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LOCUS XM_013254459 2833 bp mRNA linear INV 02-SEP-2023 (LOC106088779), transcript variant X8, mRNA. ACCESSION XM_013254459 VERSION XM_013254459.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013254459.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2833 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2833 /gene="LOC106088779" /note="chondroitin sulfate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106088779" CDS 306..2795 /gene="LOC106088779" /codon_start=1 /product="chondroitin sulfate synthase 1" /protein_id="XP_013109913.2" /db_xref="GeneID:106088779" /translation="MMMSKNSMTKRKTLIFACFGIAIGLCIGTVLKNYRALEIVKRCN PKPNNQKTPFEIIGLGPDDTIQNSQKNLVFVGVMTAKNFIEGRAKAVYDTWGKEVPGR IAFFSSEGSFSDELPVVGLKNVDDRYPPQKKSFMMLYYMYENFIDKFEWFIRADDDVY IEPQKLENFLRSIDSSKPQFIGQAGKGNTEEFGLLSLEFDENFCMGGPGVILSSETLR RVAPHIPTCLKNLYSTHEDVEVGRCVQKFAGIPCTWNYEMQYILRHNSSGRAAFTGKL KRKEIHNAISLHPIKQAPLMYRLHSYIQGLKAEEMRQESLTLHRDIKRMAKYLEIPED SKYLVPGITLIPEEENSKRHIEDHNILGISPDLNKCVPKTREDLLEWSFIARGLYSIE HANPKHKIDSATREGLEDVITEVMENINNYSRQRGRVIEFRELLYGYTRLNALHGQDL ILDLLLIYKKYRGKKMTVPVRRHLYVQRAFTGIFIKEFEEDFYNTTLHRSFFKNILNQ GVEKLSNHFSLPGLLSSAKSPNGGGNSKIVFVLPIAGRLATFQRFLEVYESVALKEDK NCDLLVVIFGKGEEVNDHLELLKQLKGRNIYHQINYILRQEEFSRGVALDTAARSSYI HDDNIILFIDVDMIFKSETLQRIRMNTVQGKQVYLPIVFSQYDPRRQEQQYISPDEIT NESGYFRQFGFGICAIYKSDIMDESINGFDKDITGWGLEDVKFLEKIVKNGHHQNSFM VNTAEVSEDYNAKASQLRRLSVFRAPDPSLVHIYHDITCDVNLDVAQYNMCLGTKANS LGSTHLMENLFYDNFENVEFIKDFNRRKEMR" polyA_site 2833 /gene="LOC106088779" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cattcatcga aatttgacgt ctttcgaatt caactcttta ggcatttatt tcaattgaaa 61 aaaagaaaac tataagcgaa agaaatcgat gtacagatca gtgtcattgt tctgataatc 121 gcctataaaa atatccagtt aatcaaagtg caacaaaaac gaacaaatgc aatattcatt 181 ggatttcgga taaacctgat taaaatagaa ctcatcgttg cagcggtatc aatgagttaa 241 tccaagggag gacattgcac ttttcatcac catttatccc cagcatattc aaaattgttc 301 tcgtaatgat gatgagcaaa aattccatga ctaagcggaa aacgcttata tttgcttgtt 361 ttggcattgc cattggcctc tgcataggaa cggtcctcaa aaattatagg gccctggaaa 421 ttgtaaaacg ttgtaatcca aaaccgaaca atcagaaaac gcctttcgaa attataggcc 481 tgggtccaga tgacacgata caaaactccc aaaaaaatct tgtattcgtt ggtgtgatga 541 cggcaaaaaa cttcattgaa ggtcgagcga aagctgtcta tgatacctgg ggcaaggagg 601 tgccagggcg tattgccttt ttcagctcgg agggttcgtt ttcagacgaa ttgccagtgg 661 tcggtttgaa aaatgttgac gatcgttatc cgccacaaaa gaagtcattt atgatgctgt 721 actatatgta tgaaaacttt atagacaaat tcgaatggtt tatacgggcc gatgatgacg 781 tttacataga gccgcagaaa ttggaaaact ttctgagatc tatagacagc tctaagcccc 841 aattcatagg tcaagctggc aaaggaaata ccgaagaatt tggtttgttg tccctggagt 901 tcgatgagaa tttttgcatg ggcggcccgg gtgtcatttt aagcagtgaa actttaagaa 961 gagtcgcccc tcacatacca acttgcctaa agaatctcta cagcacccat gaagatgtcg 1021 aagtgggacg ttgtgtacag aaatttgctg gcattccttg tacgtggaac tatgagatgc 1081 aatacatttt gaggcacaat tccagtggcc gcgcagcatt tacaggaaaa ctaaagcgta 1141 aagagataca caatgccatc tcgttgcatc ccattaaaca ggctccacta atgtatcgtc 1201 tacattccta tattcagggt ttaaaagctg aagagatgcg ccaagaatca ttgacgctgc 1261 atcgtgatat caaacgcatg gctaaatatt tggaaatacc agaagatagc aaatatttgg 1321 ttccgggcat cacattaatt ccagaggaag aaaacagtaa aaggcacata gaggatcaca 1381 atatattggg tattagccca gatttgaata aatgtgtacc taaaacccga gaggatcttt 1441 tagagtggtc tttcattgca agaggtctat attccataga gcatgccaat cccaaacaca 1501 aaatcgattc tgccaccaga gaaggcctag aagatgtcat taccgaagtt atggaaaata 1561 ttaacaacta ttcgcgccag cgaggacgtg ttatagaatt tcgtgagtta ctgtatggct 1621 acaccagact taatgctcta catggccaag atttgatatt ggatttgttg ttgatataca 1681 aaaaatatcg aggcaagaaa atgacggtgc cagttagaag acatttgtat gtacagcgag 1741 cgtttactgg tatatttatc aaggagttcg aggaggactt ctacaatacc actctacaca 1801 gaagtttctt taaaaacatt ctcaatcaag gtgtggagaa attgtccaat catttttctt 1861 tgcctggact cctgtcatcg gccaaatctc caaatggcgg aggaaattca aaaattgtgt 1921 tcgtcttacc catagcggga cgtttagcca ctttccagcg tttcttggag gtatatgaaa 1981 gtgtagccct aaaagaggat aaaaattgtg atttgcttgt ggtgattttt ggcaaaggtg 2041 aagaagtaaa tgatcatctg gaattgttga agcaactgaa gggtcgcaat atataccatc 2101 aaataaacta tatacttcgc caggaggagt tctctcgagg agtggctttg gatacagctg 2161 cacgatcgtc ttatatacac gatgacaata ttatactttt catagatgtg gatatgatat 2221 tcaaatcgga aacactgcaa agaattcgca tgaacactgt acaaggaaaa caggtttatt 2281 tgcctattgt tttcagtcaa tacgatcccc ggcggcaaga acagcaatat atctcacccg 2341 atgagataac aaatgaaagt ggttacttcc gccagtttgg ctttggcata tgtgccatct 2401 ataagtcgga tatcatggac gaaagcatta atggctttga caaagacata acaggctggg 2461 gcctggaaga tgtcaagttc ctggagaaaa ttgtcaagaa tggacaccat caaaattcct 2521 ttatggttaa cacagccgaa gtttccgaag attacaatgc gaaagcttca cagctgcggc 2581 gcctctcagt attccgagcg ccagatccta gtttggtaca catttatcat gacatcacat 2641 gtgatgtcaa cctagatgtg gcccagtaca atatgtgcct tggcacaaag gcgaattcat 2701 tgggcagtac ccatttaatg gagaacttgt tctacgacaa tttcgaaaat gttgaattta 2761 ttaaagattt taaccgcaga aaagagatga gatgatgggc ttagtttatc ataactttaa 2821 gggcgggaat tta