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LOCUS XM_013260048 5465 bp mRNA linear INV 02-SEP-2023 (LOC106093068), mRNA. ACCESSION XM_013260048 VERSION XM_013260048.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013260048.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5465 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5465 /gene="LOC106093068" /note="transcription elongation factor SPT6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins" /db_xref="GeneID:106093068" CDS 145..5403 /gene="LOC106093068" /codon_start=1 /product="transcription elongation factor SPT6" /protein_id="XP_013115502.1" /db_xref="GeneID:106093068" /translation="MADFIDSEAEESEEEEELDVRDKKRGKTNKAVADSSEEDEEDDE ERIREELKDLIDDNPIEEGSDGEDSDASNASKKRKKHEDDDLDDRLEDDDYDLIEENL GVKVERRKRFKRLRRIQEEESDGEDDHVDEGLAREAIAEQLFDDDENVERQSEKSQRE QPEHFEEDEEESDSDADDFIVDDEGRPIAEKKKKRRPIFTDASLQEGQDIFGVDFDYD DFSKYEEDEYEDDSEGEEYDEEGGEDDRGRVKKKSAKKVPKKTIFDLYEPSELKRGHF TDLDNEIRKTDIPERMQLRQIPVVAVPEGSSELDNEAEWIYQQAFCKPPVSQHDNMDS SRENSRKPPSAVGKIKQALEFIRNQQLEVPFISFYRKEYVKPELTTEDLWKVYYFDER WCQLLSRKNKLLILFEKMRNYQINEIMKKTDSDLAEDIRVLKDDDFERLRDVQTMEEL KDVHLHFLLYYSHEIPKMQEEERKKEKELRKQQRREKRRQNLENSEEQDVVINSDDDS GDESEIQEEHLKQAKDSGPYTMCRKAGICGFAKHFGLLPEQFAENIRDSYQRHEVDQE VISPTDLAKQYLCPKFMIIDEVIHAAKFVVARQLSKEPLLRKTIREVYFERAKIIVRP TKQGIKEIDENHACYPMKYLKNKPIRELVGEQFLRLVMAEDDNLITIDIADEIEGNTS GSYIEEAKQLYQRDEFSKVVQEWNTLRGECVELALKKMVIPDLKKELKRIVLAESKEF VLKTCCKKLANWLRVAPFNPDFSDEYTFDDWGATKGIRALGLAFVPDYSQAAFCAITN PEGDVSDYLRLPHILKRKSSYRADEKSLKMADLNNLKDFIRSKKPHVVAIGGESREAQ MIQADIQEIIKELVEEDQFPNIAVEIIDNELAKIYANSNKGASDFKEYPTLLKQAVSL ARKIQDPLLEYSQLCGPDEEILCLRYHSLQDQLPKEELLEHLYIEFINQTNEVGVDIN MAVQNSYTLNLVQFICGLGPRKGLALVKILKQTNQRLENRTQLVTLCHLGPKVFINCS GFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMAIDAMEYDDEETNPAGALEEI LESPERLKDLDLDAFAVELERQGFGNKSITLYDIRSELNCLYKDFRSPYRSPNSEELF DMLTKETPESFYVGKMVLVTVAGISHRKPQGEQLDQANPVRNDDTGNWQCPFCLKDDF PELSEVWNHFDAGACPGQATGIKVRLDNGLSGFIHIKNLSDKHVKNPEERVQAGQAIH VRIIKIDADRFSVDCSSKSSDLMDKNHEWRPRRDAFYDYEQEEVDNSKEKDQKQVRTK QQYVKRVIIHPSFHNKSYAEVVKIMETMDQGEVIVRPSSKGSDHLTVTWKVTKDIYQH IDVREEGKENAFSLGQSLLIGNEEFEDLDEIIARHVNPMAACARELLTYKYYRDTGGG LKDKMEEMLKEEKQKDPRKIHYFISASKNYPGKFLLSYLPKNKCRHEYVTVVPEGFRF RGQIFDSLNGFLKWFKDHYSDPIVTNTPVSTPHMNSVSRISNSGYDTPRITDSRSSHP IPQSVSVHTPHFSSTPGYHGGYVNTPYTPSGQTPFMTPYTTPHSSQTPRYGSNTPSPS SSTSHLMYGQSHNMRNSKESSGYHGNSQKYDANSYNKNNRSQRNNESLEWQIASDSWA RRKRVNPAIPASRTAPTEPIRAPNYSMPPPSNDYPNPNTQYVEENRVRTLDYQRSPRS IRSTPRTNTSPHSMNLGDSTPLYDEN" misc_feature 1066..1374 /gene="LOC106093068" /note="Tex-like protein N-terminal domain; Region: Tex_N; cl46305" /db_xref="CDD:480645" misc_feature 1741..3960 /gene="LOC106093068" /note="Transcriptional accessory protein Tex/SPT6 [Transcription]; Region: Tex; COG2183" /db_xref="CDD:441786" misc_feature 2467..2931 /gene="LOC106093068" /note="Crossover junction endodeoxyribonuclease RuvC and similar proteins; Region: RuvC-like; cl21482" /db_xref="CDD:473878" misc_feature 2941..3252 /gene="LOC106093068" /note="Helix-hairpin-helix domain; Region: HHH_5; cl22429" /db_xref="CDD:473956" misc_feature 4057..4674 /gene="LOC106093068" /note="SH2 domain; Region: SH2_2; pfam14633" /db_xref="CDD:464227" misc_feature <4747..>5352 /gene="LOC106093068" /note="Sec24-related protein; Provisional; Region: PTZ00395" /db_xref="CDD:185594" polyA_site 5465 /gene="LOC106093068" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaagaatttg ctttctgttt tcacaatttt tttttttact tttcacgatt tttaagaaat 61 ttgtactgta agagaaataa ctatatgttt gaagcaccat cggatttttg gtttaattag 121 gattgtgaaa tacttttatc gaagatggct gacttcatag attctgaagc agaagaatct 181 gaggaggaag aagagcttga tgttcgggat aaaaaaaggg gtaaaacaaa caaagccgta 241 gcagatagca gtgaggaaga tgaagaagat gacgaagagc gtattcgaga agaacttaaa 301 gatttgattg atgataatcc gattgaggaa ggatcggatg gagaagattc cgacgcatca 361 aatgcttcca aaaaacgtaa aaaacatgaa gatgacgatt tagatgaccg gttggaagac 421 gatgattatg atttaattga agaaaatctg ggtgtcaagg ttgagcgacg gaaacgtttc 481 aaacgtttac gcagaattca ggaagaagaa agtgatggag aagatgatca cgtcgatgaa 541 ggtttggcta gagaggccat tgctgaacaa ttgtttgatg atgatgagaa tgttgaaagg 601 caatcggaaa aaagccagag agagcagccc gaacattttg aagaagacga ggaggaatca 661 gattcagatg ccgatgactt tattgtcgat gacgaaggac ggcccatagc tgaaaagaag 721 aaaaaacgaa gaccaatatt taccgatgcg tcgcttcaag agggtcaaga tattttcggt 781 gtagattttg attatgacga tttttcaaaa tatgaggagg atgaatatga ggacgattcg 841 gagggagaag aatacgatga agagggggga gaggatgatc gtgggagagt aaaaaagaaa 901 tcagcaaaaa aagtacccaa gaagaccata ttcgatttgt acgagccaag tgagctaaag 961 agaggtcatt tcaccgatct cgacaatgag attaggaaaa ctgacattcc cgaacgcatg 1021 cagctgcggc aaattccagt tgttgctgtt cccgaaggtt cctctgagtt ggataatgaa 1081 gctgaatgga tatatcagca agccttctgc aaacctcctg tttcgcaaca tgacaatatg 1141 gacagcagta gagagaatag tagaaaaccc cccagcgctg tgggcaaaat aaaacaagcc 1201 ctcgaattta taagaaatca acagcttgag gttcctttca tatcgttcta ccgcaaggag 1261 tatgtcaagc cggaactaac aaccgaggat ttgtggaagg tgtactactt tgacgagcgt 1321 tggtgtcaat tattgagcag aaaaaataag ctgttaatac tatttgaaaa aatgcgcaac 1381 tatcagatca atgagatcat gaagaaaact gatagcgatt tggcggaaga tattcgggtg 1441 ctcaaagatg acgactttga acgtttgcgt gacgttcaga ccatggaaga actcaaggat 1501 gtgcacttac attttttgtt gtactattcc catgagatac caaaaatgca agaagaggaa 1561 cgcaaaaaag agaaagagct gaggaagcaa cagcgaaggg agaagcggcg gcaaaacctg 1621 gaaaatagtg aagagcagga tgttgtgatc aactccgacg acgatagcgg cgatgagtcg 1681 gaaattcagg aagaacactt aaagcaggcc aaggactctg ggccctatac aatgtgtcgc 1741 aaagctggta tttgtggatt tgccaaacat tttggcctac ttccagagca gtttgccgag 1801 aatattcgcg acagctatca aagacatgaa gttgatcaag aggttataag cccaacggat 1861 ctggcaaagc agtatttgtg tccaaaattt atgataatag atgaggttat ccacgccgca 1921 aagtttgttg ttgcccgaca attgtcaaag gagccgctgt taaggaagac cattcgtgag 1981 gtttatttcg aaagagccaa gatcattgtg cgtcctacaa aacaaggaat caaggaaatc 2041 gatgagaacc atgcctgcta tcccatgaaa tatctaaaga ataaaccaat acgggaactt 2101 gtcggagagc aattccttag gcttgttatg gcggaagacg acaacctcat taccattgac 2161 atagccgatg aaatcgaggg caatacatcg ggttcgtaca tagaagaagc aaaacagctt 2221 taccagcgcg atgaattttc caaagtggta caggaatgga acacgcttcg cggcgagtgc 2281 gttgagttgg ctctcaaaaa aatggttata cctgatttaa aaaaagagtt aaagcgaatt 2341 gtcttggctg agtcgaaaga atttgtactt aaaacttgct gtaaaaaatt ggccaattgg 2401 ttgagagtgg ctccattcaa tccggacttt tcagatgaat acacatttga tgattggggc 2461 gcaaccaagg gaatacgtgc attgggtttg gcgtttgttc ccgactattc acaggccgcc 2521 ttttgcgcta taaccaatcc agagggtgat gttagtgact atttacggct tccgcatatt 2581 ctaaagcgaa aatcttcgta tagagcagac gaaaagtcac tgaaaatggc cgacttgaat 2641 aacctcaagg atttcatcag aagtaagaag ccacacgttg tggccattgg tggcgaatcc 2701 cgggaagcac aaatgatcca ggcggacata caagaaatca taaaagaact tgtggaggaa 2761 gatcaatttc ccaacatagc agtggagata atagacaacg aattggcaaa gatctatgca 2821 aactcaaaca aaggtgcatc cgatttcaag gagtatccaa cgctgctcaa acaggctgtc 2881 tcattggcac gaaagataca ggatcccctt ttagagtatt ctcaactttg cgggccagac 2941 gaagaaatcc tatgtttgcg ctatcattcc ttgcaggatc aattgccaaa ggaagagcta 3001 ttagagcatc tatacattga gttcatcaat cagacaaatg aggtcggtgt cgacataaat 3061 atggctgttc aaaattcata cactttgaat ttggtgcaat ttatatgtgg cttaggtccc 3121 agaaaaggtt tagccctagt gaaaattcta aaacagacga accagcgact agagaacaga 3181 acacaactcg ttaccttgtg tcacttgggg ccaaaggtat ttataaactg ttcgggtttc 3241 attaaaatag acaccagttc cctgggcgac agtacagagg cttatgtgga agtgctggac 3301 ggatccaggg ttcatcctga aacctacgaa tgggctcgaa aaatggccat cgatgcaatg 3361 gagtacgatg acgaggaaac caatccagct ggcgctttag aggaaatttt ggaaagtcct 3421 gaaaggctca aagatcttga tctagatgca tttgctgttg aactggaacg gcagggtttt 3481 ggaaacaaaa gcataactct gtacgatata cggtcggaac tgaattgcct gtacaaagac 3541 ttcagatccc cataccgttc acctaattct gaagaactgt ttgacatgtt gacaaaagaa 3601 actcccgaat ctttttatgt gggcaaaatg gtgttggtga ctgttgctgg tatttcccat 3661 cgcaagccgc aaggcgaaca gttggaccaa gcaaatcccg ttcgaaatga tgataccggc 3721 aattggcagt gtccgttttg ccttaaagat gatttccccg agctatcaga agtatggaat 3781 catttcgatg ccggtgcttg cccaggccaa gccacaggca taaaagttag actagacaac 3841 ggtctgtctg gcttcatcca cataaaaaat ctatccgaca aacatgttaa gaatcccgag 3901 gaaagagttc aagcaggaca agctattcat gtaagaatca taaaaataga cgctgatcgc 3961 ttctccgtag actgctcatc gaaaagttcc gatctcatgg ataagaacca cgaatggcgg 4021 cccaggcgtg atgctttcta tgactatgaa caagaagaag tggacaacag caaggaaaag 4081 gatcagaaac aagttcgaac caaacagcaa tacgtgaagc gagttataat acatccctcg 4141 tttcacaaca aatcttatgc cgaagttgtt aaaattatgg aaacaatgga tcagggtgaa 4201 gtgattgtgc gaccctcaag caaaggctcc gaccacctaa cggtgacatg gaaggttacc 4261 aaggacattt atcagcacat agatgttcgc gaggagggaa aggaaaatgc tttcagtttg 4321 ggtcaaagtt tgctgattgg aaatgaggag ttcgaggact tggacgaaat tattgccaga 4381 cacgtcaatc ccatggcggc gtgtgccaga gaattgctta cctacaaata ttaccgtgac 4441 acaggcggag gcctaaagga taaaatggag gaaatgttga aggaagagaa gcaaaaagat 4501 cctagaaaaa tacattactt tatatcggcc tccaaaaatt atccaggtaa attcttgctc 4561 tcctacttgc cgaaaaataa atgtcgacat gaatacgtca cagtagttcc ggaaggtttt 4621 cgttttagag gacaaatatt tgactcactt aacggctttc tcaagtggtt caaggatcac 4681 tactcggatc cgatagtaac aaatacacct gtatcaacac ctcatatgaa ttcagtatca 4741 cgcataagca acagcggcta cgacacgcct cgaatcaccg attcaagatc ttctcatcca 4801 attccacaga gtgtttccgt tcacacgccg cacttctcca gtacgcccgg gtatcacgga 4861 ggctatgtca atacaccgta caccccgagt ggtcagactc cattcatgac gccctatacg 4921 actccgcact catctcaaac tccccgatat ggcagcaata cacctagtcc aagctcttca 4981 acttcgcatt tgatgtatgg ccaatctcac aacatgagaa attcaaagga atcatcagga 5041 taccacggca attcccagaa atacgatgca aattcgtaca ataaaaataa tcgctcccaa 5101 cgaaacaatg aaagtcttga atggcaaatt gcttcggatt cgtgggcaag aagaaaacga 5161 gtcaatcctg ccatacccgc cagccgtact gctcccacgg aacccatacg agctcccaat 5221 tattcgatgc ctcccccaag caatgattat ccaaatccta acactcagta tgtagaagag 5281 aatcgagtaa gaacattaga ctaccaacga agccctaggt ctatacgtag tactccgcgt 5341 acgaatacct ctccacattc tatgaatttg ggtgactcta ctccattata tgatgaaaac 5401 taaaatgtat ctattcaaag acctaaataa atgaataaac caataaagat atttacacaa 5461 acaca