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LOCUS XM_013256940 4705 bp mRNA linear INV 02-SEP-2023 (LOC106090664), transcript variant X3, mRNA. ACCESSION XM_013256940 VERSION XM_013256940.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013256940.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4705 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4705 /gene="LOC106090664" /note="AP-3 complex subunit delta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106090664" CDS 439..3612 /gene="LOC106090664" /codon_start=1 /product="AP-3 complex subunit delta isoform X1" /protein_id="XP_013112394.1" /db_xref="GeneID:106090664" /translation="MALKKVKGNFERMFDKNLTDLVRGIRNNKDNEAKYISQCIEEIK QELRQDNINVKCNAVAKLTYIQMLGYDISWAGFNIIEVMSSSRFTCKRIGYLAASQCF HPDSELLMLTTNMIRKDLNSQNQYDAGVALSGLSCFISPDLSRDLANDIMTLMSSTKP YLRMKAVLMMYKVFLRYPEALKPAFPKLKEKLEDPDPGVQSAAVNVVCELARKNPKNY LPLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLL YECINTVIAVLISISSGMPNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTH PKSVQAHKDLILACLDDKDESIRLRALDLLYGMVSKKNLMEIVKRLLGHMERAEGSSY RDELLYKVIEICSQSSYLYVTNFEWYLTVLVELIQLEAGSKHGRLIAEQLLDVAIRVP VVRQFAVKEMTSLLDTFSISSQSNSMYEVLYAAAWIVGEFSNELEDAEHTLNILLRPR QVPGHIQSVFVQNVIKLFTRLATTCLENEDPDGLVRLCNQVLEKLQEFNSSDDIEVQE RANSACILIDMLRAQFDEANNETCNQHADFIGTDDHPIAMPRSSTIPTLAIEIVQEMA LLFAGDLIPVAPKAQRKVPLPDGLDLDEWINPPPEDDSDESSHDDKEELFVSASAQLD EGKRRPSEELTPEQIERQRMQRMIEQSNNPHYLKSSPSTPDVGSSNARSLSSNNSQHN ADQYDNIDDIPITELSLDIPLKVGATKRSDQYILQEKANSKEKKKHKKSKKSKKSKSK TTYNSTSESEDEPKPMHIVNTTLDMPEGVALSDGDDKDGKFDSDDPHRALDIELDIPD LEEPKYRNSKKDSTEHMIATEKEKKSKSSSTTSHKKEKKKDKDKENDKDKDKSSHKKK SSTKSSSLAVNNNEVNSANLLGTSLEELEAPINISNAITNTTAAIIPPLETTLEKRKK HKSHKSSTSTKELKMLQNNDNDPIDTSTKTTSKKKKDKKEKEHHHHHKDKKKSSHHQH HHHHKSSAATNDYEEALGISTPSKEIF" misc_feature 532..2169 /gene="LOC106090664" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2515..2997 /gene="LOC106090664" /note="AP-3 complex subunit delta-1; Region: AP3D1; pfam06375" /db_xref="CDD:461889" polyA_site 4705 /gene="LOC106090664" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaacttgcat ggagtggtgg aatggccttt caccaaccag aaaaccatca aacccaacaa 61 cgtcgtcgtc gtcgcgaatc cctgggactc ttgaaccact tggaatgctc ttccgtattt 121 ggactggaat gcaccgctcc ggatttgact tgtggcgaaa ctaactaaaa aaagtgcatt 181 aattgaattt tccttcgtcg tatttttatc ttatcctctt cgacaatgta aaaattagtt 241 gtcagtggtt ctcttatggt gcaagtgacc aacagcatac ccattggaag acaaagaaac 301 tatacattac aaatcaccaa attaccgtaa aaatacatat tcatgtgcaa atatataaaa 361 gaaaattgaa agaaagttag aaagaaaaat ctcgttcgca agttcagaag tgagattggt 421 tcaatagaaa agtgaaaaat ggctctgaaa aaagttaaag gcaatttcga acgtatgttt 481 gataaaaacc tcaccgatct ggtacgaggc atacgtaata ataaggataa cgaggctaaa 541 tatatttccc agtgcattga agaaattaaa caggaactga ggcaggacaa tataaacgta 601 aaatgtaatg cagtggccaa attaacttat atacaaatgc ttggctatga tatatcatgg 661 gctggcttta atataatcga agtaatgagt tcttcgcgct ttacttgcaa acgtattggt 721 tatttggctg ccagtcaatg ttttcatccc gatagcgagc tccttatgtt aaccacgaac 781 atgatacgca aagatttgaa ctcacaaaat caatatgatg ctggtgtagc attaagtggt 841 ctcagttgtt ttatatcccc cgacttatcg agggacttag ccaatgatat tatgacgttg 901 atgagttcaa ccaaacccta tctgcgcatg aaagccgtcc ttatgatgta taaagtattt 961 cttcgttatc cggaagcttt aaaacctgca tttcctaaac ttaaagagaa actggaagac 1021 cctgatccag gcgtacaatc cgctgccgtt aatgttgttt gtgaattagc acgtaagaat 1081 cctaaaaatt atcttccttt agctcccgta ttttttaaac taatgacaac atcaaccaat 1141 aattggatgc ttattaaaat tattaaattg tttggcgctt taactccttt agaaccccgg 1201 ctaggaaaga aattaataga accactcaca aatcttatcc atagtacatc ggctatgagt 1261 ttattgtacg aatgcatcaa tacggttata gcagtcttga tcagcatcag tagtggtatg 1321 cccaaccata gtgcctctat acaactttgt gtccaaaagt tgcgtatcct aattgaagac 1381 tcggatcaaa atttgaaata tttgggtctg ttggccatgt cgaaaatctt aaaaacgcat 1441 cccaaaagtg ttcaagcgca taaggattta attttggctt gcctagacga caaagatgaa 1501 tcaattagac tgagagcttt ggatttgctc tatggcatgg tatcgaaaaa gaatctcatg 1561 gaaatcgtca aacgtctctt gggacatatg gagagagctg agggttccag ttatcgtgat 1621 gaattactct acaaagtaat tgaaatttgt tcgcaaagct cataccttta tgttaccaat 1681 ttcgagtggt atttaacagt gctggtggag ttgatacaat tggaggcggg ttcaaaacat 1741 ggtcgtttga tagcggaaca attattggat gttgcgatta gagtgcctgt tgtgcgtcaa 1801 ttcgctgtta aagaaatgac gtctctcttg gatacgtttt ccatttcatc gcaaagcaat 1861 tcgatgtatg aggttctata tgcggccgcc tggattgtag gtgaattttc aaatgaattg 1921 gaggatgccg agcataccct aaacatattg ctgcggcctc gtcaagtgcc gggacatata 1981 caaagtgttt ttgtacaaaa tgtcatcaag ttgtttacgc gattggccac aacatgcctg 2041 gaaaacgagg atcctgatgg tttagtacgg ttatgcaatc aagtattaga gaaactacaa 2101 gaatttaata gctccgatga tatcgaagta caggaacgtg ccaattccgc ttgcattcta 2161 atcgatatgt tacgagccca atttgacgag gccaataacg aaacgtgcaa tcaacatgct 2221 gatttcattg gcaccgacga ccatcccatt gcgatgccca gatcttcaac tatacccaca 2281 ttggcaattg aaattgttca agaaatggca ctactctttg ccggtgattt aatacctgtg 2341 gcacccaaag cccaacgcaa agttccttta cctgatggcc ttgatttgga tgagtggatt 2401 aatccacctc ccgaagatga tagtgatgaa tcgtcgcacg atgataaaga ggaactcttc 2461 gttagtgcat cggctcagtt ggacgaaggc aaacggagac caagtgaaga gttgacaccc 2521 gagcaaattg aacgtcaacg catgcaacgt atgatcgaac aatcgaataa tccacactac 2581 ctgaaatcat ccccatccac gccagatgtt ggctcatcaa atgccagatc attgagtagt 2641 aataattcgc aacataatgc cgatcaatac gataatatcg atgatatacc cataacagag 2701 ttgtcattgg atattccatt gaaagtggga gcaacaaaac gatctgatca atatatactg 2761 caagagaaag ccaacagtaa ggagaagaag aaacataaaa aatcgaaaaa gagtaaaaaa 2821 tcaaaatcaa aaaccactta caattccact tccgaatctg aagatgaacc caaaccgatg 2881 catattgtca acaccacatt ggatatgcct gaaggtgttg cattgtctga tggcgatgat 2941 aaggatggta aatttgattc agatgatccc catagagcat tggatattga attagatata 3001 cccgatttgg aggaacctaa atatcgaaat agtaaaaagg attccaccga acatatgatt 3061 gcaacggaaa aagagaaaaa atcaaaatcg tcctcgacga ctagccacaa aaaggaaaaa 3121 aagaaagaca aggataagga gaatgacaag gataaagaca agtcgtcaca taagaaaaag 3181 tcatcaacga aatcttcgtc gttagctgta aataataacg aagtgaacag tgccaatctg 3241 ttgggaactt ctctggaaga attggaagca cccattaaca tttccaatgc aatcaccaac 3301 acaaccgccg caatcattcc tccattagaa acgaccctgg agaagcgaaa gaaacacaag 3361 tcccacaaat catctacgtc aacaaaggaa ttgaaaatgt tgcaaaataa cgataatgac 3421 cccattgata cttctactaa gactacctcc aaaaagaaga aggataagaa ggaaaaggag 3481 caccatcacc atcacaagga caagaaaaag tctagccacc accagcacca ccaccaccac 3541 aagtcatctg cggcaaccaa tgactatgag gaagccctgg gcatttcaac gcccagtaaa 3601 gaaatttttt aagttggact tttgtattca atattttatg aaaagtcaaa gtaatatttt 3661 taattgattt attttagtac tgaacagaaa tatttatata aatatataat caatgcatac 3721 tgatgaagca agtaaaaaga aaaaaatgcc ctgattttga atctatttat tcgttttatt 3781 tttttctcaa agaaaaaaat tgttggcggt ttttgttata taaaaaataa tttgtgtaaa 3841 caaaaaaaag gaaaaaacaa aagaacacgt actgtaaaac aatttatgaa caattattta 3901 caaaatcaaa tatacataaa aagcatacat atttagttta tagtaaaaga agaggaaccc 3961 cctaagaaga atatttcaaa tgcaaaatat taatatttta tatataatca tatattgtat 4021 aaattatatt taataaccaa taaacaataa tattccctac atacatacat gcgatatata 4081 aaaattcaaa atacaattgg cataagcatc tctctgaacg cagaacaacc agcaacaccc 4141 aatgatcaat ctctaattac gtccataatt ttaaaaatac atgcttacat gcacatttat 4201 atttttgaat ttattataat tattgctatg atgacaggtg aaatatctca tttaatgtat 4261 tgttgttgct tctctatcga aaatcaatca agtatacaat tttccgattc cgtttatgct 4321 attattctcg agttattaag ttatataatt cacacataag aaaaatcatt tcacataacc 4381 atttggttca cgattccata gaacgaatgt gtttcatatt ttaattgttt tagtcgcacg 4441 gccgctatcg cctcaaaggg accgagatca agtgaacaaa atattttttg aacttttgaa 4501 aaaacgaaac ttttaaacat tctgtcgaag actaattggt tttcaatgat tttgactatt 4561 ttcggttatt gaccaactaa taactaaatc acaagtttta ccaccaaccc aataacaacc 4621 taaacccata agttattcaa cattatgaga ttcataaaaa caaatattaa taaataaata 4681 aaagaaaact gtttgaaact gcaaa