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LOCUS XM_013254452 2985 bp mRNA linear INV 02-SEP-2023 (LOC106088779), transcript variant X1, mRNA. ACCESSION XM_013254452 VERSION XM_013254452.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013254452.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2985 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2985 /gene="LOC106088779" /note="chondroitin sulfate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106088779" CDS 458..2947 /gene="LOC106088779" /codon_start=1 /product="chondroitin sulfate synthase 1" /protein_id="XP_013109906.2" /db_xref="GeneID:106088779" /translation="MMMSKNSMTKRKTLIFACFGIAIGLCIGTVLKNYRALEIVKRCN PKPNNQKTPFEIIGLGPDDTIQNSQKNLVFVGVMTAKNFIEGRAKAVYDTWGKEVPGR IAFFSSEGSFSDELPVVGLKNVDDRYPPQKKSFMMLYYMYENFIDKFEWFIRADDDVY IEPQKLENFLRSIDSSKPQFIGQAGKGNTEEFGLLSLEFDENFCMGGPGVILSSETLR RVAPHIPTCLKNLYSTHEDVEVGRCVQKFAGIPCTWNYEMQYILRHNSSGRAAFTGKL KRKEIHNAISLHPIKQAPLMYRLHSYIQGLKAEEMRQESLTLHRDIKRMAKYLEIPED SKYLVPGITLIPEEENSKRHIEDHNILGISPDLNKCVPKTREDLLEWSFIARGLYSIE HANPKHKIDSATREGLEDVITEVMENINNYSRQRGRVIEFRELLYGYTRLNALHGQDL ILDLLLIYKKYRGKKMTVPVRRHLYVQRAFTGIFIKEFEEDFYNTTLHRSFFKNILNQ GVEKLSNHFSLPGLLSSAKSPNGGGNSKIVFVLPIAGRLATFQRFLEVYESVALKEDK NCDLLVVIFGKGEEVNDHLELLKQLKGRNIYHQINYILRQEEFSRGVALDTAARSSYI HDDNIILFIDVDMIFKSETLQRIRMNTVQGKQVYLPIVFSQYDPRRQEQQYISPDEIT NESGYFRQFGFGICAIYKSDIMDESINGFDKDITGWGLEDVKFLEKIVKNGHHQNSFM VNTAEVSEDYNAKASQLRRLSVFRAPDPSLVHIYHDITCDVNLDVAQYNMCLGTKANS LGSTHLMENLFYDNFENVEFIKDFNRRKEMR" polyA_site 2985 /gene="LOC106088779" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcattcatcg aaatttgacg tctttcggtt tgttgggagt gtttttctgt ttttcagtct 61 tcgacggtcg gtctctgttg tgtttttggt gtaaaaaaag cctcttaaaa atacaaatcc 121 ggatggcgtg tgatcgtgtg atgttaatcg ttaactttca ttagtcttat gtttgcagaa 181 ttcaactctt taggcattta tttcaattga aaaaaagaaa actataagcg aaagaaatcg 241 atgtacagat cagtgtcatt gttctgataa tcgcctataa aaatatccag ttaatcaaag 301 tgcaacaaaa acgaacaaat gcaatattca ttggatttcg gataaacctg attaaaatag 361 aactcatcgt tgcagcggta tcaatgagtt aatccaaggg aggacattgc acttttcatc 421 accatttatc cccagcatat tcaaaattgt tctcgtaatg atgatgagca aaaattccat 481 gactaagcgg aaaacgctta tatttgcttg ttttggcatt gccattggcc tctgcatagg 541 aacggtcctc aaaaattata gggccctgga aattgtaaaa cgttgtaatc caaaaccgaa 601 caatcagaaa acgcctttcg aaattatagg cctgggtcca gatgacacga tacaaaactc 661 ccaaaaaaat cttgtattcg ttggtgtgat gacggcaaaa aacttcattg aaggtcgagc 721 gaaagctgtc tatgatacct ggggcaagga ggtgccaggg cgtattgcct ttttcagctc 781 ggagggttcg ttttcagacg aattgccagt ggtcggtttg aaaaatgttg acgatcgtta 841 tccgccacaa aagaagtcat ttatgatgct gtactatatg tatgaaaact ttatagacaa 901 attcgaatgg tttatacggg ccgatgatga cgtttacata gagccgcaga aattggaaaa 961 ctttctgaga tctatagaca gctctaagcc ccaattcata ggtcaagctg gcaaaggaaa 1021 taccgaagaa tttggtttgt tgtccctgga gttcgatgag aatttttgca tgggcggccc 1081 gggtgtcatt ttaagcagtg aaactttaag aagagtcgcc cctcacatac caacttgcct 1141 aaagaatctc tacagcaccc atgaagatgt cgaagtggga cgttgtgtac agaaatttgc 1201 tggcattcct tgtacgtgga actatgagat gcaatacatt ttgaggcaca attccagtgg 1261 ccgcgcagca tttacaggaa aactaaagcg taaagagata cacaatgcca tctcgttgca 1321 tcccattaaa caggctccac taatgtatcg tctacattcc tatattcagg gtttaaaagc 1381 tgaagagatg cgccaagaat cattgacgct gcatcgtgat atcaaacgca tggctaaata 1441 tttggaaata ccagaagata gcaaatattt ggttccgggc atcacattaa ttccagagga 1501 agaaaacagt aaaaggcaca tagaggatca caatatattg ggtattagcc cagatttgaa 1561 taaatgtgta cctaaaaccc gagaggatct tttagagtgg tctttcattg caagaggtct 1621 atattccata gagcatgcca atcccaaaca caaaatcgat tctgccacca gagaaggcct 1681 agaagatgtc attaccgaag ttatggaaaa tattaacaac tattcgcgcc agcgaggacg 1741 tgttatagaa tttcgtgagt tactgtatgg ctacaccaga cttaatgctc tacatggcca 1801 agatttgata ttggatttgt tgttgatata caaaaaatat cgaggcaaga aaatgacggt 1861 gccagttaga agacatttgt atgtacagcg agcgtttact ggtatattta tcaaggagtt 1921 cgaggaggac ttctacaata ccactctaca cagaagtttc tttaaaaaca ttctcaatca 1981 aggtgtggag aaattgtcca atcatttttc tttgcctgga ctcctgtcat cggccaaatc 2041 tccaaatggc ggaggaaatt caaaaattgt gttcgtctta cccatagcgg gacgtttagc 2101 cactttccag cgtttcttgg aggtatatga aagtgtagcc ctaaaagagg ataaaaattg 2161 tgatttgctt gtggtgattt ttggcaaagg tgaagaagta aatgatcatc tggaattgtt 2221 gaagcaactg aagggtcgca atatatacca tcaaataaac tatatacttc gccaggagga 2281 gttctctcga ggagtggctt tggatacagc tgcacgatcg tcttatatac acgatgacaa 2341 tattatactt ttcatagatg tggatatgat attcaaatcg gaaacactgc aaagaattcg 2401 catgaacact gtacaaggaa aacaggttta tttgcctatt gttttcagtc aatacgatcc 2461 ccggcggcaa gaacagcaat atatctcacc cgatgagata acaaatgaaa gtggttactt 2521 ccgccagttt ggctttggca tatgtgccat ctataagtcg gatatcatgg acgaaagcat 2581 taatggcttt gacaaagaca taacaggctg gggcctggaa gatgtcaagt tcctggagaa 2641 aattgtcaag aatggacacc atcaaaattc ctttatggtt aacacagccg aagtttccga 2701 agattacaat gcgaaagctt cacagctgcg gcgcctctca gtattccgag cgccagatcc 2761 tagtttggta cacatttatc atgacatcac atgtgatgtc aacctagatg tggcccagta 2821 caatatgtgc cttggcacaa aggcgaattc attgggcagt acccatttaa tggagaactt 2881 gttctacgac aatttcgaaa atgttgaatt tattaaagat tttaaccgca gaaaagagat 2941 gagatgatgg gcttagttta tcataacttt aagggcggga attta