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LOCUS XM_013255576 3451 bp mRNA linear INV 02-SEP-2023 helicase 1 homolog (LOC106089653), transcript variant X1, mRNA. ACCESSION XM_013255576 VERSION XM_013255576.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013255576.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3451 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3451 /gene="LOC106089653" /note="regulator of telomere elongation helicase 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:106089653" CDS 218..3253 /gene="LOC106089653" /codon_start=1 /product="regulator of telomere elongation helicase 1 homolog" /protein_id="XP_013111030.1" /db_xref="GeneID:106089653" /translation="MPETIIAGVPVHFPFEPYEVQRAYMEKVIICLRDGTNGVLESPT GTGKTLSLLCSSLAWLQSRKEEMKNQIQRVTPSPHDLKDNPLLAEHLEMIARSKGKGG NWGLPKIIYASRTHSQLTQAMQELKRTSYSYMRAVVLGSRDQLCIHPEVMRELGNANK TQMCKLRVQTRTCSFHHRVESRKDDPEFRGPTVMDIEDLVKVGQKLKMCPYFAAKELV DDADIVFMPYNYLLDPTARKANKIELNNAICILDEAHNIEKICEESASVQIKSSDVAM AIEDTTHVMKAMSGGDMLDSAGDEPKDFTIDDLALLKEMLLELEKAFDDILVENKQEG ATFPASYIFDLLGKANISYGSSKAIVALLDKLIQFMAVESQNSMARKGGSYQKLSDLF TVVFINKEDSLQKVYRSFKVHVQIEEVKQHNSRGANQSGWLSKGNASSSSKAGKIINY WCFNPGFGMEQLLNTNVRSVILTSGTLAPLKPLIAELAIPVAQRLENPHIVSSSQVYV KIIGSGPDREQLISNYQNRDNPKYISSLGSTILNVSRLVPDGLLVFFPSYPMLNQCVN SWQASGLWSDISRHKPIYVEPRSKDDFTNTMEQFYQSIKDSKGACFMAVCRGKVSEGL DFADRNGRAVIITGLPFPPLKDPKVILKKKYLEDNRTKENELLSGQAWYSLDATRAVN QAIGRVIRHRNDYGAILLCDVRFQQSSQIQQLSKWIRDILGNQPKNTAFGPVVKELRD FFRNADKTMPKPKERCIETLVQDSCEIVEEPVRSKLFADPKEVLAAKNKFQNAHTQAI KIEKTNSIVSWSPNDYAAAAGRSNSGKLPSAMDFMSRLDSDVSAIDFNSSSSSSSGGL VKIHKRERSPTSSQMSSSSSSAFQNDLSKKKKYKLIDNTSSLVSSQLSASTTSKINAF SFGHKAQLTTCDEDNKKAPEDRMELLKVLRGLLPPSDFSAFTAGLVAYKRDDNIEALL NILFRLLAKPSSMYLLRGMKRFLKTEHRSKFDERLAFHS" misc_feature 245..2425 /gene="LOC106089653" /note="DNA repair helicase (rad3); Region: rad3; TIGR00604" /db_xref="CDD:273169" misc_feature 3005..3241 /gene="LOC106089653" /note="N-terminal protein-binding module of harmonin and similar domains, also known as HHD (harmonin homology domain); Region: harmonin_N_like; cl11968" /db_xref="CDD:448372" misc_feature order(3014..3016,3023..3025,3035..3037,3074..3076, 3083..3085,3092..3097,3104..3106) /gene="LOC106089653" /note="putative protein binding site [polypeptide binding]; other site" /db_xref="CDD:259826" polyA_site 3451 /gene="LOC106089653" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaatacatt tatttaaaaa tataaacagc ctatttgctt tttattacac aaattaaatc 61 taattatttg tatcaaagta attaacgtgt aaataccaca tcaggtgtgc atttagctga 121 cgaaatgaca aaacttcaca acaatagaaa cacgaaaagt ggaaaagttt tggcggcata 181 caatattttt cttttgctta cttgaacata gtatagaatg cctgaaacaa ttatagccgg 241 tgtgccggta cactttccat tcgaaccata tgaagttcaa agggcatata tggagaaggt 301 gattatatgc ctgcgtgatg gaacaaatgg agtattggag tcacctactg gaactggtaa 361 aacactaagt ctgctgtgct catcgctggc ctggttgcaa tcccgcaagg aggaaatgaa 421 aaaccaaatt caacgagtaa ccccttcacc ccatgactta aaggataatc ctttgttggc 481 ggaacatttg gaaatgattg ctcgttcgaa aggcaaaggt ggtaactggg gccttccaaa 541 gattatatac gcctcacgta cacattcaca gctaacgcag gccatgcaag aattaaaaag 601 aacctcttat tcttatatgc gggcagtggt tctgggatct agagaccaat tatgcataca 661 tccagaagtg atgagagaac taggaaatgc aaacaaaact caaatgtgca agctgcgtgt 721 gcaaacacga acgtgttcct ttcaccatcg cgttgaatcc cgaaaggatg acccagaatt 781 tcgtggtccc accgtcatgg atattgagga tctggtaaaa gtaggccaga aacttaaaat 841 gtgtccctac tttgctgcaa aggaactagt tgatgatgcg gatattgtat ttatgcccta 901 taattatttg ttagatccta cggctcgtaa ggcaaacaag attgaattga ataatgccat 961 ttgcattctg gatgaagctc ataatattga aaagatttgt gaggaatctg cttctgtgca 1021 aataaaatca tctgatgtgg caatggccat tgaagataca actcacgtca tgaaggctat 1081 gagcggcggg gatatgctcg attcagcagg agacgaacca aaagatttta caatagatga 1141 tttggcgttg cttaaggaaa tgttgctgga acttgaaaag gcttttgatg atatactggt 1201 tgagaataag caggagggtg ctacctttcc tgcatcatac atatttgatt tgctaggaaa 1261 agcgaatatc tcctatggtt cttcaaaggc gattgtagcg cttttggata aattaattca 1321 gtttatggct gttgaatcac agaatagtat ggcccgaaaa ggaggttctt atcaaaaatt 1381 aagcgaccta ttcacagtcg tgttcataaa caaggaagat agtttacaaa aggtatatcg 1441 cagctttaag gtacatgtgc aaattgaaga agtaaaacaa cacaacagca ggggtgctaa 1501 tcagtctggt tggctatcga agggaaatgc cagcagttca tccaaggcag ggaaaataat 1561 aaattactgg tgctttaatc cgggatttgg aatggagcaa ttgctgaata ccaatgtgcg 1621 tagtgttatt ttaacaagtg gaaccttggc cccattgaaa cccctgattg ccgagttggc 1681 cattccggta gcacagcgtc ttgaaaatcc gcatattgta tcttcttcac aggtatatgt 1741 gaaaatcata ggctctggac ccgaccgaga gcagcttata tcgaactatc aaaatagaga 1801 taatccaaag tatataagct ctttgggatc gaccatttta aatgtttccc gattagttcc 1861 cgatggtttg ctggtattct ttccctccta tcccatgctt aatcaatgcg tcaactcatg 1921 gcaagcttct ggtttatggt cggatatttc acggcataaa cctatttacg ttgaaccaag 1981 aagtaaagat gattttacca acactatgga acagttctat caaagtataa aggattcaaa 2041 aggagcttgt tttatggctg tttgtcgtgg caaagtctca gaaggtttgg attttgcgga 2101 tcgtaatggt cgcgctgtta ttataactgg attaccattc ccccccttaa aagatccaaa 2161 agttatattg aaaaagaaat atttggagga taaccgtaca aaagaaaatg agcttttatc 2221 tggccaagcc tggtattctt tagatgccac cagggctgtc aatcaggcaa ttggtcgtgt 2281 aatacgtcac cgcaatgact atggtgctat attgttgtgc gatgtgcgtt ttcaacagtc 2341 atcgcaaata caacaactat ccaaatggat aagagatatt ttgggaaatc aaccgaaaaa 2401 tacagcattt ggtccagtgg ttaaggagtt gagggatttc tttagaaacg cagacaaaac 2461 gatgccgaaa ccaaaagagc gctgcattga aactctagta caagacagtt gtgaaattgt 2521 ggaagagccc gtacgcagta aactattcgc cgaccccaaa gaagtgctgg cagctaaaaa 2581 taaatttcaa aatgcccata ctcaagccat caaaattgaa aagactaact caatagtctc 2641 ttggtctcca aacgattatg cagcggctgc tggtcggtca aatagtggca aattacccag 2701 tgctatggat tttatgagtc gcctggactc tgatgtatca gcaatagact ttaattcttc 2761 atctagcagc agtagtggag gcttggttaa aattcacaag cgtgaaagaa gtccaacttc 2821 aagtcaaatg tcctcctcat ccagcagcgc gtttcagaat gatcttagca aaaagaaaaa 2881 atataagcta attgataata cctcaagctt ggtgtcatcg caactttcgg cttctaccac 2941 ttccaaaata aatgcttttt cctttggtca taaagctcaa ctaacaacat gtgatgaaga 3001 taataagaag gctcccgaag atagaatgga acttttaaaa gtgctacgtg gtttgttgcc 3061 gccttcggat tttagtgcat tcactgccgg actggttgca tacaaacgtg atgataacat 3121 agaagctttg ttaaatatat tatttcgatt attggctaaa cccagctcaa tgtatctgtt 3181 gaggggcatg aaacgttttc tgaaaactga acaccgttca aaatttgatg aacgtcttgc 3241 attccattca tagcagcatc gttaattttc tcaactttgt gttttttgtt tttgttttta 3301 taacttgtat gtgtttgtta atatagaatc catcatccgc cagctcaatg aactttcaat 3361 gttattttat aagcttctaa tcttaagatt taggtaaacg acatatcctt acagataatg 3421 taaaataaaa gcgaaaaaat agtaaaaaca a