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LOCUS XM_013259722 7644 bp mRNA linear INV 02-SEP-2023 transcript variant X4, mRNA. ACCESSION XM_013259722 VERSION XM_013259722.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013259722.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7644 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7644 /gene="LOC106092772" /note="protein ROP; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:106092772" CDS 207..2006 /gene="LOC106092772" /codon_start=1 /product="protein ROP isoform X2" /protein_id="XP_013115176.1" /db_xref="GeneID:106092772" /translation="MALKMLVGQKIMNEVVKYKPPPPKKGGTAAAAAASKANMDWRVL VVDKLGMRMVSACTKMHEISAEGITLVEDINKKREPLPSMDAIYLITPSQDSVAGLIR DFENPARPMYRYAHVFFTEVCPEELFNDLCKSCAARKIKTLKEINIAFLPYECQVYSL DSPDSFQCLYSPAFASIRAKHLERIAEQIATLCATLGEYPMVRYRTDWDRNIDLAAVV QQKLDAYKADEPTMGEGSEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLPITNDV YRFTPGPNQPEKEVLLDENDDLWVELRHQHIAVVSTQVTQNLKKFTDSKRMSSTDKAS MRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKSYQNYVDKLCRVEQDLAMGTDAEGE KIKDHMRNIVPILLDANVSNFDKVRIIALYVMIKNGITEENLTKLFTHAQLSPKDQDM VRNLSHLGINVIADSRKKTYSVPRKERITEHTYQMSRWTPVVKDIMEDCIEDKLDQRH FAFLTGRAQNPNYHAPTSARYGHWHKDKTQTQVKNVPRLIVFIVGGVCMSEMRSAYEV TNAVKNWEVVIGSSHILTPENFLSDLGSLTKED" misc_feature 330..1979 /gene="LOC106092772" /note="Sec1 family; Region: Sec1; pfam00995" /db_xref="CDD:460020" polyA_site 7644 /gene="LOC106092772" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgacaataca gctccagtta tgtggggatt tttggagaaa atacagtgaa tagttcagat 61 ctgcgaaaaa aattaacgaa cgggggttca taattttttg tgtgacggaa cagtttttaa 121 cagatctaga tcgtggccag gccagtaaaa atccgtaact caaaaataac tgaaagaaaa 181 agtgaaaaac ttaaacaaac tgcaaaatgg ctttgaaaat gttggttgga caaaaaatta 241 tgaacgaggt ggtaaaatac aaaccgccac ctcccaaaaa aggaggcaca gctgccgctg 301 cagctgcttc taaagcaaat atggattggc gtgtgctggt tgtcgataag ttgggcatgc 361 gaatggtatc agcatgcaca aaaatgcatg aaataagtgc tgagggcatt acattggtgg 421 aggacatcaa taagaaacgt gaacctttgc cctctatgga tgctatttat ttgataacac 481 catcacaaga ttcggtggct gggttgattc gtgactttga gaatccagct cgtcccatgt 541 atcgctatgc ccatgtattc ttcaccgagg tctgcccgga ggaattattt aacgatttgt 601 gtaaatcgtg cgctgcaaga aagatcaaaa ctctaaagga gataaatatc gcatttctac 661 catatgaatg ccaggtctac tcgctcgatt cgccagacag ttttcagtgt ttgtactcac 721 cggcattcgc ctcgatacgc gccaaacacc tcgagcgcat tgccgagcag atagccacgt 781 tgtgtgctac gctcggcgag tatccgatgg tgcgatatcg cactgattgg gatcgcaaca 841 tcgacttagc tgcagtcgtt cagcaaaaac tggatgcgta caaggctgat gagccaacga 901 tgggcgaggg ttcggagaaa gcacgttcac aattgttaat tttggatcgt ggttttgatt 961 gcgtatcgcc cttgttgcac gaattaacac tacaagccat ggcctatgat ttgttgccca 1021 tcaccaatga tgtctatcgc ttcacgcccg gacccaatca gccggaaaag gaggtgttgt 1081 tggacgagaa cgatgacttg tgggttgaat tgcgccatca acatattgct gtcgtgtcca 1141 cgcaggttac tcagaatttg aaaaaattca ccgattccaa gcgaatgtct tctactgata 1201 aggcatccat gcgcgatctc tcacaaatga ttaagaaaat gcctcaatat cagaaggaat 1261 tatccaagta ttccacccac ttgcatttgg ccgaagattg catgaaatcc taccagaact 1321 atgtcgataa gctgtgccgc gtcgaacaag atttagccat gggcaccgat gctgaaggtg 1381 aaaagattaa agatcatatg cgaaatattg taccgattct tttggatgcc aatgtttcca 1441 atttcgataa ggtgcgcatc attgctttgt atgtcatgat caagaatggc attactgagg 1501 aaaatctcac aaaactcttt acgcatgctc aactttcgcc taaagatcaa gatatggttc 1561 gcaatttaag ccatttgggt attaatgtta ttgctgattc acgcaaaaaa acttattcgg 1621 ttccgcgcaa ggaacgcatt accgaacaca cttatcaaat gtctcgttgg acacccgttg 1681 taaaagatat catggaggat tgcattgaag ataaattgga tcaacgtcat tttgctttcc 1741 tgactggcag ggcccagaat cccaactatc atgcccccac aagtgcccgg tatggccatt 1801 ggcacaaaga taaaacccag acacaggtta agaatgttcc acgtctcatt gtcttcattg 1861 tcggtggtgt atgcatgtcc gaaatgcgca gtgcttatga agtgaccaac gccgtcaaaa 1921 attgggaagt tgttattggc tcatcccata tactaacacc tgaaaatttc ttaagcgatt 1981 tgggctccct caccaaagag gactaaacgc gtctatcctc ctgtataact aaaacattgt 2041 atgtgtatgt agtatttgag tatttgatgc ttaacactta ttacaatagt aaattattac 2101 aatatttatg ataggtttaa aaaaacaaca acaacaacta taacaaccac aactaaagga 2161 aacgaaacat gtgtttacac taacaaatct ttatataatt atatatgcaa tttaaaaaga 2221 tgttgaaatt taagatttag cgaaaaaaac aagtgtagtg aacaaaaaac cagcgcaata 2281 gctaataata agatggatat tgaaagacaa cacttcaaaa atgtatggcg tttagtagga 2341 ttccatagac cactcttttt ttctcgttct aatttttaaa cataatcaac aaaaattata 2401 aaattacatt ttgaacatta cttgcatcct tttgaaataa aagagaaagt acattttcat 2461 aacgaaaaat aaaacttaaa aaaagaataa tgataccaat tttgaagaaa aatagttatg 2521 caatgttaaa gatctagaag atacatgcag aaaaataaga gctgatggct ggcagcccat 2581 agctgtacta tgcctgctgg tctaggggct catattccat tcgagcccag tatagaataa 2641 tgtttgaggt tttatggcgt tattaagctt tatctgatta taacgaatta aatgtgtttt 2701 tgtatttaaa taaaatgtgt attttagtat agtttacaca actctatata tataaatata 2761 tgaaaaaaca acaaaactat attcaagaaa gacaaaaaat aaataaatta aacataatta 2821 acacttctaa ctatacgaat tcgtatataa actctctctt ctctttaaaa tttattgaaa 2881 ataaaaacca aaactaaaaa tgttacaaca cacacaacac atcatcatag aattttctaa 2941 aagcgattga agaatctaga aaattatgaa aaaagtagaa aaattaggtt tttcaaagtt 3001 tttcccttaa caaataatta aaaaacacat gttaatttaa aacctgtgac aaatgtgata 3061 agagaacagt aacataattg aaattagata tcatatttgg agatttcaaa gcttttttga 3121 attcctcaaa cgttttttcc caaaatggtc atttgcagtg cattgttcaa ctgccgaagg 3181 gcccttttat tattgatgaa tctccatgat agtgtaaaca acaacaacaa cgatagctaa 3241 attcatgaat gattattgat tttctgcaaa aatcctcata tgaacaacac aaaaattctt 3301 ttcttctgag gtataagttg aaagtgagtg cagatttata ccaatttcct gtagatttta 3361 aaaagttttc aagcttttgt gtcatttcgg aaaacgtttt ttctaaaaac tgtccaaaaa 3421 tgttttctac tgactttgaa aatattatag catgcacctt ttgtatgtat gctggttccc 3481 gcaaacacag ttaccagttg ttatcaaatt gtgattcatt tttatatctt gcttagattt 3541 tttataatac attatagtct tcttacacca tgcatacatt ttatgcatct cctttaaatc 3601 tttttaccaa catcctaaat gtataggagt aatatatgat tttccaaaac cagcgagttc 3661 ttaaattatt ttatttagtc aaagacaaat ggtaataagc actttccaat gaaccattgt 3721 aataaaaaca gaaactaaaa aaattcatgt tcatcctatt ctccaggtga tatgctaaag 3781 tcaaagccct aactgctatg taaacaaaaa taatatataa aaattttagc aatttgccca 3841 tataacgtcg aatatcgaaa gggatgaaga aacatgaaac atttcttaga tttaagtaaa 3901 agaagaagca agaaaataac agcaaaattt tgaagccaca acaaatatgt atttgaaaca 3961 agtcctctta gcggctaatt aagcaaaaga ggacccagat tgagaaaaaa attaaacaat 4021 ataataacaa acatttaaaa atatataaaa attattaatc aaaataaatg tctttaaact 4081 tataacacaa aacatattat ttaaaaaaga caaacaataa gtattttatt tttattcgat 4141 aacatttccc gtatttatga agcaaaagaa aaaaaacaaa aattaagggg cagtagagca 4201 gttccgataa cattcttggt gcagtctgct gccaccttca ggaaaatcca ttgcatctta 4261 tatacacaca tatgcaatat ttatttcagc agtaaataat tggtcgtgga accttgagca 4321 caattaaagc aacatatcta tcaacaactg gatatgctat catggtattc cgcaaaaaaa 4381 aaaaaaacat ttaataacac aatataatga taaatgtatt tcaaaaatat ttgcatgcta 4441 ttccacaaac aattattctt attattatgc atacaacaac aaaaatctaa gtatataaca 4501 aaaaaatttt caaattttaa acgattatcc tgtttcacaa cataaacgta tgaatgaagg 4561 cacggctaat cgtttattat atggtaacgc atatatattg aaaacaaaat tatttaatgt 4621 tcaatcacac atattatata aaaatatata tttaaacaaa gaatctaaag atgtattcgt 4681 atcccagccc atccttatca aatccgataa aacccacata ccacttagag aacaactctc 4741 tcctcgaaga cgatccacga caatcgttct tccatctttc gctaggtaga gttgttagag 4801 actgctaaac cgttataaga ggaccttaag acaatgaatt gaacatgttt cgcaacactt 4861 ctatgttatc tagggccctc attctggttt taggttttaa cgaaatcgca atttattccc 4921 aaacaaatat tacaaccaca tccttataat aaaccatata attaaacaat tgaaattacg 4981 aaaggtttat tgaaaataat ataaatggag cagattagtt ttaagcgctg caacagcata 5041 attaaccata aataacatgc atcgttctgg taatctaaac tatggggaca tttttagaag 5101 cagagtttcg aattggagtt ttttgtagaa aggcaaagga ggcaatatga ggccactcca 5161 tcgttcatta tggaaaatta aatgagcgcc cttaatgttc ttagggtgat aagggatata 5221 tatcttgcca acaaccttta aagtacgaca aatcttgcta gcactttact atccaaggaa 5281 aatgatgaaa ccaacctaaa actttccaca tgaagaaacc tgagtaaaat gtactcaacg 5341 gcactaatcg gacataaaaa tagcagccag tagtgccaac acgcaaaatg taagactttt 5401 cacttcctta taaatcatca atttggttat gatactaatc aatttctgtt taagaacatc 5461 atgttataaa cccatttgcc aaccaaagca aggcaaatta atatttatga agccaatctt 5521 atcgccttta atgttcttag ggtgataagg gatatatata ttgccaacac cctttaaagt 5581 acggcaaatg ttactagccg tatacaagga caatggttta aacaggatga agctaaccca 5641 aaactttcca catgaagaag cctcagtaaa atgtactaaa cggcactaat tcgatataaa 5701 aacagcagcc aatagtgtca acaggcaaaa tgtaagactt ttgacctaat caatttctgt 5761 ttaagcacat cacgttatga acccatttgt caaccaaagc aaggcatatt aatatttatg 5821 aaaccaatct cagaggtttg ttgaaatttg aatcaaagtt tgagaagcat aggaaatgat 5881 ctgtaattag catgcctaaa tatttggttc actatccgct aaacaattag ttacgacata 5941 tactattgaa agtattaagg aaaagtttta accactaggc aaatatctta ggaaacgtat 6001 gcttttacag ctgattttgt gtaaacatcg cctagtttta gatttttctc atctggcatt 6061 cgcctttaag gctatggcta tgatgccgct gtaaaactcg caaatcattt gacgctacac 6121 atgtaagtta acaaccaaat ccaaatttct agtttgaata agaattacca ataaaaagta 6181 tttaaattaa taattaaatg cacaaaaaaa actaaataca gatatatcat cggagtaatg 6241 ttatcctgtt ccatacgcca ttttcgagtt ctttgagttg gcatcagttt ttgtgacttt 6301 aaagcactct atatatctaa aataatattg aggtgtaaat atggcccatt tcattgcata 6361 ctgcaagtgc gtttatctca aaatcaataa attggcgttt ggagcaaaat tacattacaa 6421 cgacgatatg tatttctggc tcaagggttt tcgtgttagt tataatttct attcaagtta 6481 taaaacaaat gttggactca gttttctgtg ctctagaaat atccccaagc taggatgttg 6541 tcaagatttt tcatgcacat caaaggtgat tttggcatgt ctagtctccg agaaaagggc 6601 gcatgcgtag tgataagatt tatgttcttg tatttcacac gtatcactta taaaaataat 6661 aaacatttaa attgaaatta attaaaatac tcccaaaaaa accacttata aacaaagaag 6721 aaaaaaacaa gcttagttgt agaaccatta aaaattacca tactggcaag ttaaagaatt 6781 gttacaaaat aatttatggc ctataaggct ggtatttgaa aggtcttaat ataactcgta 6841 aaaacacaaa aacacatata gaaccaggag aagaaaaaag aacaacaacc aaaaatagca 6901 agatgaaata aatggaaata gcttttgagt atattaaata actatgatca aacaacagca 6961 aaccgcatta ttaatgagta ataatgacgg ctctagtttg taggaacaag acataaacac 7021 aattcgtatt gagatctgta ttaaccaaca atatgaagaa tttccccgcc agacttgggg 7081 tggtctgccg catcaaatgc cgaccgactg ccctccgcca ccaaaatgcg gtgtaggagt 7141 tattctggaa gctaatcaat atcaatgaag aacatctctt gcagcagccc ttgggaggac 7201 ctactgcgca aggttcaatt aaagtctcgg gcatttactt cattattttt actctaaaat 7261 attgtttttt atttcctaat atttacttac taacacaaca aataatacac ttttattatt 7321 acatattata tgactaacta acaagaaaaa tcgtttatta ttaaaaaaaa aaaataacta 7381 tatttattag tatatgaaat ttgcaatttt tttgaaataa caattaaaag aattttttga 7441 aatgaaagag agaatatatt attattaatg tctattgtaa taatccgaac aattattgct 7501 tacaaaaaca taaacatata taagagtatc aatattatcc cccttagtgt gtaagaacag 7561 aataaatgtt gttgtataac caacaacata tttcaacaaa aacaaaaaat acaacataat 7621 aagaaatata taatcaacaa ctaa