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LOCUS XM_013256939 4909 bp mRNA linear INV 02-SEP-2023 (LOC106090664), transcript variant X1, mRNA. ACCESSION XM_013256939 VERSION XM_013256939.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013256939.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4909 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4909 /gene="LOC106090664" /note="AP-3 complex subunit delta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106090664" CDS 643..3816 /gene="LOC106090664" /codon_start=1 /product="AP-3 complex subunit delta isoform X1" /protein_id="XP_013112393.1" /db_xref="GeneID:106090664" /translation="MALKKVKGNFERMFDKNLTDLVRGIRNNKDNEAKYISQCIEEIK QELRQDNINVKCNAVAKLTYIQMLGYDISWAGFNIIEVMSSSRFTCKRIGYLAASQCF HPDSELLMLTTNMIRKDLNSQNQYDAGVALSGLSCFISPDLSRDLANDIMTLMSSTKP YLRMKAVLMMYKVFLRYPEALKPAFPKLKEKLEDPDPGVQSAAVNVVCELARKNPKNY LPLAPVFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLL YECINTVIAVLISISSGMPNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTH PKSVQAHKDLILACLDDKDESIRLRALDLLYGMVSKKNLMEIVKRLLGHMERAEGSSY RDELLYKVIEICSQSSYLYVTNFEWYLTVLVELIQLEAGSKHGRLIAEQLLDVAIRVP VVRQFAVKEMTSLLDTFSISSQSNSMYEVLYAAAWIVGEFSNELEDAEHTLNILLRPR QVPGHIQSVFVQNVIKLFTRLATTCLENEDPDGLVRLCNQVLEKLQEFNSSDDIEVQE RANSACILIDMLRAQFDEANNETCNQHADFIGTDDHPIAMPRSSTIPTLAIEIVQEMA LLFAGDLIPVAPKAQRKVPLPDGLDLDEWINPPPEDDSDESSHDDKEELFVSASAQLD EGKRRPSEELTPEQIERQRMQRMIEQSNNPHYLKSSPSTPDVGSSNARSLSSNNSQHN ADQYDNIDDIPITELSLDIPLKVGATKRSDQYILQEKANSKEKKKHKKSKKSKKSKSK TTYNSTSESEDEPKPMHIVNTTLDMPEGVALSDGDDKDGKFDSDDPHRALDIELDIPD LEEPKYRNSKKDSTEHMIATEKEKKSKSSSTTSHKKEKKKDKDKENDKDKDKSSHKKK SSTKSSSLAVNNNEVNSANLLGTSLEELEAPINISNAITNTTAAIIPPLETTLEKRKK HKSHKSSTSTKELKMLQNNDNDPIDTSTKTTSKKKKDKKEKEHHHHHKDKKKSSHHQH HHHHKSSAATNDYEEALGISTPSKEIF" misc_feature 736..2373 /gene="LOC106090664" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 2719..3201 /gene="LOC106090664" /note="AP-3 complex subunit delta-1; Region: AP3D1; pfam06375" /db_xref="CDD:461889" polyA_site 4909 /gene="LOC106090664" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaacttgcat ggagtggtgg aatggccttt caccaaccag aaaaccatca aacccaacaa 61 cgtcgtcgtc gtcgcgaatc cctgggactc ttgaaccact tggaatgctc ttccgtattt 121 ggactggaat gcaccgctcc ggatttgact tgtggcgaaa ctaactaaaa aaagtgcatt 181 aattgaattt tccttcgtcg tatttttatc ttatcctctt cgacaatgta aaaatgtttg 241 ttgatgaaaa aaaaagagtt atttttctta attaattgag tgctccaata acaaaatata 301 tcaaattaat caacatttgt gtgaaaaaat attctatacg tgaaaaagaa gtgcatgtgc 361 aaccaaaggc aagagaaaaa atcaatttaa aaaatctgtc gacatcatca aatttgtttg 421 cttttttttc gttgtatagt agttgtcagt ggttctctta tggtgcaagt gaccaacagc 481 atacccattg gaagacaaag aaactataca ttacaaatca ccaaattacc gtaaaaatac 541 atattcatgt gcaaatatat aaaagaaaat tgaaagaaag ttagaaagaa aaatctcgtt 601 cgcaagttca gaagtgagat tggttcaata gaaaagtgaa aaatggctct gaaaaaagtt 661 aaaggcaatt tcgaacgtat gtttgataaa aacctcaccg atctggtacg aggcatacgt 721 aataataagg ataacgaggc taaatatatt tcccagtgca ttgaagaaat taaacaggaa 781 ctgaggcagg acaatataaa cgtaaaatgt aatgcagtgg ccaaattaac ttatatacaa 841 atgcttggct atgatatatc atgggctggc tttaatataa tcgaagtaat gagttcttcg 901 cgctttactt gcaaacgtat tggttatttg gctgccagtc aatgttttca tcccgatagc 961 gagctcctta tgttaaccac gaacatgata cgcaaagatt tgaactcaca aaatcaatat 1021 gatgctggtg tagcattaag tggtctcagt tgttttatat cccccgactt atcgagggac 1081 ttagccaatg atattatgac gttgatgagt tcaaccaaac cctatctgcg catgaaagcc 1141 gtccttatga tgtataaagt atttcttcgt tatccggaag ctttaaaacc tgcatttcct 1201 aaacttaaag agaaactgga agaccctgat ccaggcgtac aatccgctgc cgttaatgtt 1261 gtttgtgaat tagcacgtaa gaatcctaaa aattatcttc ctttagctcc cgtatttttt 1321 aaactaatga caacatcaac caataattgg atgcttatta aaattattaa attgtttggc 1381 gctttaactc ctttagaacc ccggctagga aagaaattaa tagaaccact cacaaatctt 1441 atccatagta catcggctat gagtttattg tacgaatgca tcaatacggt tatagcagtc 1501 ttgatcagca tcagtagtgg tatgcccaac catagtgcct ctatacaact ttgtgtccaa 1561 aagttgcgta tcctaattga agactcggat caaaatttga aatatttggg tctgttggcc 1621 atgtcgaaaa tcttaaaaac gcatcccaaa agtgttcaag cgcataagga tttaattttg 1681 gcttgcctag acgacaaaga tgaatcaatt agactgagag ctttggattt gctctatggc 1741 atggtatcga aaaagaatct catggaaatc gtcaaacgtc tcttgggaca tatggagaga 1801 gctgagggtt ccagttatcg tgatgaatta ctctacaaag taattgaaat ttgttcgcaa 1861 agctcatacc tttatgttac caatttcgag tggtatttaa cagtgctggt ggagttgata 1921 caattggagg cgggttcaaa acatggtcgt ttgatagcgg aacaattatt ggatgttgcg 1981 attagagtgc ctgttgtgcg tcaattcgct gttaaagaaa tgacgtctct cttggatacg 2041 ttttccattt catcgcaaag caattcgatg tatgaggttc tatatgcggc cgcctggatt 2101 gtaggtgaat tttcaaatga attggaggat gccgagcata ccctaaacat attgctgcgg 2161 cctcgtcaag tgccgggaca tatacaaagt gtttttgtac aaaatgtcat caagttgttt 2221 acgcgattgg ccacaacatg cctggaaaac gaggatcctg atggtttagt acggttatgc 2281 aatcaagtat tagagaaact acaagaattt aatagctccg atgatatcga agtacaggaa 2341 cgtgccaatt ccgcttgcat tctaatcgat atgttacgag cccaatttga cgaggccaat 2401 aacgaaacgt gcaatcaaca tgctgatttc attggcaccg acgaccatcc cattgcgatg 2461 cccagatctt caactatacc cacattggca attgaaattg ttcaagaaat ggcactactc 2521 tttgccggtg atttaatacc tgtggcaccc aaagcccaac gcaaagttcc tttacctgat 2581 ggccttgatt tggatgagtg gattaatcca cctcccgaag atgatagtga tgaatcgtcg 2641 cacgatgata aagaggaact cttcgttagt gcatcggctc agttggacga aggcaaacgg 2701 agaccaagtg aagagttgac acccgagcaa attgaacgtc aacgcatgca acgtatgatc 2761 gaacaatcga ataatccaca ctacctgaaa tcatccccat ccacgccaga tgttggctca 2821 tcaaatgcca gatcattgag tagtaataat tcgcaacata atgccgatca atacgataat 2881 atcgatgata tacccataac agagttgtca ttggatattc cattgaaagt gggagcaaca 2941 aaacgatctg atcaatatat actgcaagag aaagccaaca gtaaggagaa gaagaaacat 3001 aaaaaatcga aaaagagtaa aaaatcaaaa tcaaaaacca cttacaattc cacttccgaa 3061 tctgaagatg aacccaaacc gatgcatatt gtcaacacca cattggatat gcctgaaggt 3121 gttgcattgt ctgatggcga tgataaggat ggtaaatttg attcagatga tccccataga 3181 gcattggata ttgaattaga tatacccgat ttggaggaac ctaaatatcg aaatagtaaa 3241 aaggattcca ccgaacatat gattgcaacg gaaaaagaga aaaaatcaaa atcgtcctcg 3301 acgactagcc acaaaaagga aaaaaagaaa gacaaggata aggagaatga caaggataaa 3361 gacaagtcgt cacataagaa aaagtcatca acgaaatctt cgtcgttagc tgtaaataat 3421 aacgaagtga acagtgccaa tctgttggga acttctctgg aagaattgga agcacccatt 3481 aacatttcca atgcaatcac caacacaacc gccgcaatca ttcctccatt agaaacgacc 3541 ctggagaagc gaaagaaaca caagtcccac aaatcatcta cgtcaacaaa ggaattgaaa 3601 atgttgcaaa ataacgataa tgaccccatt gatacttcta ctaagactac ctccaaaaag 3661 aagaaggata agaaggaaaa ggagcaccat caccatcaca aggacaagaa aaagtctagc 3721 caccaccagc accaccacca ccacaagtca tctgcggcaa ccaatgacta tgaggaagcc 3781 ctgggcattt caacgcccag taaagaaatt ttttaagttg gacttttgta ttcaatattt 3841 tatgaaaagt caaagtaata tttttaattg atttatttta gtactgaaca gaaatattta 3901 tataaatata taatcaatgc atactgatga agcaagtaaa aagaaaaaaa tgccctgatt 3961 ttgaatctat ttattcgttt tatttttttc tcaaagaaaa aaattgttgg cggtttttgt 4021 tatataaaaa ataatttgtg taaacaaaaa aaaggaaaaa acaaaagaac acgtactgta 4081 aaacaattta tgaacaatta tttacaaaat caaatataca taaaaagcat acatatttag 4141 tttatagtaa aagaagagga accccctaag aagaatattt caaatgcaaa atattaatat 4201 tttatatata atcatatatt gtataaatta tatttaataa ccaataaaca ataatattcc 4261 ctacatacat acatgcgata tataaaaatt caaaatacaa ttggcataag catctctctg 4321 aacgcagaac aaccagcaac acccaatgat caatctctaa ttacgtccat aattttaaaa 4381 atacatgctt acatgcacat ttatattttt gaatttatta taattattgc tatgatgaca 4441 ggtgaaatat ctcatttaat gtattgttgt tgcttctcta tcgaaaatca atcaagtata 4501 caattttccg attccgttta tgctattatt ctcgagttat taagttatat aattcacaca 4561 taagaaaaat catttcacat aaccatttgg ttcacgattc catagaacga atgtgtttca 4621 tattttaatt gttttagtcg cacggccgct atcgcctcaa agggaccgag atcaagtgaa 4681 caaaatattt tttgaacttt tgaaaaaacg aaacttttaa acattctgtc gaagactaat 4741 tggttttcaa tgattttgac tattttcggt tattgaccaa ctaataacta aatcacaagt 4801 tttaccacca acccaataac aacctaaacc cataagttat tcaacattat gagattcata 4861 aaaacaaata ttaataaata aataaaagaa aactgtttga aactgcaaa