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LOCUS XM_013260161 4107 bp mRNA linear INV 02-SEP-2023 DDX46 (LOC106093149), transcript variant X1, mRNA. ACCESSION XM_013260161 VERSION XM_013260161.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260161.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4107 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4107 /gene="LOC106093149" /note="probable ATP-dependent RNA helicase DDX46; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106093149" CDS 168..3575 /gene="LOC106093149" /codon_start=1 /product="probable ATP-dependent RNA helicase DDX46 isoform X1" /protein_id="XP_013115615.1" /db_xref="GeneID:106093149" /translation="MSKNSSSGRDRDRDRGERERDRDYERERERDRERKRRYSRSRSR SPKDRPSRNGKRDERKRDRGERDIRDFDRRRDEKRRRPSPTQTKSKEYEREKERHLDR EREREKEKERERDRERERERQRELERQREKDQAQLPTKSPTPMIVINADSSSSSPEEE EIDKEEEQRRLELEMIKRRERIERWRAERKLKEIEANKKDIKSLLPPSATAAAKKWSL EDESEEEDNSITVDLSKEPDSPPSKFHRIKKPKEDDDDEKVDRLKSSKSIVSAAKAKI EALREEEELKGEQLKKLQKEEEEAKNEAIMVSEAAKDDDEIDPLDAYMQEVAKEVRQI NHIITQPKKQQGVVILTGAKKKTTVNKDKGELIEQNMDSLEYSSEEELEDIKDTAASL ANKHRKELAKIDHSGVEYAPFRKNFYVEVPELVRMTQQEVEKYRTELEGIQVKGKGCP KPIKTWAQCGVSKKEMDILRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAF ILPMFRHILDQPHLEDGDGPISVIMAPTRELCMQIGKDIRKFSKSLNVRVVCVYGGTG ISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQ VMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSIVCKDVEQHVAIM EDEAKFFKLLELLGIYQEKGSIIVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDR DSTILDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVTNHYEDYVHRCGRTGRAGKK GSAWTFLTPEQGRYAGDIIRAFELSETPVPEDLQKLWNDYKASQEAEGKKVHTGGGFS GKGFKFDEQEANAAKESKKLQKAALGLADSDDEEDIEQDIDQQIEQLFAAKRTVKDTS MPTPAVTMVATTPAAGSTVIAGGNNVAATTAVGSDKLELAKRLASKISTNKNLGADGK ASTQVAAEAILKGSNATQPMITARSVVEQLAAKLNNKLNYQPKDDEESSVSGLLPNQA NSFTKYEEELEINDFPQQARWKVTSKEALAQISEYSEAGLTVRGTYVPNGKNPPEGER KLYLAIESCSELAVQKAKREITRLIKEELLKLSSAHHVFNKGRYKVL" misc_feature 1359..2696 /gene="LOC106093149" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature order(1533..1535,1587..1589,1593..1601,1608..1610, 1662..1682,1998..2003) /gene="LOC106093149" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350711" misc_feature 3261..3569 /gene="LOC106093149" /note="type I K homology (KH) RNA-binding domain found in DEAD box protein 46 (DDX46) and similar proteins; Region: KH-I_DDX46; cd22473" /db_xref="CDD:411901" polyA_site 4107 /gene="LOC106093149" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acaaaacgtt tgacttgttt tgcttggtcc ggcattttta tttttctgca ataattaata 61 attttaaaaa caactgaaag gtttcgaaag caataattga cgtctaaaca cagcgcgtgt 121 taagttttaa agaattctta catttttttg aaattttatt gccagtaatg tcgaagaatt 181 cctcttctgg aagagaccgt gaccgtgata gaggagaacg cgaacgagat cgtgattatg 241 aaagagaacg cgagagggat cgcgagcgaa agcgccgcta ttcccgaagt agatctcgtt 301 caccgaagga tagaccatct cgcaatggaa aaagagatga aagaaaacga gatcgtggtg 361 aacgcgatat tcgagatttc gaccgtaggc gtgatgaaaa gcgtagaaga ccatctccca 421 cccaaacaaa gtcaaaggaa tatgagaggg aaaaagagag acacttagat agagagcgag 481 agagggaaaa ggaaaaagaa cgtgaaagag atcgtgaacg tgagagagag cggcagagag 541 aactggaaag gcaacgcgaa aaagaccaag cacaactgcc aacaaaatcc ccaacaccaa 601 tgatagtcat aaatgctgat tcaagcagtt catctcctga ggaggaagaa atagacaagg 661 aagaggaaca gcgtcgacta gaactggaaa tgataaaacg tcgtgaacgt attgaacgtt 721 ggcgggcaga gagaaaacta aaggaaatag aagcaaataa aaaggacata aaatctttat 781 tgcccccttc tgcaacagca gcagcaaaga aatggagctt agaggacgaa tcggaggagg 841 aggacaacag cattacagta gatctcagca aagagccaga ttcaccgcct tccaagttcc 901 atagaatcaa aaagcccaaa gaggatgacg acgacgaaaa agtcgataga ttgaagtctt 961 ccaagagcat tgtaagtgcg gccaaagcta aaattgaagc cttacgagaa gaggaggagc 1021 taaaaggcga acaactgaaa aagctacaaa aagaggaaga ggaagcaaaa aatgaggcaa 1081 tcatggtgag cgaagctgct aaagacgatg acgaaattga tccattagat gcctatatgc 1141 aagaggttgc caaagaagtg aggcaaatca atcatatcat aacacagccc aaaaaacaac 1201 aaggagttgt aattcttact ggcgccaaaa agaaaaccac agttaacaag gacaaaggag 1261 aactaattga acagaatatg gatagtttgg aatattccag cgaggaggaa ttggaagata 1321 taaaagatac tgctgccagc ttagctaaca agcatcgcaa agaattggcc aaaattgatc 1381 attctggtgt ggagtatgca ccattccgta aaaatttcta cgtggaagtg ccagagctag 1441 ttcgtatgac acagcaggaa gttgaaaagt atcgaaccga attggaaggt atacaggtta 1501 agggcaaagg ttgtccaaaa cctattaaga catgggctca atgcggtgtc agcaaaaaag 1561 aaatggacat cttacgaaaa cttggtttcg aaaaaccaac acctatacaa tgtcaagcga 1621 ttccagccat catgtcgggg cgggacttaa taggtattgc gaaaacaggc agtggcaaga 1681 cgctagcatt tattttacct atgtttaggc atatcttgga tcagccgcat ctagaggatg 1741 gcgatggacc tatttcagtt ataatggctc ccactcgtga gttatgcatg caaattggca 1801 aagacattcg caaattctcc aagagtttga atgtgcgagt tgtatgtgtt tatggaggaa 1861 ctggtatctc ggagcaaata gctgaactaa aacggggggc tgaaattata gtctgcaccc 1921 cagggcgtat gattgacatg ctagcagcaa actctggacg agtcacaaat ttgcggcgcg 1981 ttacttatat tgtcttggat gaagccgatc gcatgttcga catgggtttc gaaccgcagg 2041 taatgcgtat cattgacaat gtaaggcctg atcgtcagac agtaatgttt agtgcaactt 2101 tcccaagaca aatggaggcg ttagctcgtc gcatactgaa gaagcccata gaagtaattg 2161 taggtggacg atccatagtt tgcaaagatg tagaacagca cgttgccatt atggaagatg 2221 aagccaaatt ctttaaactt ttggaactat tgggtatata tcaggaaaag ggcagcatta 2281 ttgtgttcgt tgacaaacaa gagaacgccg atattctctt gaaagaccta atgaaagcct 2341 catatccctg tatgagctta catggtggca tcgatcagtt cgatcgtgat tctactatat 2401 tggattttaa atctggtaag gtgcgtcttt tgatagccac ctctgtggca gctcgaggtt 2461 tagatgtcaa agatttgata ctagttgtga actatgatgt tacaaatcac tatgaagact 2521 acgtacatag atgcggccgc acaggcagag ccggaaaaaa aggtagcgct tggactttcc 2581 ttacacccga gcaaggacga tatgctggtg atattatacg ggcttttgaa ttatctgaaa 2641 ctcctgtccc cgaagatttg caaaaacttt ggaatgatta taaggcgtcg caggaagcag 2701 agggaaagaa agtccataca ggtggaggat tcagtggtaa aggtttcaaa ttcgacgaac 2761 aagaagccaa cgcagccaag gagagtaaga aactacaaaa agcagctttg ggcctagctg 2821 attccgatga cgaggaagac atagagcaag atatcgatca acaaattgag caactttttg 2881 cagccaagag aacagtaaaa gatacctcaa tgcccacacc ggctgttaca atggtagcca 2941 ctactcccgc ggctggcagt acagtcattg ctggtggaaa taatgtcgca gccaccactg 3001 cagtcggttc cgacaaactt gagttggcca aacgtttggc ttcaaagatc agcaccaata 3061 agaatttggg tgctgatggc aaggcatcca cgcaagtagc agccgaagcc atactcaagg 3121 gttccaatgc tacacagcca atgattactg cccgttccgt tgtggaacag ttggctgcca 3181 aactcaacaa taaacttaac tatcaaccta aagatgacga agaaagttcc gtttccgggc 3241 tactaccaaa tcaagccaat tcctttacaa aatacgaaga agaattggaa attaatgatt 3301 tcccacagca ggcccgttgg aaggtgacct cgaaagaagc cctagcccaa atttctgaat 3361 actccgaggc aggtctaaca gtacgtggaa cttatgttcc gaatggcaaa aacccaccag 3421 aaggtgagcg aaaattatat ttggccattg aaagctgcag tgagttagca gtgcaaaagg 3481 caaaacgtga aataacccgc cttatcaaag aggaattgtt gaaacttagt tcagcgcatc 3541 atgtgttcaa caagggcaga tacaaggtgt tgtaatttgt atccagcagt acgaataatc 3601 tttttgtaat tgtttttctt aaacataaat aagctatagc aatataagaa aaatcgtcac 3661 gattttacac tatatgaaaa acttgaattt cgaaatgaaa gaaagaataa taatgaacgt 3721 aaataacact aaactacaaa tctgaaatct ggtatctatt tcccctggcg ttatgaaaaa 3781 gaatttttca tttgtaggca aaaaaaaaaa aaagtatttt atctcaagca attaattgca 3841 gtacattgtt tacacgagaa acctaaattg tttctaaagg atagtgaatt caagaacatg 3901 cccgacatcg aaaggggaaa atatcatcaa aaacaaagaa tatattaaag aaaaggtttt 3961 tgtttttgtc aagaggaaaa cagatttata aaagtatgta taaaatttat tgtacaaaat 4021 agttaaaatt gtgtgttctg gatttttaac gcttataact taaagctact gaaaatatat 4081 tgcaattgtt cataacaatg tgatgga