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LOCUS XM_013254454 2919 bp mRNA linear INV 02-SEP-2023 (LOC106088779), transcript variant X6, mRNA. ACCESSION XM_013254454 VERSION XM_013254454.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013254454.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2919 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2919 /gene="LOC106088779" /note="chondroitin sulfate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106088779" CDS 392..2881 /gene="LOC106088779" /codon_start=1 /product="chondroitin sulfate synthase 1" /protein_id="XP_013109908.2" /db_xref="GeneID:106088779" /translation="MMMSKNSMTKRKTLIFACFGIAIGLCIGTVLKNYRALEIVKRCN PKPNNQKTPFEIIGLGPDDTIQNSQKNLVFVGVMTAKNFIEGRAKAVYDTWGKEVPGR IAFFSSEGSFSDELPVVGLKNVDDRYPPQKKSFMMLYYMYENFIDKFEWFIRADDDVY IEPQKLENFLRSIDSSKPQFIGQAGKGNTEEFGLLSLEFDENFCMGGPGVILSSETLR RVAPHIPTCLKNLYSTHEDVEVGRCVQKFAGIPCTWNYEMQYILRHNSSGRAAFTGKL KRKEIHNAISLHPIKQAPLMYRLHSYIQGLKAEEMRQESLTLHRDIKRMAKYLEIPED SKYLVPGITLIPEEENSKRHIEDHNILGISPDLNKCVPKTREDLLEWSFIARGLYSIE HANPKHKIDSATREGLEDVITEVMENINNYSRQRGRVIEFRELLYGYTRLNALHGQDL ILDLLLIYKKYRGKKMTVPVRRHLYVQRAFTGIFIKEFEEDFYNTTLHRSFFKNILNQ GVEKLSNHFSLPGLLSSAKSPNGGGNSKIVFVLPIAGRLATFQRFLEVYESVALKEDK NCDLLVVIFGKGEEVNDHLELLKQLKGRNIYHQINYILRQEEFSRGVALDTAARSSYI HDDNIILFIDVDMIFKSETLQRIRMNTVQGKQVYLPIVFSQYDPRRQEQQYISPDEIT NESGYFRQFGFGICAIYKSDIMDESINGFDKDITGWGLEDVKFLEKIVKNGHHQNSFM VNTAEVSEDYNAKASQLRRLSVFRAPDPSLVHIYHDITCDVNLDVAQYNMCLGTKANS LGSTHLMENLFYDNFENVEFIKDFNRRKEMR" polyA_site 2919 /gene="LOC106088779" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcattcatcg aaatttgacg tctttcggtt tgttgggagt gtttttctgt ttttcagtct 61 tcgacggtcg gtctctgttg tgtttttggt gtaaaaaaag cctcttaaaa ataattcaac 121 tctttaggca tttatttcaa ttgaaaaaaa gaaaactata agcgaaagaa atcgatgtac 181 agatcagtgt cattgttctg ataatcgcct ataaaaatat ccagttaatc aaagtgcaac 241 aaaaacgaac aaatgcaata ttcattggat ttcggataaa cctgattaaa atagaactca 301 tcgttgcagc ggtatcaatg agttaatcca agggaggaca ttgcactttt catcaccatt 361 tatccccagc atattcaaaa ttgttctcgt aatgatgatg agcaaaaatt ccatgactaa 421 gcggaaaacg cttatatttg cttgttttgg cattgccatt ggcctctgca taggaacggt 481 cctcaaaaat tatagggccc tggaaattgt aaaacgttgt aatccaaaac cgaacaatca 541 gaaaacgcct ttcgaaatta taggcctggg tccagatgac acgatacaaa actcccaaaa 601 aaatcttgta ttcgttggtg tgatgacggc aaaaaacttc attgaaggtc gagcgaaagc 661 tgtctatgat acctggggca aggaggtgcc agggcgtatt gcctttttca gctcggaggg 721 ttcgttttca gacgaattgc cagtggtcgg tttgaaaaat gttgacgatc gttatccgcc 781 acaaaagaag tcatttatga tgctgtacta tatgtatgaa aactttatag acaaattcga 841 atggtttata cgggccgatg atgacgttta catagagccg cagaaattgg aaaactttct 901 gagatctata gacagctcta agccccaatt cataggtcaa gctggcaaag gaaataccga 961 agaatttggt ttgttgtccc tggagttcga tgagaatttt tgcatgggcg gcccgggtgt 1021 cattttaagc agtgaaactt taagaagagt cgcccctcac ataccaactt gcctaaagaa 1081 tctctacagc acccatgaag atgtcgaagt gggacgttgt gtacagaaat ttgctggcat 1141 tccttgtacg tggaactatg agatgcaata cattttgagg cacaattcca gtggccgcgc 1201 agcatttaca ggaaaactaa agcgtaaaga gatacacaat gccatctcgt tgcatcccat 1261 taaacaggct ccactaatgt atcgtctaca ttcctatatt cagggtttaa aagctgaaga 1321 gatgcgccaa gaatcattga cgctgcatcg tgatatcaaa cgcatggcta aatatttgga 1381 aataccagaa gatagcaaat atttggttcc gggcatcaca ttaattccag aggaagaaaa 1441 cagtaaaagg cacatagagg atcacaatat attgggtatt agcccagatt tgaataaatg 1501 tgtacctaaa acccgagagg atcttttaga gtggtctttc attgcaagag gtctatattc 1561 catagagcat gccaatccca aacacaaaat cgattctgcc accagagaag gcctagaaga 1621 tgtcattacc gaagttatgg aaaatattaa caactattcg cgccagcgag gacgtgttat 1681 agaatttcgt gagttactgt atggctacac cagacttaat gctctacatg gccaagattt 1741 gatattggat ttgttgttga tatacaaaaa atatcgaggc aagaaaatga cggtgccagt 1801 tagaagacat ttgtatgtac agcgagcgtt tactggtata tttatcaagg agttcgagga 1861 ggacttctac aataccactc tacacagaag tttctttaaa aacattctca atcaaggtgt 1921 ggagaaattg tccaatcatt tttctttgcc tggactcctg tcatcggcca aatctccaaa 1981 tggcggagga aattcaaaaa ttgtgttcgt cttacccata gcgggacgtt tagccacttt 2041 ccagcgtttc ttggaggtat atgaaagtgt agccctaaaa gaggataaaa attgtgattt 2101 gcttgtggtg atttttggca aaggtgaaga agtaaatgat catctggaat tgttgaagca 2161 actgaagggt cgcaatatat accatcaaat aaactatata cttcgccagg aggagttctc 2221 tcgaggagtg gctttggata cagctgcacg atcgtcttat atacacgatg acaatattat 2281 acttttcata gatgtggata tgatattcaa atcggaaaca ctgcaaagaa ttcgcatgaa 2341 cactgtacaa ggaaaacagg tttatttgcc tattgttttc agtcaatacg atccccggcg 2401 gcaagaacag caatatatct cacccgatga gataacaaat gaaagtggtt acttccgcca 2461 gtttggcttt ggcatatgtg ccatctataa gtcggatatc atggacgaaa gcattaatgg 2521 ctttgacaaa gacataacag gctggggcct ggaagatgtc aagttcctgg agaaaattgt 2581 caagaatgga caccatcaaa attcctttat ggttaacaca gccgaagttt ccgaagatta 2641 caatgcgaaa gcttcacagc tgcggcgcct ctcagtattc cgagcgccag atcctagttt 2701 ggtacacatt tatcatgaca tcacatgtga tgtcaaccta gatgtggccc agtacaatat 2761 gtgccttggc acaaaggcga attcattggg cagtacccat ttaatggaga acttgttcta 2821 cgacaatttc gaaaatgttg aatttattaa agattttaac cgcagaaaag agatgagatg 2881 atgggcttag tttatcataa ctttaagggc gggaattta