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LOCUS XM_013260567 4151 bp mRNA linear INV 02-SEP-2023 mRNA. ACCESSION XM_013260567 VERSION XM_013260567.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260567.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4151 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4151 /gene="LOC106093505" /note="protein HIRA homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:106093505" CDS 131..3187 /gene="LOC106093505" /codon_start=1 /product="protein HIRA homolog" /protein_id="XP_013116021.1" /db_xref="GeneID:106093505" /translation="MKLLKPSWVHHDEKPIFSIDVHQDCLKFATGGQGADSGRIVIWN LLPVLSEKDELDENVPKMLCQMDNHLACVNCVRWSQNGLMLASCSDDKLVMIWKQSKG SSGVFGTGGIQKNPESWKCVFTLRGHAGDVLDLAWSPQDRWLASCSVDNTIIIWDVQN FPVIITTLRGHTGLVKGVAWDPVCKYLASQSDDRSVKIWKTRDWTCSSTITEPFQECG GTTHILRLSWSPDGQYLVSAHAINGGGPTAQIIEREGWKCDKDFVGHRKAVTCVRFHT AILKRQAPKSQKPQQYCCLAVGSRDRSLSVWMTALQRPLVVIHELFNDSILDLSWGPE KYILMACSGDGSVACLQFSENELGTPLSEEDRNALYQRVYGKSVGNLTNGSGTANDVL IENPELILHSQNKIKPPSLPTMTNFSNNNSIDKSGSLVSSNGFSGYAEKTLNSQNSNN NNNATSIGFGQTTPVKAISKQMETRTKDGKRRITPMFIPLNPDVEEATTTTSANSFTS KQSQDSSLTPFQMQAQPVESVTTNVPSSNNKENALQQTTTNPPKANQSDQDLGRLDPR LVKSTDKPNPEPFTIKQDVFKEFPRFKRTPQHFASSETTAASTSSSKVYQASTAGPKI TITASTKCEFQKTAMDYRVHVANGFVQTAMGPLAKVTAIRLPTGKLWETYVGSPIVNF NFCLKCVMLCSLDGSMRLLDLQTGAPLLPVITLTTAAIQCAFCPKGLLVGVITDCGLL RIWNIEQCSSVLATTCSEIFGKHGSIYQLTITEHGVPLIIFADGNAYSYSPRMQSWLV VCSNDPIMRHGVRSSLPNEFPKDYIDFPLMSVQASTNFLSSTSAGIELNAKDWQSVAK VSFAENQIKICEMINSPEELKFWYGMLVFHISISGDEKKLRNLLNNLIDIEGQELKIL GIPKLEMLEITLSQIKLVPRWQRVYMEYNELLQDMKVMKQETSQESVNKDSMVVETTE LNTPLSLPSQSSTTLINTMLKSVKDISETIVDSGGAANAGESMQTA" misc_feature 167..1171 /gene="LOC106093505" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cd00200" /db_xref="CDD:238121" misc_feature 176..325 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature order(218..220,239..241,257..262,332..337,389..391, 401..403,419..424,509..514,563..565,578..580,596..601, 641..643,692..694,707..709,725..730,791..796,839..841, 863..865,881..886,920..925,1016..1018,1031..1033, 1049..1054,1088..1090,1094..1096,1148..1150,1160..1162) /gene="LOC106093505" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 350..511 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 524..637 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 656..763 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 797..919 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 935..1090 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1106..1174 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1247..1378 /gene="LOC106093505" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1541..1603 /gene="LOC106093505" /note="HIRA B motif; Region: HIRA_B; pfam09453" /db_xref="CDD:462802" misc_feature 2246..2839 /gene="LOC106093505" /note="TUP1-like enhancer of split; Region: Hira; pfam07569" /db_xref="CDD:462211" polyA_site 4151 /gene="LOC106093505" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctccataagg tacacaagga aaaaatgaat taactaaaaa acaaaactgg gaaccgacac 61 agccaaaaag aaaaaaaatt gtgttgttct tttaaacatc taaatcctta agacttgcta 121 aacaattttg atgaaacttc taaaaccaag ttgggtacat catgacgaga aaccaatttt 181 ttccattgac gttcaccagg attgtcttaa gtttgctacc ggcggtcaag gagcggattc 241 cggaaggatc gtaatatgga acttattgcc ggtgctctca gaaaaagatg aattggacga 301 aaatgtgccg aaaatgttgt gccaaatgga caatcatctg gcttgcgtta attgcgtgcg 361 ctggtcgcaa aacggtctca tgttggcctc gtgttccgac gacaaactgg tgatgatttg 421 gaaacaatca aagggttcaa gtggtgtttt cggcactggt ggcatacaaa agaatccaga 481 atcttggaaa tgtgtcttca cacttcgcgg acatgctgga gatgtcctgg atttggcttg 541 gtcgcctcaa gatcgttggc tggctagttg tagtgtggat aatacaatca ttatatggga 601 tgtacaaaat ttccctgtca ttatcaccac tttgagggga cataccggtc tagtcaaagg 661 tgttgcttgg gatccggttt gtaagtattt agcctcacaa agtgacgatc gtagtgttaa 721 aatttggaag actagagatt ggacctgcag tagtaccatc accgagcctt ttcaagaatg 781 tggaggtaca acgcatattt tacgtctatc atggtctcct gatggtcagt acttggtgtc 841 tgcccatgca ataaatggcg gtggtcccac ggcacagatt attgaaagag aaggatggaa 901 atgtgacaaa gattttgtgg gccatcgaaa agctgtcact tgcgttcgct ttcacacagc 961 aatattaaaa cggcaggcac ccaaatcaca aaaaccccaa caatattgtt gtctagcagt 1021 aggatcacgt gatcgctcat tatctgtatg gatgacagct ttgcaacgac ctttggtggt 1081 gatacatgaa ttattcaatg acagcatttt agacctctct tggggacccg aaaaatatat 1141 tctgatggca tgtagtggtg atggatccgt agcatgtctt caattttcag aaaatgaact 1201 gggaacacca ttatccgagg aagatcgtaa cgctttatat cagcgagtct atgggaaaag 1261 tgttggcaat ctaacaaatg gatctggtac tgccaacgat gtacttatcg agaatcctga 1321 attgatactg catagccaaa ataaaataaa acctccttcc ctgccaacaa tgaccaattt 1381 tagtaataac aatagcatag acaagtctgg gtcactggtc tcttcaaatg gtttcagtgg 1441 atatgcggag aagactttga attctcaaaa ctcgaacaac aataacaatg caacttcaat 1501 tggatttggt cagacgacac cagttaaagc gataagcaaa caaatggaaa cgcgtacaaa 1561 agatggcaaa aggcgtatca caccaatgtt tattcctctc aatccggatg tagaagaagc 1621 gaccacaacg acttctgcca atagctttac ctctaaacaa agtcaagaca gttctttgac 1681 gccctttcaa atgcaagctc aacctgtaga atctgttaca acgaatgtac ctagcagtaa 1741 caataaagag aatgcccttc aacaaacgac tacaaatcca cctaaagcta atcagagtga 1801 tcaagatctg ggacgcttag atcctagact ggtcaaaagt actgacaaac ctaatccaga 1861 gccctttaca ataaagcaag atgttttcaa agaatttcca cggttcaaaa gaacccccca 1921 acattttgct agttcggaaa ctacggctgc gtcaacctcg tcctccaaag tatatcaagc 1981 ttcaacggca ggaccaaaaa ttacaattac agcttctaca aaatgtgaat ttcaaaagac 2041 tgcaatggat taccgcgtac atgtagccaa tggtttcgtg caaacggcaa tgggaccatt 2101 ggcaaaagta acagctatac gtttgcccac aggaaagcta tgggaaactt atgtcggttc 2161 gcctattgtg aatttcaatt tttgtctcaa atgcgtcatg ctttgcagtt tggatggatc 2221 catgcgctta cttgacttac aaacgggagc tccattattg ccagttataa cgctaaccac 2281 agctgccata cagtgtgcct tctgccccaa aggcttgctt gtaggtgtta taaccgattg 2341 cggcctattg cgcatatgga atatagaaca gtgttcaagt gttttggcaa caacatgttc 2401 agaaatattt ggcaaacatg gctccattta tcagttaact attaccgaac atggagttcc 2461 attgataatt tttgctgatg gcaatgccta ttcatactca ccgcgaatgc aatcttggtt 2521 ggtggtttgt tcaaatgatc ccataatgcg acatggcgtt cgatcgtccc ttccaaatga 2581 atttcccaag gattacatag actttcctct tatgtcggtt caagctagta ctaattttct 2641 ttcctcaacc agtgctggca ttgagcttaa tgctaaagat tggcaatctg ttgcaaaggt 2701 atcttttgct gaaaatcaaa ttaaaatatg tgaaatgatc aattcccccg aagaactgaa 2761 gttctggtat ggcatgttgg tgtttcatat tagcattagc ggcgatgaga agaaacttcg 2821 caatctgcta aataatctaa tagatatcga gggacaagaa ttgaaaattt tgggcatacc 2881 aaaacttgaa atgttggaaa taactttaag tcaaataaag ctggttccca gatggcaacg 2941 tgtctacatg gaatacaatg agctgcttca agatatgaaa gtaatgaaac aagaaacttc 3001 acaagaaagc gtcaacaaag acagcatggt ggtggaaacg acagaattga acacaccctt 3061 aagtttacca tcacaatcat cgacaacgct cataaacaca atgttaaaat cagttaagga 3121 tatatcggag acaatagtgg atagcggcgg agctgctaat gctggtgaaa gtatgcaaac 3181 tgcttaaatc tttgtgggcc attgcctaga tacctgctca gcagtagtaa gtcctgtttt 3241 ttcctttgtt cataattttg tctctctcat tttccatcta gaagctaagc tttgtgtgta 3301 acaacaaatt tattattatt agttttgcaa cgtatctgcc aatacacagt ggtattttta 3361 agaaaccttt agaatatttt caaatttaag atactattta tgtttcgata aggtcataac 3421 tcaaaaaaat cttttgtttt cataagtcga cggattatat gtttcaacaa tggggtgttt 3481 taaaagagca gaaagtttaa atatgatcat ggataattaa gtttaaacgt aaacatttat 3541 ttcttttttt taatattttt attttaacgt gggcactggg ctcggttcag ttcatagtct 3601 agacccttta tctcacgaaa tgtgtttttt tcgccctcgc gttaaacaac atctttatac 3661 tcaaaaataa atagttccca tatttaatcg acttgcaaag cataaaagcg catattttgt 3721 aaattgtttt tgtgtaaatt ggctaaatgc agagtctagt ctagttttcc atatgatttt 3781 ttgacttggt ctaatttaat atattgcatg aaaacttttg aagggctgtt tccatattgt 3841 tctcaaccta tttccaatct atacaaaaac agacatatgt attggctata agttacacga 3901 accataataa cgatatgcaa gcgctctgtg cctcctaata ccatactact gctaggttgt 3961 tccccctatt ctgtttaaaa tttcgttaag taaattttcg ttcatattgt acggatttta 4021 aactagttat actctttgta ttgtatataa gtaatattta tatttggaat ttttgaatga 4081 aaaaatgtaa taatataata aatcagaaaa attatacatc aaacattaca tttcatatta 4141 atgtacttgg a