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LOCUS XM_013254453 2933 bp mRNA linear INV 02-SEP-2023 (LOC106088779), transcript variant X2, mRNA. ACCESSION XM_013254453 VERSION XM_013254453.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013254453.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2933 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2933 /gene="LOC106088779" /note="chondroitin sulfate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106088779" CDS 406..2895 /gene="LOC106088779" /codon_start=1 /product="chondroitin sulfate synthase 1" /protein_id="XP_013109907.2" /db_xref="GeneID:106088779" /translation="MMMSKNSMTKRKTLIFACFGIAIGLCIGTVLKNYRALEIVKRCN PKPNNQKTPFEIIGLGPDDTIQNSQKNLVFVGVMTAKNFIEGRAKAVYDTWGKEVPGR IAFFSSEGSFSDELPVVGLKNVDDRYPPQKKSFMMLYYMYENFIDKFEWFIRADDDVY IEPQKLENFLRSIDSSKPQFIGQAGKGNTEEFGLLSLEFDENFCMGGPGVILSSETLR RVAPHIPTCLKNLYSTHEDVEVGRCVQKFAGIPCTWNYEMQYILRHNSSGRAAFTGKL KRKEIHNAISLHPIKQAPLMYRLHSYIQGLKAEEMRQESLTLHRDIKRMAKYLEIPED SKYLVPGITLIPEEENSKRHIEDHNILGISPDLNKCVPKTREDLLEWSFIARGLYSIE HANPKHKIDSATREGLEDVITEVMENINNYSRQRGRVIEFRELLYGYTRLNALHGQDL ILDLLLIYKKYRGKKMTVPVRRHLYVQRAFTGIFIKEFEEDFYNTTLHRSFFKNILNQ GVEKLSNHFSLPGLLSSAKSPNGGGNSKIVFVLPIAGRLATFQRFLEVYESVALKEDK NCDLLVVIFGKGEEVNDHLELLKQLKGRNIYHQINYILRQEEFSRGVALDTAARSSYI HDDNIILFIDVDMIFKSETLQRIRMNTVQGKQVYLPIVFSQYDPRRQEQQYISPDEIT NESGYFRQFGFGICAIYKSDIMDESINGFDKDITGWGLEDVKFLEKIVKNGHHQNSFM VNTAEVSEDYNAKASQLRRLSVFRAPDPSLVHIYHDITCDVNLDVAQYNMCLGTKANS LGSTHLMENLFYDNFENVEFIKDFNRRKEMR" polyA_site 2933 /gene="LOC106088779" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcattcatcg aaatttgacg tctttcggtt tgttgggagt gtttttctgt ttttcagtct 61 tcgacggtcg gtctctgttg tgtttttggt gtaaaaaaag cctcttaaaa attcttatgt 121 ttgcagaatt caactcttta ggcatttatt tcaattgaaa aaaagaaaac tataagcgaa 181 agaaatcgat gtacagatca gtgtcattgt tctgataatc gcctataaaa atatccagtt 241 aatcaaagtg caacaaaaac gaacaaatgc aatattcatt ggatttcgga taaacctgat 301 taaaatagaa ctcatcgttg cagcggtatc aatgagttaa tccaagggag gacattgcac 361 ttttcatcac catttatccc cagcatattc aaaattgttc tcgtaatgat gatgagcaaa 421 aattccatga ctaagcggaa aacgcttata tttgcttgtt ttggcattgc cattggcctc 481 tgcataggaa cggtcctcaa aaattatagg gccctggaaa ttgtaaaacg ttgtaatcca 541 aaaccgaaca atcagaaaac gcctttcgaa attataggcc tgggtccaga tgacacgata 601 caaaactccc aaaaaaatct tgtattcgtt ggtgtgatga cggcaaaaaa cttcattgaa 661 ggtcgagcga aagctgtcta tgatacctgg ggcaaggagg tgccagggcg tattgccttt 721 ttcagctcgg agggttcgtt ttcagacgaa ttgccagtgg tcggtttgaa aaatgttgac 781 gatcgttatc cgccacaaaa gaagtcattt atgatgctgt actatatgta tgaaaacttt 841 atagacaaat tcgaatggtt tatacgggcc gatgatgacg tttacataga gccgcagaaa 901 ttggaaaact ttctgagatc tatagacagc tctaagcccc aattcatagg tcaagctggc 961 aaaggaaata ccgaagaatt tggtttgttg tccctggagt tcgatgagaa tttttgcatg 1021 ggcggcccgg gtgtcatttt aagcagtgaa actttaagaa gagtcgcccc tcacatacca 1081 acttgcctaa agaatctcta cagcacccat gaagatgtcg aagtgggacg ttgtgtacag 1141 aaatttgctg gcattccttg tacgtggaac tatgagatgc aatacatttt gaggcacaat 1201 tccagtggcc gcgcagcatt tacaggaaaa ctaaagcgta aagagataca caatgccatc 1261 tcgttgcatc ccattaaaca ggctccacta atgtatcgtc tacattccta tattcagggt 1321 ttaaaagctg aagagatgcg ccaagaatca ttgacgctgc atcgtgatat caaacgcatg 1381 gctaaatatt tggaaatacc agaagatagc aaatatttgg ttccgggcat cacattaatt 1441 ccagaggaag aaaacagtaa aaggcacata gaggatcaca atatattggg tattagccca 1501 gatttgaata aatgtgtacc taaaacccga gaggatcttt tagagtggtc tttcattgca 1561 agaggtctat attccataga gcatgccaat cccaaacaca aaatcgattc tgccaccaga 1621 gaaggcctag aagatgtcat taccgaagtt atggaaaata ttaacaacta ttcgcgccag 1681 cgaggacgtg ttatagaatt tcgtgagtta ctgtatggct acaccagact taatgctcta 1741 catggccaag atttgatatt ggatttgttg ttgatataca aaaaatatcg aggcaagaaa 1801 atgacggtgc cagttagaag acatttgtat gtacagcgag cgtttactgg tatatttatc 1861 aaggagttcg aggaggactt ctacaatacc actctacaca gaagtttctt taaaaacatt 1921 ctcaatcaag gtgtggagaa attgtccaat catttttctt tgcctggact cctgtcatcg 1981 gccaaatctc caaatggcgg aggaaattca aaaattgtgt tcgtcttacc catagcggga 2041 cgtttagcca ctttccagcg tttcttggag gtatatgaaa gtgtagccct aaaagaggat 2101 aaaaattgtg atttgcttgt ggtgattttt ggcaaaggtg aagaagtaaa tgatcatctg 2161 gaattgttga agcaactgaa gggtcgcaat atataccatc aaataaacta tatacttcgc 2221 caggaggagt tctctcgagg agtggctttg gatacagctg cacgatcgtc ttatatacac 2281 gatgacaata ttatactttt catagatgtg gatatgatat tcaaatcgga aacactgcaa 2341 agaattcgca tgaacactgt acaaggaaaa caggtttatt tgcctattgt tttcagtcaa 2401 tacgatcccc ggcggcaaga acagcaatat atctcacccg atgagataac aaatgaaagt 2461 ggttacttcc gccagtttgg ctttggcata tgtgccatct ataagtcgga tatcatggac 2521 gaaagcatta atggctttga caaagacata acaggctggg gcctggaaga tgtcaagttc 2581 ctggagaaaa ttgtcaagaa tggacaccat caaaattcct ttatggttaa cacagccgaa 2641 gtttccgaag attacaatgc gaaagcttca cagctgcggc gcctctcagt attccgagcg 2701 ccagatccta gtttggtaca catttatcat gacatcacat gtgatgtcaa cctagatgtg 2761 gcccagtaca atatgtgcct tggcacaaag gcgaattcat tgggcagtac ccatttaatg 2821 gagaacttgt tctacgacaa tttcgaaaat gttgaattta ttaaagattt taaccgcaga 2881 aaagagatga gatgatgggc ttagtttatc ataactttaa gggcgggaat tta