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LOCUS XM_013260162 4004 bp mRNA linear INV 02-SEP-2023 DDX46 (LOC106093149), transcript variant X2, mRNA. ACCESSION XM_013260162 VERSION XM_013260162.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260162.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4004 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4004 /gene="LOC106093149" /note="probable ATP-dependent RNA helicase DDX46; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:106093149" CDS 71..3472 /gene="LOC106093149" /codon_start=1 /product="probable ATP-dependent RNA helicase DDX46 isoform X2" /protein_id="XP_013115616.1" /db_xref="GeneID:106093149" /translation="MEKNLRRDRDRDRGERERDRDYERERERDRERKRRYSRSRSRSP KDRPSRNGKRDERKRDRGERDIRDFDRRRDEKRRRPSPTQTKSKEYEREKERHLDRER EREKEKERERDRERERERQRELERQREKDQAQLPTKSPTPMIVINADSSSSSPEEEEI DKEEEQRRLELEMIKRRERIERWRAERKLKEIEANKKDIKSLLPPSATAAAKKWSLED ESEEEDNSITVDLSKEPDSPPSKFHRIKKPKEDDDDEKVDRLKSSKSIVSAAKAKIEA LREEEELKGEQLKKLQKEEEEAKNEAIMVSEAAKDDDEIDPLDAYMQEVAKEVRQINH IITQPKKQQGVVILTGAKKKTTVNKDKGELIEQNMDSLEYSSEEELEDIKDTAASLAN KHRKELAKIDHSGVEYAPFRKNFYVEVPELVRMTQQEVEKYRTELEGIQVKGKGCPKP IKTWAQCGVSKKEMDILRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFIL PMFRHILDQPHLEDGDGPISVIMAPTRELCMQIGKDIRKFSKSLNVRVVCVYGGTGIS EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVM RIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSIVCKDVEQHVAIMED EAKFFKLLELLGIYQEKGSIIVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDS TILDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVTNHYEDYVHRCGRTGRAGKKGS AWTFLTPEQGRYAGDIIRAFELSETPVPEDLQKLWNDYKASQEAEGKKVHTGGGFSGK GFKFDEQEANAAKESKKLQKAALGLADSDDEEDIEQDIDQQIEQLFAAKRTVKDTSMP TPAVTMVATTPAAGSTVIAGGNNVAATTAVGSDKLELAKRLASKISTNKNLGADGKAS TQVAAEAILKGSNATQPMITARSVVEQLAAKLNNKLNYQPKDDEESSVSGLLPNQANS FTKYEEELEINDFPQQARWKVTSKEALAQISEYSEAGLTVRGTYVPNGKNPPEGERKL YLAIESCSELAVQKAKREITRLIKEELLKLSSAHHVFNKGRYKVL" misc_feature 1256..2593 /gene="LOC106093149" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(1430..1432,1484..1486,1490..1498,1505..1507, 1559..1579,1895..1900) /gene="LOC106093149" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350711" misc_feature 3158..3466 /gene="LOC106093149" /note="type I K homology (KH) RNA-binding domain found in DEAD box protein 46 (DDX46) and similar proteins; Region: KH-I_DDX46; cd22473" /db_xref="CDD:411901" polyA_site 4004 /gene="LOC106093149" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatgtcgaag aattcctctt ctgggtaaga gcgtgactgt atttggtgta cagattgtca 61 atattatcaa atggaaaaaa atttgagaag agaccgtgac cgtgatagag gagaacgcga 121 acgagatcgt gattatgaaa gagaacgcga gagggatcgc gagcgaaagc gccgctattc 181 ccgaagtaga tctcgttcac cgaaggatag accatctcgc aatggaaaaa gagatgaaag 241 aaaacgagat cgtggtgaac gcgatattcg agatttcgac cgtaggcgtg atgaaaagcg 301 tagaagacca tctcccaccc aaacaaagtc aaaggaatat gagagggaaa aagagagaca 361 cttagataga gagcgagaga gggaaaagga aaaagaacgt gaaagagatc gtgaacgtga 421 gagagagcgg cagagagaac tggaaaggca acgcgaaaaa gaccaagcac aactgccaac 481 aaaatcccca acaccaatga tagtcataaa tgctgattca agcagttcat ctcctgagga 541 ggaagaaata gacaaggaag aggaacagcg tcgactagaa ctggaaatga taaaacgtcg 601 tgaacgtatt gaacgttggc gggcagagag aaaactaaag gaaatagaag caaataaaaa 661 ggacataaaa tctttattgc ccccttctgc aacagcagca gcaaagaaat ggagcttaga 721 ggacgaatcg gaggaggagg acaacagcat tacagtagat ctcagcaaag agccagattc 781 accgccttcc aagttccata gaatcaaaaa gcccaaagag gatgacgacg acgaaaaagt 841 cgatagattg aagtcttcca agagcattgt aagtgcggcc aaagctaaaa ttgaagcctt 901 acgagaagag gaggagctaa aaggcgaaca actgaaaaag ctacaaaaag aggaagagga 961 agcaaaaaat gaggcaatca tggtgagcga agctgctaaa gacgatgacg aaattgatcc 1021 attagatgcc tatatgcaag aggttgccaa agaagtgagg caaatcaatc atatcataac 1081 acagcccaaa aaacaacaag gagttgtaat tcttactggc gccaaaaaga aaaccacagt 1141 taacaaggac aaaggagaac taattgaaca gaatatggat agtttggaat attccagcga 1201 ggaggaattg gaagatataa aagatactgc tgccagctta gctaacaagc atcgcaaaga 1261 attggccaaa attgatcatt ctggtgtgga gtatgcacca ttccgtaaaa atttctacgt 1321 ggaagtgcca gagctagttc gtatgacaca gcaggaagtt gaaaagtatc gaaccgaatt 1381 ggaaggtata caggttaagg gcaaaggttg tccaaaacct attaagacat gggctcaatg 1441 cggtgtcagc aaaaaagaaa tggacatctt acgaaaactt ggtttcgaaa aaccaacacc 1501 tatacaatgt caagcgattc cagccatcat gtcggggcgg gacttaatag gtattgcgaa 1561 aacaggcagt ggcaagacgc tagcatttat tttacctatg tttaggcata tcttggatca 1621 gccgcatcta gaggatggcg atggacctat ttcagttata atggctccca ctcgtgagtt 1681 atgcatgcaa attggcaaag acattcgcaa attctccaag agtttgaatg tgcgagttgt 1741 atgtgtttat ggaggaactg gtatctcgga gcaaatagct gaactaaaac ggggggctga 1801 aattatagtc tgcaccccag ggcgtatgat tgacatgcta gcagcaaact ctggacgagt 1861 cacaaatttg cggcgcgtta cttatattgt cttggatgaa gccgatcgca tgttcgacat 1921 gggtttcgaa ccgcaggtaa tgcgtatcat tgacaatgta aggcctgatc gtcagacagt 1981 aatgtttagt gcaactttcc caagacaaat ggaggcgtta gctcgtcgca tactgaagaa 2041 gcccatagaa gtaattgtag gtggacgatc catagtttgc aaagatgtag aacagcacgt 2101 tgccattatg gaagatgaag ccaaattctt taaacttttg gaactattgg gtatatatca 2161 ggaaaagggc agcattattg tgttcgttga caaacaagag aacgccgata ttctcttgaa 2221 agacctaatg aaagcctcat atccctgtat gagcttacat ggtggcatcg atcagttcga 2281 tcgtgattct actatattgg attttaaatc tggtaaggtg cgtcttttga tagccacctc 2341 tgtggcagct cgaggtttag atgtcaaaga tttgatacta gttgtgaact atgatgttac 2401 aaatcactat gaagactacg tacatagatg cggccgcaca ggcagagccg gaaaaaaagg 2461 tagcgcttgg actttcctta cacccgagca aggacgatat gctggtgata ttatacgggc 2521 ttttgaatta tctgaaactc ctgtccccga agatttgcaa aaactttgga atgattataa 2581 ggcgtcgcag gaagcagagg gaaagaaagt ccatacaggt ggaggattca gtggtaaagg 2641 tttcaaattc gacgaacaag aagccaacgc agccaaggag agtaagaaac tacaaaaagc 2701 agctttgggc ctagctgatt ccgatgacga ggaagacata gagcaagata tcgatcaaca 2761 aattgagcaa ctttttgcag ccaagagaac agtaaaagat acctcaatgc ccacaccggc 2821 tgttacaatg gtagccacta ctcccgcggc tggcagtaca gtcattgctg gtggaaataa 2881 tgtcgcagcc accactgcag tcggttccga caaacttgag ttggccaaac gtttggcttc 2941 aaagatcagc accaataaga atttgggtgc tgatggcaag gcatccacgc aagtagcagc 3001 cgaagccata ctcaagggtt ccaatgctac acagccaatg attactgccc gttccgttgt 3061 ggaacagttg gctgccaaac tcaacaataa acttaactat caacctaaag atgacgaaga 3121 aagttccgtt tccgggctac taccaaatca agccaattcc tttacaaaat acgaagaaga 3181 attggaaatt aatgatttcc cacagcaggc ccgttggaag gtgacctcga aagaagccct 3241 agcccaaatt tctgaatact ccgaggcagg tctaacagta cgtggaactt atgttccgaa 3301 tggcaaaaac ccaccagaag gtgagcgaaa attatatttg gccattgaaa gctgcagtga 3361 gttagcagtg caaaaggcaa aacgtgaaat aacccgcctt atcaaagagg aattgttgaa 3421 acttagttca gcgcatcatg tgttcaacaa gggcagatac aaggtgttgt aatttgtatc 3481 cagcagtacg aataatcttt ttgtaattgt ttttcttaaa cataaataag ctatagcaat 3541 ataagaaaaa tcgtcacgat tttacactat atgaaaaact tgaatttcga aatgaaagaa 3601 agaataataa tgaacgtaaa taacactaaa ctacaaatct gaaatctggt atctatttcc 3661 cctggcgtta tgaaaaagaa tttttcattt gtaggcaaaa aaaaaaaaaa gtattttatc 3721 tcaagcaatt aattgcagta cattgtttac acgagaaacc taaattgttt ctaaaggata 3781 gtgaattcaa gaacatgccc gacatcgaaa ggggaaaata tcatcaaaaa caaagaatat 3841 attaaagaaa aggtttttgt ttttgtcaag aggaaaacag atttataaaa gtatgtataa 3901 aatttattgt acaaaatagt taaaattgtg tgttctggat ttttaacgct tataacttaa 3961 agctactgaa aatatattgc aattgttcat aacaatgtga tgga