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LOCUS XM_013260225 4743 bp mRNA linear INV 02-SEP-2023 (LOC106093204), mRNA. ACCESSION XM_013260225 VERSION XM_013260225.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260225.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4743 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4743 /gene="LOC106093204" /note="copper-transporting ATPase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106093204" CDS 330..4139 /gene="LOC106093204" /codon_start=1 /product="copper-transporting ATPase 1" /protein_id="XP_013115679.2" /db_xref="GeneID:106093204" /translation="MEEKMPFTSDNQSLIEIELLGNATTANEATTKEVRLAIKGMTCQ SCVRNIEGNIGTKAGIIKCRVELQENAGYFTYDSTITNPTQIANDIDDMGFDCTYDGQ TDADPPKCVIRVLGMTCQSCVRNIEGNIGTKEGVKTIKVCLEDKNAIVEYDSSILTPD LIAEMIDDMGFEARALEQTSSSSPTNNSLPPSPIKKSPTQANDEQKQQVAATPLKVVT NGHATSIPVENELLSKCFLHIRGMTCASCVAAIEKHCKKIYGIDSVLVALLAAKAEVK YNGNVITPESIAKSITELGFPSELIDEPNSGEAEVEIEILGMTCASCVNKIETHVGKL KGISEASVTLLTKRGKFRYNTEVTGPRNICEAIEQLGFQAHLLSGKDKMAHSYLEHKE EIRKWRTAFLISLLFGGPCMIAMIYFMVEMGNRGHAAMCCLVPGLSMENLVMFLLSTP VQFFGGWHFYVQSYKAIKHGTTNMDVLISMVTTISYLYSVGVVIAAVLMEQNSSPLTF FDTPPMLLIFISLGRWLEHIAKGKTSEALSKLLSLKAAEAVLVQISDDFEITSEKVIS VDYVQRGDILKVIPGAKVPVDGKVLYGHSTCDESLITGESMPVAKRKGAVVIGGSINQ NGVLLISATHTGENTTLAQIVRLVEEAQTSKAPIQQLADRIAGYFVPFVVVVSSVTLI GWIIAGFADPNLVPVAMEHKAHMDTNTIVVSYAFKCALSVLAIACPCALGLATPTAVM VATGTGAINGVLVKGATALENAHKVKTVVFDKTGTITHGTPMTSKVIMFVKPTFCSLA RALTIVGAAESNSEHPIASAIVRFAKDMLAQDSLGKSANFQAVPGCGIKVTVSHYETA LRQSCNAEKIINFENSYRSHGNNIQKAPVQLENGVSIAELIPSQSENQRLQASQKQQH LQLLQLDDQIAAPVPEVAGDVASVLDSEINVLIGNREWMLRNAIQVSSEINNAMAEEE SKGRTAVLCALNGQLICMFAVSDMVKPEAHLAVYTLKKMGIDVILLTGDNKNTAASIA REVGINRVFAEVLPSHKVAKIQRIQEAGHRVAMVGDGVNDSPALAQADVGIAISAGTD VAAEAADVVLMRNDLLDVVACLDLSRKTVKRIRYNFLFASMYNLLGIPLASGIFAPFG ITLQPWMASVAMAASSVSVVCSSLLLKLYRKPTAAKLRTSDYMEYVATSKEREPDQLS LHRGLEDLPRRRSSSSLLSRIFLSSGSIKMDPNEDSLLAGEDVEYIKPKIVKSKNLQE VTELQKL" polyA_site 4743 /gene="LOC106093204" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgtcgtcgg gaagtgggtg ttgaaatggt gtttttgtgt ttttagactt gaatttttag 61 aattccgctg ccactcactg gttccaaaag ggcacaaagg aattaatgta gtgtaaaaat 121 tgtccgtgta aatgaaaata ggaaaaatca aaattaccca atgtgaatcg gcattttaac 181 ttaatcacgt agcaggaaca ataaaaagta aagtgtttta gtggtggtgt tcggccacag 241 ataagttgaa acgcaagtga agtgtacata atagcataac aggcaggctg gcaacaaaac 301 aacaacaaca agtgtgactg acgagggcaa tggaagaaaa aatgcctttc acttcggaca 361 atcaaagcct gatcgaaatt gaactgttgg gaaatgcgac aacggcaaat gaggcaacca 421 cgaaagaagt acgactggcc ataaagggaa tgacctgcca aagttgtgta cgcaacattg 481 aaggaaatat aggtacaaag gccggaatta taaaatgtcg agtggaactg caagagaacg 541 caggttattt cacctacgac agtacaataa caaatcccac gcaaatagca aacgacatcg 601 acgacatggg gtttgattgc acctacgatg ggcagaccga cgcagatcct cccaagtgtg 661 tgataagagt tttgggcatg acatgtcaaa gttgcgtgcg taatattgaa ggtaatattg 721 gcacaaagga aggcgttaaa acaatcaaag tatgtttgga agacaaaaat gcaatagtgg 781 aatatgacag ttccatactt actccagatc ttattgccga aatgatagac gacatgggct 841 ttgaagcgcg tgcattagaa caaacgtcct cctcatctcc aacaaataac tcacttccac 901 catctccaat aaaaaaatct cccacacaag cgaatgacga acaaaagcaa caggtggctg 961 ccaccccctt aaaggttgta accaatggac atgccacttc cataccagtt gaaaacgaac 1021 ttttatcaaa atgcttcctg cacatacgcg gaatgacttg tgccagttgt gtggccgcca 1081 tcgagaagca ttgtaagaaa atttacggta ttgacagtgt tttggtggct ttattggcgg 1141 ccaaagcgga agtaaagtac aacggcaatg taatcacacc cgaaagcata gctaaatcaa 1201 ttactgagct gggatttccc tcggagttga tcgatgagcc caacagcggc gaggctgaag 1261 tggagataga aattttgggc atgacctgtg catcatgtgt aaataaaata gaaacgcatg 1321 tgggaaaact gaaagggata tccgaagcct ccgttacttt actaacaaaa cgaggaaaat 1381 ttcgctacaa taccgaagtc actggacccc gtaacatatg tgaagctatc gaacaattgg 1441 gctttcaagc ccacttacta tccggtaagg ataaaatggc ccacagctat ttggagcaca 1501 aggaagaaat acgcaaatgg cgtacagcat ttttaatatc actactgttt ggtggacctt 1561 gcatgattgc catgatatat tttatggttg aaatgggcaa tagaggacat gcggccatgt 1621 gttgtctggt gcccggcctg tctatggaga atctagttat gtttttgtta tcaacaccgg 1681 tgcagttctt cggcggttgg catttttatg tgcagtcgta caaagccatc aaacatggca 1741 ccaccaatat ggatgttctt atttctatgg tcactactat atcctatttg tactcagtgg 1801 gtgttgtaat tgctgcagtg ttgatggaac aaaactcgtc gcctttaaca ttcttcgata 1861 cacccccaat gcttttgatt tttatatcct tgggaagatg gctggaacat attgccaaag 1921 gaaaaacatc ggaggctctt tccaaactgt tatccttgaa ggctgccgaa gcggtgcttg 1981 tacaaatatc cgacgatttt gaaataacat cggaaaaagt tatatccgtg gattacgtgc 2041 agagaggtga tattctgaaa gtcataccag gagccaaggt gcctgtggat ggcaaagttc 2101 tttatggtca ttctacatgt gacgagtcct tgattactgg agaatctatg ccagttgcaa 2161 agcggaaagg ggctgtggtg atcggtggtt ccattaacca aaatggcgtc ttgttgatat 2221 cagccaccca cacgggtgag aacactacct tggcacaaat tgtccgcctg gtggaagagg 2281 cccaaacatc taaagctccc attcagcaat tggctgatcg catcgctggc tattttgtgc 2341 cctttgttgt agtggtctcc agtgtgacgt taataggctg gataatagcg ggttttgcag 2401 atcccaacct ggtgccagtg gccatggaac acaaggccca tatggatacc aacaccatag 2461 tggtgagtta tgcgttcaag tgtgccttga gcgttttggc gattgcttgc ccttgcgcct 2521 tgggtttggc gacgccaacc gctgttatgg tggccactgg cacaggggct attaacggcg 2581 ttttggtaaa aggagccaca gcgctggaaa atgctcacaa ggtaaaaact gttgtttttg 2641 acaagactgg cactatcact cacggtaccc cgatgacttc aaaggtgata atgtttgtaa 2701 aacccacctt ttgcagcctg gctcgcgctc ttaccatagt tggtgctgcc gagtcgaata 2761 gtgaacatcc catagcttcc gccattgtga ggttcgccaa agatatgttg gctcaggact 2821 ctttaggtaa atcggcaaat tttcaagccg ttcccggctg tggaatcaag gttacagttt 2881 ctcattacga aactgcactg agacagtcct gtaacgcaga gaagataata aactttgaga 2941 acagttaccg ttcacatggt aacaacattc aaaaggctcc cgtccaattg gaaaatggtg 3001 tttccattgc tgaactaata ccctcccaaa gtgagaacca gcgtttacag gctagccaaa 3061 aacagcaaca tttacagttg ttgcaactgg atgatcaaat agccgcacct gtgccagagg 3121 tagctggaga tgtcgcttct gtactggaca gtgaaattaa tgtacttatc ggcaatcgag 3181 aatggatgct gcgcaatgcc atacaggtgt cttcggaaat caataatgcc atggccgaag 3241 aggaatctaa aggaaggacg gcggtgctat gcgctttgaa tggacaactg atatgtatgt 3301 ttgcagtttc cgatatggtt aaaccggagg cccatttggc cgtatatact ttgaaaaaaa 3361 tgggcattga tgttatactt ctgacgggtg ataataaaaa tacagcagca agcatagcac 3421 gagaggttgg tataaatcga gtctttgctg aggttctacc atcgcataaa gtggcaaaaa 3481 ttcaacgcat acaagaggca ggccatcgtg tggctatggt aggcgatggt gtaaatgaca 3541 gtccagcttt ggcacaagca gacgttggca ttgccatttc agcgggaact gatgtagcag 3601 ccgaagctgc cgatgtagtt ttaatgcgca atgatctgct ggatgtagtc gcttgtttgg 3661 atttgtcgcg caaaactgtc aaacgtatac gctacaattt cctctttgcc agcatgtaca 3721 atctattggg aatacccttg gcttcgggta ttttcgctcc attcggcatt acattacaac 3781 catggatggc ctcggttgca atggccgcca gttcggtgtc ggtggtttgc tcctcgctcc 3841 tgttaaaatt gtatcgtaaa cctactgcag cgaaattgcg aacgtcggac tacatggagt 3901 atgtggccac atccaaggaa cgcgaacccg accaattgtc gctgcaccga ggcctggaag 3961 atttgccacg tcgtcgctcc agctcatcgc tattgtctcg catctttttg agctctggta 4021 gcattaaaat ggaccccaac gaagactctc tgttggccgg cgaagatgtt gaatatatca 4081 agccaaaaat agtcaaaagt aagaatttgc aagaggtcac cgagttacaa aagttataga 4141 ctctgccagg tgtctattat cgccaaccca aagagacatg agaaagttgt tgatcatttg 4201 attgttttgt tttgtgcata catgcatgcc tcctgcaagt gtgcacactg ttatggcaag 4261 agaacgtatt ccttaatttt atttttcttg ttaggtgaat atccattttt gtttatttgt 4321 taaattttac gtcatcattt ttctacataa ctcgccttat acacatcata agtttgtccc 4381 taaatagcac atccactcac tcacttgaaa atgttcattt acttgtattt ttaagaccaa 4441 aaattggaaa aagaaaggaa gttataaaac tgtgaatgct aagtttcttt tcgaaatctt 4501 acctatctac aagtgtatag aaaagtatcc cataagaaaa gcttacatta aagctatata 4561 ttttgtaata gcaattaaaa cgatttaaac aaaacacaca caaagacaaa ttcatgtata 4621 ttgtaatata taactttttt ttttatatgt ataatcaatc cattgtaact atgtgacgac 4681 caggcattgt ttggtttgca aacatatgct caaaatcaaa ctaaataaaa ttcttcaatt 4741 caa