaagcca tggaggaatt aaagactctg 3361 cccgttaaga ctgtgaagtt gcaggttaaa cctcatcttt tgctaaaacc agatgttagt 3421 ttacctagca tttataagcc gaaacgatct ataaaactat ttgatcgtgt ggttgtggtt 3481 aaaaccactt atatggttcc tctaggttcg aaaggcacag tgattggagt atatccagta 3541 agcgatccaa atcctgtgcg tttggaatgt gttagggctg tggaaaactt ctatgaagtc 3601 ctctttgata aaactttgcc aaatggtaat gatgtgcatg gcattgcaga acaacgtgtg 3661 tacaaagttc ccgaatcttc cgtcctatta atatttactc aaggtaacaa caatgaacaa 3721 ttttacgaag cgaaactgca attagaagag agtagaaacg acagcgtgaa attgaaatct 3781 caatcagtgg gaaataatac aaataccact accgttgtta gcaacgaaac gaaagtaccc 3841 caaattgtac aaaaaggtag caatgacttc tggatgccct cgctaaatac gaaaattaag 3901 cattctggca atggtggaat gacaaatcgt accacttcct cctctggagt tgcaaacaca 3961 gcaacacaag aagcacaaac aaatcagcta aaaatacttc aaaacccact tcatttgaat 4021 caaataaacg atagcgtcgt aacaggaaca gcagaatgtc aagaatttca agatggcacg 4081 catgcattga agtctttgtt gggtattgtc ccatcgcagt ctcctttata tcaaacacaa 4141 acttcgccaa atgtatccaa ggcacaatta cccaaacctc caaccagttg gagagctgat 4201 gctcaaaagt ttcccctgcc tcaaacatat ccgcaattac cactacacca accaccattt 4261 agccagggaa atgctccggt agcagtaatc ggcggcaacg taattcctct gcctacgccc 4321 acatgtaaag atcaaaatcc accgcaattc gtttttaatt ccaatagttt gaatcaaaag 4381 ggtgcattta tacccttaca agttgctcgt ggtaatagcc aaacgtcgga ggcaccagtt 4441 ccaggtactg ctttaacgat caacaacagt aatattgtta gcagtgtgac ggcttcctgt 4501 gccacaaatg ttttaacaca aaatctctcc caattggcag ttagtactgg tggaaatgag 4561 gtaaatgttt catcaggaca tccaggcgcc actgttacaa gtgtcgaaaa gactgcttat 4621 gggcggaaga aaccacctcg tgttccgaaa atcggtgcaa aatttgatgt tgcctattaa 4681 tgctatccaa agttaactcc aacgatgtgg aacatttttt catatatttc gctcaacaag 4741 tataggcgtt ttaatggttg ttcttcaaac gcaatcatcg ttacaacaat gtttatagtt 4801 tatttttgcg ctcataaaaa atgagtttaa aaaaaaaaca aatgtaaaga tcaaacaatt 4861 gaatactgta tataaataaa aacgattgta gtaaaaaaaa tcacaaa