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LOCUS XM_013256101 3922 bp mRNA linear INV 02-SEP-2023 ATP-dependent RNA helicase PRP16 (LOC106090051), transcript variant X1, mRNA. ACCESSION XM_013256101 VERSION XM_013256101.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013256101.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3922 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3922 /gene="LOC106090051" /note="pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106090051" CDS 79..3804 /gene="LOC106090051" /codon_start=1 /product="pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1" /protein_id="XP_013111555.2" /db_xref="GeneID:106090051" /translation="MADDDESGIHRLEGTSSSEMRGGLIIKKAKSEDSTKFKIPKPSI LGLDKLAVQKRKEREEKERLISFRDNEHDDDDRSGGNRTPSTPGNVSEFAFKKPDTQS FQKVSRQLRAHKDETPSHTGGVSEEARERLREHIKRDRSKGGVHYTSKEGRDDRDRSR SSSSKDRYRDRQRDRDRDRDKSRERRREKERDREKDRDRDRDRSSRSVNTPRFRDEPK TPSGVSVSGSAWDEDEPAERSSRKSSWDFPTPKSYANSERGDWSERSSSSGFGSEYSR NRSRRDHRRDDDSARPTPSHKYNQWANDRKRSGATPSSSRSSRQPWGENEEDRDMWEE EQRRLDREWYNIDEGYDDDHNPFGSANAEYFKKREEMLEQKRTKRISAQQRQNNKDNE LWERNRMLTSGVVMSINVNDDFDEEALERVHLLVHHIIPPFLDGRIVFTKQPEPVIPV KDPTSDMALLARKGSALVRVYREQKERRKAQKKHWELGGTKLGNIMGIEKKADEEDAK YDKDTDTADYRKDQKFADHMRNQDSSSGTSDFSRKKTISEQRRFLPVFAARQELLNII RENSVIIIVGETGSGKTTQLTQYLHEDGYSNFGMIGCTQPRRVAAMSVAKRVSDEMGT KLGEEVGYAIRFEDCTSEKTVIKYMTDGILLRESLRDPDLDGYSAIIMDEAHERSLST DVLFGLLREIVARRRDLKLIVTSATMDSTKFAIFFGNVPTFTIPGRTFPVDVLFGKNA CEDYVESAVKQALQIHLTPNEGDMLIFMPGQEDIEVTCEVLAERLTEIDNAPELSILP IYSQLPSDLQAKIFQRSAEGLRKCVVATNIAETSLTVDGIIYVIDSGFCKLKVYNPRI GMDALQIYPISQANANQRSGRAGRTGPGQAFRLYTQRQYKDELLPLTVPEIQRTNLAN TVLLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTPLGRQMAEFPL DPPQCQMLIVSCQMECSAEVLIIVSMLSVPSIFYRPKGREEEADGVREKFQVPESDHL TYLNVYLQWKQNNYSSNWCNEHFIHVKAMRKVREVRQQLKDIMLQQKLTVKSCGTDWD IIRKCICSAYFYQAARLKGIGEYVNLRTGMPCHLHPTSALYGLGTTPDYVVYHELVMT AKEYMQCATAVDGYWLAELGPMFFSVKETGRSGREKKKQAAEHLKEMETQMRLAQEEM EERKLKAAQREEQLANKQEIATPGHATPRRTPSKIGL" polyA_site 3922 /gene="LOC106090051" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgttttgtg ccggtgttaa acgttcgagt ggattatttg atgataaaac tttgcaaatc 61 taaaggttcc aaagaagtat ggctgatgac gatgagtcgg gcattcatag gctggaaggc 121 accagtagca gtgaaatgcg tggaggtcta ataataaaga aagctaaaag tgaggacagc 181 accaaattca aaattccaaa accatcgatt ttgggtttgg acaaattggc ggtacaaaaa 241 cgaaaagaac gcgaagaaaa agaaaggctc atatcattca gagataatga gcatgatgac 301 gacgatagaa gtggtgggaa taggacacct tctactcccg gaaacgtcag cgagttcgct 361 tttaagaaac ctgatacgca aagttttcag aaggtcagcc gtcagctaag agcccacaaa 421 gatgagacac cttcgcatac tggaggggtc tcggaggagg cccgagagcg tctgagagaa 481 catatcaaaa gagatagaag taagggcggt gtccactaca caagcaaaga aggtcgtgat 541 gatagagatc ggagcagatc gtcttcatcg aaagataggt atcgtgatcg gcaaagagat 601 cgggatcgtg atcgagataa aagtcgggaa cgacgccgtg aaaaagaaag agatcgtgaa 661 aaggatcgcg atcgtgatcg cgaccgtagt tctcgtagtg taaatacgcc ccgttttagg 721 gatgagccta aaacgccttc aggagtatcg gtctctggta gcgcctggga tgaagatgag 781 cctgctgaac gatcgtcgcg aaaatcgtct tgggactttc ccacaccaaa gtcctacgcc 841 aattctgaaa ggggagattg gtcggaacgt agttcgagca gtggtttcgg atcggaatat 901 tctaggaacc gatcacgaag agaccataga cgagacgatg attctgcccg tccaacgcca 961 tcacataaat ataatcaatg ggctaatgac cgtaagcggt ctggagctac accctcttca 1021 agtcgtagca gccgtcaacc atggggcgaa aatgaggaag atcgtgacat gtgggaagag 1081 gaacagcgtc gactcgatcg tgagtggtac aatatcgatg agggttatga tgacgaccac 1141 aatccatttg gttctgcaaa tgccgaatat tttaagaaac gtgaagaaat gcttgaacaa 1201 aagcgcacca aacgcatcag tgcccagcaa agacaaaata ataaagataa tgaattgtgg 1261 gaacgaaatc gtatgcttac atctggcgtc gtcatgtcca tcaacgtcaa cgatgacttc 1321 gacgaggaag ctttggaacg tgtacatctt ttagttcatc acattatacc accatttttg 1381 gatgggcgta tagtgtttac caagcaacct gagcccgtaa tacccgtcaa agatcccaca 1441 tcggatatgg ccctattagc ccgaaagggt agtgctttag tgcgcgtata ccgagagcaa 1501 aaagaacgcc gcaaggcaca aaaaaaacat tgggaattgg gaggtaccaa acttggaaat 1561 attatgggta ttgagaaaaa ggcagacgaa gaagatgcga aatatgacaa agacacagat 1621 acggctgatt atcgaaaaga ccaaaaattt gctgaccata tgcgcaacca agacagctcg 1681 tcgggaacaa gtgatttctc ccgcaagaaa accatttctg agcaaaggcg tttcctgcct 1741 gtattcgcag cccgtcaaga gctcttgaac ataatacggg agaattcggt aattataata 1801 gtcggagaaa caggtagtgg taaaactacc caattaacac aatatctcca tgaggatggc 1861 tatagtaatt ttggcatgat tgggtgcaca caacctcgta gagttgctgc tatgtcagtt 1921 gctaaacgcg tttcagatga aatgggaaca aaattgggtg aggaagttgg ctatgccata 1981 cgttttgagg attgcacctc ggagaaaact gttattaaat acatgacaga tggtatattg 2041 cttcgcgaaa gtttacgaga cccagatttg gatggttatt cggcaataat tatggatgaa 2101 gcccacgaac gctcattatc gaccgatgtt ttattcggac tgttgcgcga gatcgtagcc 2161 cgtagacgtg acttaaaact gattgtaacg tcagccacca tggactcgac aaagtttgcc 2221 atcttttttg gcaatgtacc gaccttcaca atacccggac gtacatttcc tgtggatgtt 2281 ttgtttggca aaaatgcctg tgaggattat gttgaatcag ctgtgaagca agccttgcaa 2341 atccatttaa cgcccaatga gggcgacatg ttgattttca tgcccggtca agaggacatt 2401 gaggtcacct gtgaggtgtt ggcggaacgc ttgactgaaa ttgacaatgc tcccgaacta 2461 tccatactgc ccatttattc acaactgcct tcggacttgc aggcgaaaat atttcagcgt 2521 tcagccgagg gtttacgcaa atgtgtggtg gctaccaata ttgccgaaac gtctttgact 2581 gtggacggta ttatctatgt catcgattca ggattttgta aattgaaggt ctataatcct 2641 cgcattggta tggatgcttt gcaaatctat cccatatcac aagctaatgc caatcagcgc 2701 tccggtcgtg ctgggcgtac tggccccggt caagcgtttc gtttgtatac ccaacgccaa 2761 tacaaggatg aacttttgcc actaactgta cctgaaattc aacgaactaa tttggccaat 2821 acagtattgc tgttaaaatc cttaggtgtt gtcgatttgc ttcaattcca tttcatggac 2881 cccccacccc aggataacat attgaattct ctgtaccaac tttggatatt gggtgcctta 2941 gaccatacag gagctctaac gccactgggg cgacagatgg ccgaatttcc actggatcct 3001 ccgcaatgtc aaatgttaat tgtctcctgt caaatggaat gtagtgctga agtcttgata 3061 atagtctcta tgctatcggt gccatctata ttctaccgtc ccaagggccg agaagaggag 3121 gcagatggtg tacgtgaaaa gttccaagta ccggaatctg accatttgac atatctcaat 3181 gtgtatttac aatggaagca aaataattac agttccaatt ggtgcaatga acatttcatt 3241 catgtcaagg ctatgcgtaa ggtgcgggaa gttcgacaac aactcaagga tattatgctt 3301 caacaaaagc taaccgtaaa gtcatgcggc accgattggg atatcataag aaaatgtatt 3361 tgctctgctt atttctatca agcggctcgc ctaaagggta ttggcgaata tgttaacttg 3421 cgtactggca tgccatgtca cctccatcct acttcagctt tatacggtct tggtaccaca 3481 ccagattatg tagtctacca tgaattggtt atgacggcca aggaatatat gcaatgcgcc 3541 actgccgtcg atggttattg gttggctgaa ttgggtccca tgttcttttc cgttaaggag 3601 actggacgta gtggtcgcga gaagaagaaa caagctgccg aacacctcaa ggaaatggaa 3661 acgcaaatgc gtttagccca agaggaaatg gaggagcgga aactaaaagc agctcaacgg 3721 gaggagcaac ttgcaaataa acaagaaata gctactccag gacacgcaac accccggcgt 3781 actccttcca aaattggctt gtaattgaca aaagagagaa actaaattta atagtatttt 3841 gtctaaatag cgaaatatcc ttttgactaa ttttgtgcaa aaaaactaaa aaaaataaaa 3901 ataaatcggt ttttgaaggc aa