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LOCUS XM_013259715 7571 bp mRNA linear INV 02-SEP-2023 transcript variant X3, mRNA. ACCESSION XM_013259715 VERSION XM_013259715.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013259715.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7571 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7571 /gene="LOC106092772" /note="protein ROP; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:106092772" CDS 207..2009 /gene="LOC106092772" /codon_start=1 /product="protein ROP isoform X1" /protein_id="XP_013115169.1" /db_xref="GeneID:106092772" /translation="MALKMLVGQKIMNEVVKYKPPPPKKGGTAAAAAASKANMDWRVL VVDKLGMRMVSACTKMHEISAEGITLVEDINKKREPLPSMDAIYLITPSQDSVAGLIR DFENPARPMYRYAHVFFTEAVPDSIFEMIKAEKHLVNHITCFREINIAFLALESQVYS LDSPDSFQCLYSPAFASIRAKHLERIAEQIATLCATLGEYPMVRYRTDWDRNIDLAAV VQQKLDAYKADEPTMGEGSEKARSQLLILDRGFDCVSPLLHELTLQAMAYDLLPITND VYRFTPGPNQPEKEVLLDENDDLWVELRHQHIAVVSTQVTQNLKKFTDSKRMSSTDKA SMRDLSQMIKKMPQYQKELSKYSTHLHLAEDCMKSYQNYVDKLCRVEQDLAMGTDAEG EKIKDHMRNIVPILLDANVSNFDKVRIIALYVMIKNGITEENLTKLFTHAQLSPKDQD MVRNLSHLGINVIADSRKKTYSVPRKERITEHTYQMSRWTPVVKDIMEDCIEDKLDQR HFAFLTGRAQNPNYHAPTSARYGHWHKDKTQTQVKNVPRLIVFIVGGVCMSEMRSAYE VTNAVKNWEVVIGSSHILTPENFLSDLGSLTKED" misc_feature 330..1982 /gene="LOC106092772" /note="Sec1 family; Region: Sec1; pfam00995" /db_xref="CDD:460020" polyA_site 7571 /gene="LOC106092772" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgacaataca gctccagtta tgtggggatt tttggagaaa atacagtgaa tagttcagat 61 ctgcgaaaaa aattaacgaa cgggggttca taattttttg tgtgacggaa cagtttttaa 121 cagatctaga tcgtggccag gccagtaaaa atccgtaact caaaaataac tgaaagaaaa 181 agtgaaaaac ttaaacaaac tgcaaaatgg ctttgaaaat gttggttgga caaaaaatta 241 tgaacgaggt ggtaaaatac aaaccgccac ctcccaaaaa aggaggcaca gctgccgctg 301 cagctgcttc taaagcaaat atggattggc gtgtgctggt tgtcgataag ttgggcatgc 361 gaatggtatc agcatgcaca aaaatgcatg aaataagtgc tgagggcatt acattggtgg 421 aggacatcaa taagaaacgt gaacctttgc cctctatgga tgctatttat ttgataacac 481 catcacaaga ttcggtggct gggttgattc gtgactttga gaatccagct cgtcccatgt 541 atcgctatgc ccatgtattc ttcaccgagg ccgtgcccga cagtatattc gaaatgataa 601 aagccgaaaa gcacttagtc aatcacatta catgtttcag agagatcaat attgcatttc 661 ttgcccttga aagtcaggtc tactcgctcg attcgccaga cagttttcag tgtttgtact 721 caccggcatt cgcctcgata cgcgccaaac acctcgagcg cattgccgag cagatagcca 781 cgttgtgtgc tacgctcggc gagtatccga tggtgcgata tcgcactgat tgggatcgca 841 acatcgactt agctgcagtc gttcagcaaa aactggatgc gtacaaggct gatgagccaa 901 cgatgggcga gggttcggag aaagcacgtt cacaattgtt aattttggat cgtggttttg 961 attgcgtatc gcccttgttg cacgaattaa cactacaagc catggcctat gatttgttgc 1021 ccatcaccaa tgatgtctat cgcttcacgc ccggacccaa tcagccggaa aaggaggtgt 1081 tgttggacga gaacgatgac ttgtgggttg aattgcgcca tcaacatatt gctgtcgtgt 1141 ccacgcaggt tactcagaat ttgaaaaaat tcaccgattc caagcgaatg tcttctactg 1201 ataaggcatc catgcgcgat ctctcacaaa tgattaagaa aatgcctcaa tatcagaagg 1261 aattatccaa gtattccacc cacttgcatt tggccgaaga ttgcatgaaa tcctaccaga 1321 actatgtcga taagctgtgc cgcgtcgaac aagatttagc catgggcacc gatgctgaag 1381 gtgaaaagat taaagatcat atgcgaaata ttgtaccgat tcttttggat gccaatgttt 1441 ccaatttcga taaggtgcgc atcattgctt tgtatgtcat gatcaagaat ggcattactg 1501 aggaaaatct cacaaaactc tttacgcatg ctcaactttc gcctaaagat caagatatgg 1561 ttcgcaattt aagccatttg ggtattaatg ttattgctga ttcacgcaaa aaaacttatt 1621 cggttccgcg caaggaacgc attaccgaac acacttatca aatgtctcgt tggacacccg 1681 ttgtaaaaga tatcatggag gattgcattg aagataaatt ggatcaacgt cattttgctt 1741 tcctgactgg cagggcccag aatcccaact atcatgcccc cacaagtgcc cggtatggcc 1801 attggcacaa agataaaacc cagacacagg ttaagaatgt tccacgtctc attgtcttca 1861 ttgtcggtgg tgtatgcatg tccgaaatgc gcagtgctta tgaagtgacc aacgccgtca 1921 aaaattggga agttgttatt ggctcatccc atatactaac acctgaaaat ttcttaagcg 1981 atttgggctc cctcaccaaa gaggactaaa cgcgtctatc ctcctgtata actaaaacat 2041 tgtttaaaaa aacaacaaca acaactataa caaccacaac taaaggaaac gaaacatgtg 2101 tttacactaa caaatcttta tataattata tatgcaattt aaaaagatgt tgaaatttaa 2161 gatttagcga aaaaaacaag tgtagtgaac aaaaaaccag cgcaatagct aataataaga 2221 tggatattga aagacaacac ttcaaaaatg tatggcgttt agtaggattc catagaccac 2281 tctttttttc tcgttctaat ttttaaacat aatcaacaaa aattataaaa ttacattttg 2341 aacattactt gcatcctttt gaaataaaag agaaagtaca ttttcataac gaaaaataaa 2401 acttaaaaaa agaataatga taccaatttt gaagaaaaat agttatgcaa tgttaaagat 2461 ctagaagata catgcagaaa aataagagct gatggctggc agcccatagc tgtactatgc 2521 ctgctggtct aggggctcat attccattcg agcccagtat agaataatgt ttgaggtttt 2581 atggcgttat taagctttat ctgattataa cgaattaaat gtgtttttgt atttaaataa 2641 aatgtgtatt ttagtatagt ttacacaact ctatatatat aaatatatga aaaaacaaca 2701 aaactatatt caagaaagac aaaaaataaa taaattaaac ataattaaca cttctaacta 2761 tacgaattcg tatataaact ctctcttctc tttaaaattt attgaaaata aaaaccaaaa 2821 ctaaaaatgt tacaacacac acaacacatc atcatagaat tttctaaaag cgattgaaga 2881 atctagaaaa ttatgaaaaa agtagaaaaa ttaggttttt caaagttttt cccttaacaa 2941 ataattaaaa aacacatgtt aatttaaaac ctgtgacaaa tgtgataaga gaacagtaac 3001 ataattgaaa ttagatatca tatttggaga tttcaaagct tttttgaatt cctcaaacgt 3061 tttttcccaa aatggtcatt tgcagtgcat tgttcaactg ccgaagggcc cttttattat 3121 tgatgaatct ccatgatagt gtaaacaaca acaacaacga tagctaaatt catgaatgat 3181 tattgatttt ctgcaaaaat cctcatatga acaacacaaa aattcttttc ttctgaggta 3241 taagttgaaa gtgagtgcag atttatacca atttcctgta gattttaaaa agttttcaag 3301 cttttgtgtc atttcggaaa acgttttttc taaaaactgt ccaaaaatgt tttctactga 3361 ctttgaaaat attatagcat gcaccttttg tatgtatgct ggttcccgca aacacagtta 3421 ccagttgtta tcaaattgtg attcattttt atatcttgct tagatttttt ataatacatt 3481 atagtcttct tacaccatgc atacatttta tgcatctcct ttaaatcttt ttaccaacat 3541 cctaaatgta taggagtaat atatgatttt ccaaaaccag cgagttctta aattatttta 3601 tttagtcaaa gacaaatggt aataagcact ttccaatgaa ccattgtaat aaaaacagaa 3661 actaaaaaaa ttcatgttca tcctattctc caggtgatat gctaaagtca aagccctaac 3721 tgctatgtaa acaaaaataa tatataaaaa ttttagcaat ttgcccatat aacgtcgaat 3781 atcgaaaggg atgaagaaac atgaaacatt tcttagattt aagtaaaaga agaagcaaga 3841 aaataacagc aaaattttga agccacaaca aatatgtatt tgaaacaagt cctcttagcg 3901 gctaattaag caaaagagga cccagattga gaaaaaaatt aaacaatata ataacaaaca 3961 tttaaaaata tataaaaatt attaatcaaa ataaatgtct ttaaacttat aacacaaaac 4021 atattattta aaaaagacaa acaataagta ttttattttt attcgataac atttcccgta 4081 tttatgaagc aaaagaaaaa aaacaaaaat taaggggcag tagagcagtt ccgataacat 4141 tcttggtgca gtctgctgcc accttcagga aaatccattg catcttatat acacacatat 4201 gcaatattta tttcagcagt aaataattgg tcgtggaacc ttgagcacaa ttaaagcaac 4261 atatctatca acaactggat atgctatcat ggtattccgc aaaaaaaaaa aaaacattta 4321 ataacacaat ataatgataa atgtatttca aaaatatttg catgctattc cacaaacaat 4381 tattcttatt attatgcata caacaacaaa aatctaagta tataacaaaa aaattttcaa 4441 attttaaacg attatcctgt ttcacaacat aaacgtatga atgaaggcac ggctaatcgt 4501 ttattatatg gtaacgcata tatattgaaa acaaaattat ttaatgttca atcacacata 4561 ttatataaaa atatatattt aaacaaagaa tctaaagatg tattcgtatc ccagcccatc 4621 cttatcaaat ccgataaaac ccacatacca cttagagaac aactctctcc tcgaagacga 4681 tccacgacaa tcgttcttcc atctttcgct aggtagagtt gttagagact gctaaaccgt 4741 tataagagga ccttaagaca atgaattgaa catgtttcgc aacacttcta tgttatctag 4801 ggccctcatt ctggttttag gttttaacga aatcgcaatt tattcccaaa caaatattac 4861 aaccacatcc ttataataaa ccatataatt aaacaattga aattacgaaa ggtttattga 4921 aaataatata aatggagcag attagtttta agcgctgcaa cagcataatt aaccataaat 4981 aacatgcatc gttctggtaa tctaaactat ggggacattt ttagaagcag agtttcgaat 5041 tggagttttt tgtagaaagg caaaggaggc aatatgaggc cactccatcg ttcattatgg 5101 aaaattaaat gagcgccctt aatgttctta gggtgataag ggatatatat cttgccaaca 5161 acctttaaag tacgacaaat cttgctagca ctttactatc caaggaaaat gatgaaacca 5221 acctaaaact ttccacatga agaaacctga gtaaaatgta ctcaacggca ctaatcggac 5281 ataaaaatag cagccagtag tgccaacacg caaaatgtaa gacttttcac ttccttataa 5341 atcatcaatt tggttatgat actaatcaat ttctgtttaa gaacatcatg ttataaaccc 5401 atttgccaac caaagcaagg caaattaata tttatgaagc caatcttatc gcctttaatg 5461 ttcttagggt gataagggat atatatattg ccaacaccct ttaaagtacg gcaaatgtta 5521 ctagccgtat acaaggacaa tggtttaaac aggatgaagc taacccaaaa ctttccacat 5581 gaagaagcct cagtaaaatg tactaaacgg cactaattcg atataaaaac agcagccaat 5641 agtgtcaaca ggcaaaatgt aagacttttg acctaatcaa tttctgttta agcacatcac 5701 gttatgaacc catttgtcaa ccaaagcaag gcatattaat atttatgaaa ccaatctcag 5761 aggtttgttg aaatttgaat caaagtttga gaagcatagg aaatgatctg taattagcat 5821 gcctaaatat ttggttcact atccgctaaa caattagtta cgacatatac tattgaaagt 5881 attaaggaaa agttttaacc actaggcaaa tatcttagga aacgtatgct tttacagctg 5941 attttgtgta aacatcgcct agttttagat ttttctcatc tggcattcgc ctttaaggct 6001 atggctatga tgccgctgta aaactcgcaa atcatttgac gctacacatg taagttaaca 6061 accaaatcca aatttctagt ttgaataaga attaccaata aaaagtattt aaattaataa 6121 ttaaatgcac aaaaaaaact aaatacagat atatcatcgg agtaatgtta tcctgttcca 6181 tacgccattt tcgagttctt tgagttggca tcagtttttg tgactttaaa gcactctata 6241 tatctaaaat aatattgagg tgtaaatatg gcccatttca ttgcatactg caagtgcgtt 6301 tatctcaaaa tcaataaatt ggcgtttgga gcaaaattac attacaacga cgatatgtat 6361 ttctggctca agggttttcg tgttagttat aatttctatt caagttataa aacaaatgtt 6421 ggactcagtt ttctgtgctc tagaaatatc cccaagctag gatgttgtca agatttttca 6481 tgcacatcaa aggtgatttt ggcatgtcta gtctccgaga aaagggcgca tgcgtagtga 6541 taagatttat gttcttgtat ttcacacgta tcacttataa aaataataaa catttaaatt 6601 gaaattaatt aaaatactcc caaaaaaacc acttataaac aaagaagaaa aaaacaagct 6661 tagttgtaga accattaaaa attaccatac tggcaagtta aagaattgtt acaaaataat 6721 ttatggccta taaggctggt atttgaaagg tcttaatata actcgtaaaa acacaaaaac 6781 acatatagaa ccaggagaag aaaaaagaac aacaaccaaa aatagcaaga tgaaataaat 6841 ggaaatagct tttgagtata ttaaataact atgatcaaac aacagcaaac cgcattatta 6901 atgagtaata atgacggctc tagtttgtag gaacaagaca taaacacaat tcgtattgag 6961 atctgtatta accaacaata tgaagaattt ccccgccaga cttggggtgg tctgccgcat 7021 caaatgccga ccgactgccc tccgccacca aaatgcggtg taggagttat tctggaagct 7081 aatcaatatc aatgaagaac atctcttgca gcagcccttg ggaggaccta ctgcgcaagg 7141 ttcaattaaa gtctcgggca tttacttcat tatttttact ctaaaatatt gttttttatt 7201 tcctaatatt tacttactaa cacaacaaat aatacacttt tattattaca tattatatga 7261 ctaactaaca agaaaaatcg tttattatta aaaaaaaaaa ataactatat ttattagtat 7321 atgaaatttg caattttttt gaaataacaa ttaaaagaat tttttgaaat gaaagagaga 7381 atatattatt attaatgtct attgtaataa tccgaacaat tattgcttac aaaaacataa 7441 acatatataa gagtatcaat attatccccc ttagtgtgta agaacagaat aaatgttgtt 7501 gtataaccaa caacatattt caacaaaaac aaaaaataca acataataag aaatatataa 7561 tcaacaacta a