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LOCUS XM_013260165 1849 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013260165 VERSION XM_013260165.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260165.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1849 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1849 /gene="LOC106093150" /note="dystrotelin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106093150" CDS 98..1711 /gene="LOC106093150" /codon_start=1 /product="dystrotelin isoform X2" /protein_id="XP_013115619.1" /db_xref="GeneID:106093150" /translation="MAWNQLQPFFRISFGIFLIRRHRRHSISLLEIKITFLLLCKLHA SDQMVLEFYNLLCNRKTKCVSKLNFEYMLNILSKIFSYIGEASAYGSQNTTTVLDQSY ARCHNLSGLTEYQFHCLWTTTQTRFLIYANLIALIKRIEDTEKLIHLNTCASCHVEKI TGIRFKCQNCKELSLCLKCFAKGYSNNKHDSRHRMYEVYVEDVPPKKFSYYLAKLCTG IFCAAKRSSDDTKGFANETVTQNDTELVTIATNRTSNASTVSVKASAGNAVSAAQKKV FEEKSKSDNNSQKIEVDASLACLTTTASTALNVSGKLQTIIDKLLNQNEKLEDQLKYI ESSTTEEISHFLREHQEFLREIIAEMRSFSTVHSETSKTFLPSSTPNRWGVPGMDNLS AVVNTQSICNSFPYEDKARDNLTHSINGADVNRTYLDANKSDYSINDLSLWFNQRRLS SQPHNSMAMVQPLSVLTEVTSQDELNYYGLNSRDTELDNFKLLLNKVKEIVDDSYSDN ADLSEATQNLENVLESIINTEADRKLSLN" misc_feature <164..460 /gene="LOC106093150" /note="EF-hand-like motif found in the dystrophin/dystrobrevin/dystrotelin family; Region: EFh_DMD_DYTN_DTN; cl07621" /db_xref="CDD:352774" misc_feature 230..343 /gene="LOC106093150" /note="EF-hand-like motif [structural motif]; Region: EF-hand-like motif" /db_xref="CDD:320003" misc_feature 380..460 /gene="LOC106093150" /note="EF-hand-like motif [structural motif]; Region: EF-hand-like motif" /db_xref="CDD:320003" misc_feature 545..691 /gene="LOC106093150" /note="Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated...; Region: ZZ_dah; cd02345" /db_xref="CDD:239085" misc_feature order(551..553,560..562,596..598,605..607,623..625, 632..634,662..664,674..676) /gene="LOC106093150" /note="Zinc-binding sites [ion binding]; other site" /db_xref="CDD:239085" misc_feature order(551..553,560..562,623..625,632..634) /gene="LOC106093150" /note="zinc cluster 1 [ion binding]; other site" /db_xref="CDD:239085" misc_feature order(554..556,587..589,593..595,611..613,617..619) /gene="LOC106093150" /note="putative charged binding surface [active]" /db_xref="CDD:239085" misc_feature order(590..592,635..637,680..682,689..691) /gene="LOC106093150" /note="putative hydrophobic binding surface [active]" /db_xref="CDD:239085" misc_feature order(596..598,605..607,662..664,674..676) /gene="LOC106093150" /note="zinc cluster 2 [ion binding]; other site" /db_xref="CDD:239085" polyA_site 1849 /gene="LOC106093150" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttaatttga tggttccgcc tttccagtta acctctttga tacatgacat attttttgcc 61 tgtgaaaagc tagggcattt cactaagatg gtatcatatg gcctggaatc agctacagcc 121 gttctttcga atttcttttg gaatattttt gatccgtaga catcgtcgcc attcgatatc 181 tcttttggag attaagataa catttctctt gttgtgtaag ttgcatgctt cagaccaaat 241 ggtcttggaa ttttacaatt tactatgtaa caggaagaca aaatgtgtat ctaagctcaa 301 ctttgaatat atgctgaaca ttttgtcgaa aatattctca tatatagggg aggcatcagc 361 atatggatct caaaacacca caacggtctt ggatcagtcc tatgctaggt gccacaattt 421 gtctggccta actgaatatc agtttcactg tttgtggacc acaacacaaa cacgtttcct 481 tatatacgca aatttaattg cactcattaa acggattgaa gacacagaga agctgattca 541 tctcaacact tgtgcatctt gtcacgttga aaaaataact ggaattcgct ttaaatgtca 601 aaattgcaaa gaactctcgt tgtgtttaaa atgttttgcc aagggctatt ccaataataa 661 acatgactcc agacatcgaa tgtatgaagt atatgttgag gatgtaccac ctaaaaaatt 721 ctcttactac ttagccaaat tatgcacagg tattttttgt gcggctaaac gctcaagtga 781 tgataccaaa ggttttgcta acgaaacggt aacacagaat gacacagagt tggtaaccat 841 tgccaccaat agaacatcaa atgcatcaac cgttagtgtt aaggcatccg ctggtaatgc 901 tgtttcagct gcacagaaaa aagttttcga agaaaaaagc aaaagtgata ataatagtca 961 aaaaattgaa gtggatgctt cgttagcttg tcttacaaca actgcttcga cagccttaaa 1021 tgtttctgga aaattgcaaa ccataattga caaacttctg aatcaaaatg aaaaactgga 1081 ggaccaatta aaatatatag aatcatcaac gacagaagaa atatcgcatt tcttaagaga 1141 acatcaagaa tttctaaggg aaataatagc ggaaatgcga agtttttcga ctgtacattc 1201 ggaaacctca aaaacatttt tgccaagtag caccccaaac cggtggggag taccaggcat 1261 ggataatcta agcgctgtag ttaacacaca atctatttgt aatagttttc catatgaaga 1321 caaagcaagg gataatctaa ctcattcaat taatggtgca gatgttaatc gtacctatct 1381 tgatgccaat aaatcggatt attccattaa cgatttgagc ctatggttta atcaaaggcg 1441 tttatcatcc caacctcaca attctatggc catggtacaa ccactttccg ttctgacgga 1501 agtcacatcg caggatgaac ttaattatta tggccttaat tcccgtgata cagaattgga 1561 taattttaaa ttacttttga ataaagttaa agaaattgta gatgactctt acagcgacaa 1621 tgcggacttg tccgaagcta cacaaaattt ggaaaatgtt ctggaatcaa taatcaatac 1681 cgaagcagac cgaaaactga gcctaaatta atttgtaatc attccatcca tcacattgtt 1741 atgaacaatt gcaatatatt ttcagtagct ttaagttata agcgttaaaa atccagaaca 1801 cacaatttta actattttgt acaataaatt ttatacatac ttttataaa