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LOCUS XM_013254455 2868 bp mRNA linear INV 02-SEP-2023 (LOC106088779), transcript variant X4, mRNA. ACCESSION XM_013254455 VERSION XM_013254455.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013254455.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2868 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2868 /gene="LOC106088779" /note="chondroitin sulfate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106088779" CDS 341..2830 /gene="LOC106088779" /codon_start=1 /product="chondroitin sulfate synthase 1" /protein_id="XP_013109909.2" /db_xref="GeneID:106088779" /translation="MMMSKNSMTKRKTLIFACFGIAIGLCIGTVLKNYRALEIVKRCN PKPNNQKTPFEIIGLGPDDTIQNSQKNLVFVGVMTAKNFIEGRAKAVYDTWGKEVPGR IAFFSSEGSFSDELPVVGLKNVDDRYPPQKKSFMMLYYMYENFIDKFEWFIRADDDVY IEPQKLENFLRSIDSSKPQFIGQAGKGNTEEFGLLSLEFDENFCMGGPGVILSSETLR RVAPHIPTCLKNLYSTHEDVEVGRCVQKFAGIPCTWNYEMQYILRHNSSGRAAFTGKL KRKEIHNAISLHPIKQAPLMYRLHSYIQGLKAEEMRQESLTLHRDIKRMAKYLEIPED SKYLVPGITLIPEEENSKRHIEDHNILGISPDLNKCVPKTREDLLEWSFIARGLYSIE HANPKHKIDSATREGLEDVITEVMENINNYSRQRGRVIEFRELLYGYTRLNALHGQDL ILDLLLIYKKYRGKKMTVPVRRHLYVQRAFTGIFIKEFEEDFYNTTLHRSFFKNILNQ GVEKLSNHFSLPGLLSSAKSPNGGGNSKIVFVLPIAGRLATFQRFLEVYESVALKEDK NCDLLVVIFGKGEEVNDHLELLKQLKGRNIYHQINYILRQEEFSRGVALDTAARSSYI HDDNIILFIDVDMIFKSETLQRIRMNTVQGKQVYLPIVFSQYDPRRQEQQYISPDEIT NESGYFRQFGFGICAIYKSDIMDESINGFDKDITGWGLEDVKFLEKIVKNGHHQNSFM VNTAEVSEDYNAKASQLRRLSVFRAPDPSLVHIYHDITCDVNLDVAQYNMCLGTKANS LGSTHLMENLFYDNFENVEFIKDFNRRKEMR" polyA_site 2868 /gene="LOC106088779" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtctttcggt ttgttgggag tgtttttctg tttttcagtc ttcgacgtct tatgtttgca 61 gaattcaact ctttaggcat ttatttcaat tgaaaaaaag aaaactataa gcgaaagaaa 121 tcgatgtaca gatcagtgtc attgttctga taatcgccta taaaaatatc cagttaatca 181 aagtgcaaca aaaacgaaca aatgcaatat tcattggatt tcggataaac ctgattaaaa 241 tagaactcat cgttgcagcg gtatcaatga gttaatccaa gggaggacat tgcacttttc 301 atcaccattt atccccagca tattcaaaat tgttctcgta atgatgatga gcaaaaattc 361 catgactaag cggaaaacgc ttatatttgc ttgttttggc attgccattg gcctctgcat 421 aggaacggtc ctcaaaaatt atagggccct ggaaattgta aaacgttgta atccaaaacc 481 gaacaatcag aaaacgcctt tcgaaattat aggcctgggt ccagatgaca cgatacaaaa 541 ctcccaaaaa aatcttgtat tcgttggtgt gatgacggca aaaaacttca ttgaaggtcg 601 agcgaaagct gtctatgata cctggggcaa ggaggtgcca gggcgtattg cctttttcag 661 ctcggagggt tcgttttcag acgaattgcc agtggtcggt ttgaaaaatg ttgacgatcg 721 ttatccgcca caaaagaagt catttatgat gctgtactat atgtatgaaa actttataga 781 caaattcgaa tggtttatac gggccgatga tgacgtttac atagagccgc agaaattgga 841 aaactttctg agatctatag acagctctaa gccccaattc ataggtcaag ctggcaaagg 901 aaataccgaa gaatttggtt tgttgtccct ggagttcgat gagaattttt gcatgggcgg 961 cccgggtgtc attttaagca gtgaaacttt aagaagagtc gcccctcaca taccaacttg 1021 cctaaagaat ctctacagca cccatgaaga tgtcgaagtg ggacgttgtg tacagaaatt 1081 tgctggcatt ccttgtacgt ggaactatga gatgcaatac attttgaggc acaattccag 1141 tggccgcgca gcatttacag gaaaactaaa gcgtaaagag atacacaatg ccatctcgtt 1201 gcatcccatt aaacaggctc cactaatgta tcgtctacat tcctatattc agggtttaaa 1261 agctgaagag atgcgccaag aatcattgac gctgcatcgt gatatcaaac gcatggctaa 1321 atatttggaa ataccagaag atagcaaata tttggttccg ggcatcacat taattccaga 1381 ggaagaaaac agtaaaaggc acatagagga tcacaatata ttgggtatta gcccagattt 1441 gaataaatgt gtacctaaaa cccgagagga tcttttagag tggtctttca ttgcaagagg 1501 tctatattcc atagagcatg ccaatcccaa acacaaaatc gattctgcca ccagagaagg 1561 cctagaagat gtcattaccg aagttatgga aaatattaac aactattcgc gccagcgagg 1621 acgtgttata gaatttcgtg agttactgta tggctacacc agacttaatg ctctacatgg 1681 ccaagatttg atattggatt tgttgttgat atacaaaaaa tatcgaggca agaaaatgac 1741 ggtgccagtt agaagacatt tgtatgtaca gcgagcgttt actggtatat ttatcaagga 1801 gttcgaggag gacttctaca ataccactct acacagaagt ttctttaaaa acattctcaa 1861 tcaaggtgtg gagaaattgt ccaatcattt ttctttgcct ggactcctgt catcggccaa 1921 atctccaaat ggcggaggaa attcaaaaat tgtgttcgtc ttacccatag cgggacgttt 1981 agccactttc cagcgtttct tggaggtata tgaaagtgta gccctaaaag aggataaaaa 2041 ttgtgatttg cttgtggtga tttttggcaa aggtgaagaa gtaaatgatc atctggaatt 2101 gttgaagcaa ctgaagggtc gcaatatata ccatcaaata aactatatac ttcgccagga 2161 ggagttctct cgaggagtgg ctttggatac agctgcacga tcgtcttata tacacgatga 2221 caatattata cttttcatag atgtggatat gatattcaaa tcggaaacac tgcaaagaat 2281 tcgcatgaac actgtacaag gaaaacaggt ttatttgcct attgttttca gtcaatacga 2341 tccccggcgg caagaacagc aatatatctc acccgatgag ataacaaatg aaagtggtta 2401 cttccgccag tttggctttg gcatatgtgc catctataag tcggatatca tggacgaaag 2461 cattaatggc tttgacaaag acataacagg ctggggcctg gaagatgtca agttcctgga 2521 gaaaattgtc aagaatggac accatcaaaa ttcctttatg gttaacacag ccgaagtttc 2581 cgaagattac aatgcgaaag cttcacagct gcggcgcctc tcagtattcc gagcgccaga 2641 tcctagtttg gtacacattt atcatgacat cacatgtgat gtcaacctag atgtggccca 2701 gtacaatatg tgccttggca caaaggcgaa ttcattgggc agtacccatt taatggagaa 2761 cttgttctac gacaatttcg aaaatgttga atttattaaa gattttaacc gcagaaaaga 2821 gatgagatga tgggcttagt ttatcataac tttaagggcg ggaattta