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LOCUS XM_013253310 7647 bp mRNA linear INV 02-SEP-2023 (LOC106088027), transcript variant X2, mRNA. ACCESSION XM_013253310 VERSION XM_013253310.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013253310.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7647 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7647 /gene="LOC106088027" /note="E3 ubiquitin-protein ligase Ubr3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106088027" CDS 558..7547 /gene="LOC106088027" /codon_start=1 /product="E3 ubiquitin-protein ligase Ubr3" /protein_id="XP_013108764.2" /db_xref="GeneID:106088027" /translation="MDEDENNPGNGNRNREHVAGTSTSSTSASISSASASLSSASNTS NQPRPVSPAVEATSDLDFDDDDDLLDTIEVTVTTDGAPMPRDDTDDMELINLSSPASV VNSLVTSLAAVANASAQLAANTNRPPQRSPEAHERVINVGGNLITWNFENNLNAATQN MPAGAAANPGIGSVAPWDARLATAAAQATASRSPNLSGGNVVPYNYQNRMDTVASGAA ASRSPNATVGDLIAWDYNSMSGHDDGDEPSTSDRANDPSSADTGADDFGLGAAAEGAS SAGGAVPSFFFDTSSFRSRTRKEVAALINAECCRGGPTPDLDYIMDRFFNPSTPIDNA DNISWIRWLIAGGRTIREFVKIVRSYDNHAKCGLVWVPHVVAYRCRTCGISPCMSICR DCFKKGDHTNHDFNMFLSQAGGACDCGDTSVMKAEGFCSDHGINNRQNKEPVPANLLA VAEAIMPKLLFRLLQHFREHSDAASATFNMAAHLCEEFTNMLIDLNNMGEIMRKVMTR ALISKEIYKQFNDLNCLSSRHARVLKKNREKYEDAVNRFPRPEPPDDYKHLAALGEKL IHTTLLEEFIFWTFKFEFPQNLVCFLLNMLPDQDYKEHLTRTFVMHYSRIPSVLEMSR DPDTLSNRVVHMSVQLFSNESLALKMVKELSLLHVMIISLKLMMSKILIQNTLHDPSK NFHFVIDCTRQVMKDHCYWPLVSDFNNVLSHESVALVFLRDDNLIDMWFQFLSMLQGM NVNVRETASHVEFEPNSYYAAFSCELEASAYPMWSIISHLQDGKHADLAKKIITYCVN MLHEWLDAIYFPEPKISQEEMLQASFHFPLHRYLAAFVCQAVTKMGMSLSEVLPTRSY ILPLLMMHPLRVQSFFYEILAGIWVRNGLQIKGQAMTYIQANFCNSMADMDLFFLQIC ATNLPQYFFLQNTIDLFGVAQWLETAPLKQSQKMEQTSMLEGFLTFLATLVTSRTNLG NDEATQCIIEISALLATENKTHSQLLELMPERSGNVHTKNFETFLKQLSVYKAPSAGS ENLEQGLFTPIDEVWEEYYDPLHVLLRAVHRRDFQSSLDRFTNYVKSKNRMPASGNLW PPFRLPRPVGAAFSDPCRILNSRVFHSTILSILYRAVHSRDVSEHLLALAIFLLEIAI ETSEDTKSGGGSDKAAVVECEEQHKPCYPFGMRRDPPKLFRCYPTDNLSCNLRHVVTK ISLKSQEPQVTPAHYRSNPFYTDVDYELDDNQSMDISPAWGYERNLSVVHSNSAPNST TTSTALVPMRLQNMEVALPADLSVVPETGLVIRQDSQEDDSLREIGNAIENTDGSTSP AMEYRFSLQPITMSAENTGMEVVLRDGQAPGPSNTIAGVNQQVATQNQRQNQPDMFPP TTPNTIGSLIPFPRVQPVAVPSTNMDIIPSNPGALGVGRTRLAYEVSNRKRSVENAID GHSKDDVVIDESILSLLLKLHSQLSGTLDSFSVADDGDQEDESLSSSTAMDVDSESSA EPSTSSAAAAAASSQTKKRNIKVSDSRVGDGPFFIGNLLRKIAKHDELCAQNIDEIRR RLWPNQREKQAEAKAREAKEKEERRKRARERQMKMMQEFANKQKEFMQTAAATNMDAG MEEEEELYEEQPREKEYDCIICNCTTPSTEANPIGLVVLVESSGIVGHRRRITERLPL PLSPEDEERLKHSTRLATEFNRRTELLSLKFGEESWYLSNNMAYENGVHVQSCGHHVH LSCLDAYLKTLYASQRQHQHERGEFYCPVCRQLSNSVLPLSPQLDRPTPVVRSGTQPF EQLVSELTNLIKENERPPISTKLSEAMGRAMEDMTNITHRKMKRIPPTFRSLFIFVTS IARTNLESEIIQRGGTLCSTNPTRYKAKRDCIVPLLHVLSVHVRVLVEWPLWSSWASL AGMPVTDIAPVPSHCREVIPAILADPIALLLKFILLAPLHLDQEYFSCMVKVMYNLLY YQIVVQLCVTLTDLECDYILANFNAPPSAESQPSSSRRNSMRSSPNAYLARAMALVLK NTNRLSHLRRDSIPSTSAAASAMNSATANAASPSVSSSNSNSNIDVDSPTTSPLAGVE VNFKSMEMQLQTLCLPFLRIAALLRQHLYRHEMPEISAPGLEFVRLVYYLELVTDSMD WDCFNASKGLCFIPGGSEDTLPKFWCEQLMNIRPPTDTVRELVILNQHASWQQPKLLQ LPREYERLFTYYHERPCLNCYKVPKESSICLLCGTIVCLKQNCCAENECCEAVRHTIT CGGGIGIFLVVTSTYIIVIRGRRACLWGSLYLDDFDEEDRDLKRGKPLYLSQDRFNLL ESQWLSHKFAHTKHTWVFHRDLL" polyA_site 7647 /gene="LOC106088027" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttacaaaac gtcgagaagg aagtgcgtag ccagtggcct tttcgtgtgg tgttcatccc 61 gaggaaattg tagttatcat cgttttcaat tctttctaaa gacgagttta acttaacata 121 attctagctt ggcccatata cctcatccag ttcgcagttt tcgttgttcg ttttctataa 181 cgaacacgcc ttaaattctt gatcgatctc tcgtttaatc cgaaacaatt tcgcaaagtt 241 gtgtcttccc caaaatgttt agaatgttcc gattaatttt tgtgtgttta ttttattaga 301 aatcctagaa aaaaaatacc ttagtgaaac ttgttcttca ttacattaca acaacaataa 361 acacgtttac gttgcccgtc accttcgtca agaaaaacaa caacgacagc agcaacgacg 421 acgacgtagc agcaaacggc aaacattttg gttgatatcg tcacgaccaa caacaacaaa 481 acattttttt tttttaggaa aaacaaattg aaaataagca aaatttaaaa cttaattctt 541 tatacgacgc ctagaaaatg gatgaggatg aaaataatcc aggcaatggt aataggaatc 601 gagaacatgt ggctggtacc tccacctctt ctacctctgc ctccatctcc tcagcatctg 661 cctcattgtc ctcagcaagc aataccagca atcagcctag accagtttcg cctgctgtcg 721 aagccacttc ggatttggat ttcgatgatg atgacgattt gctagacaca attgaggtga 781 ccgttactac tgacggcgct ccaatgcctc gcgatgatac ggatgacatg gagctcataa 841 atttatcctc ccccgcctcg gtagtgaata gtctggtaac ttcattggcg gcggtggcta 901 atgcttcggc ccagttagcc gccaacacca acaggccacc ccaacgatcc cccgaagccc 961 atgaacgtgt gataaatgtg ggtggaaatc tgattacatg gaatttcgaa aataatctta 1021 atgcagccac acaaaatatg cctgcaggtg ctgcagcaaa tccgggtatc ggatctgttg 1081 cgccctggga tgcccgatta gccactgcag ctgcccaagc aacggcctca agatcaccca 1141 atttgagcgg tggtaacgtt gtgccttata actaccaaaa tagaatggat acagttgcca 1201 gtggggcagc tgcctcacgc tctccaaatg ccacagtggg agatcttatt gcctgggact 1261 acaattctat gtcagggcac gatgatggcg atgagccttc cacttcagat agagccaatg 1321 atccaagttc cgccgacacc ggtgccgatg attttggcct gggtgctgcc gcagaggggg 1381 cttcgtcggc tggtggtgca gttccaagtt tcttctttga cacttcgtcg tttcgctcgc 1441 gtacccgcaa agaagttgcg gcacttatta atgccgagtg ttgtcgcggt ggacccactc 1501 ccgatttgga ctatatcatg gatagatttt tcaatccgag tacacccata gataatgctg 1561 ataatatctc ttggatacgc tggctaattg ctggaggccg aaccataaga gaatttgtta 1621 aaatcgttcg cagctatgat aaccatgcaa aatgtggcct tgtttgggtc cctcatgttg 1681 tcgcctatcg ttgtcgcacc tgtggcatat caccctgcat gtccatatgc cgagactgtt 1741 tcaagaaggg tgatcacacg aaccacgact tcaatatgtt tctctcgcag gcaggtggtg 1801 cctgcgactg tggtgacaca tccgtaatga aagccgaagg tttctgcagt gatcatggca 1861 ttaacaatcg ccaaaataaa gaacccgtac ccgccaatct cttggccgta gctgaagcca 1921 taatgcccaa attgctgttt cggctattgc agcattttcg tgagcacagc gatgcagcat 1981 cagccacatt caatatggca gcccacttgt gcgaggagtt caccaatatg ttgatagact 2041 tgaacaacat gggtgaaata atgcgtaaag tcatgaccag ggccttaata agcaaagaaa 2101 tctacaagca gtttaacgat ctgaactgtc ttagttcaag gcacgcacgg gttttgaaga 2161 agaatcgcga aaaatacgag gatgcggtca atcgatttcc tcgacccgaa ccgccagacg 2221 attataaaca cttggcagcg ctgggcgaga aactcataca caccactttg ctggaggaat 2281 ttattttttg gacatttaag tttgagtttc cccaaaattt ggtatgcttc ctgctcaata 2341 tgctgcccga tcaggactac aaggaacatc tgactcgcac attcgttatg cactacagcc 2401 gcataccctc agtgctggaa atgtcacgtg atcccgacac cttgagcaat cgtgtagtgc 2461 atatgagtgt gcaattgttt tccaatgaga gtttagcctt gaaaatggtc aaagaattat 2521 ctctgctcca tgttatgatc attagtttga agttgatgat gtccaaaatt ctcatacaaa 2581 atactttaca tgatccttcc aaaaatttcc atttcgttat cgattgcacc cgccaagtca 2641 tgaaagatca ttgctattgg cctctggtgt cggatttcaa caatgttctc tcacacgaat 2701 cggtggcttt ggtgtttcta cgtgatgaca atttgattga tatgtggttt cagtttctct 2761 ccatgctgca aggcatgaat gtcaatgtgc gcgaaacagc ctcacatgtg gaatttgagc 2821 ctaactccta ttatgcggct ttctcttgtg aactggaagc cagtgcctat cccatgtggt 2881 cgataatatc gcacttgcaa gatggcaaac atgccgattt ggccaaaaag ataataacat 2941 attgtgttaa tatgttgcat gaatggttgg atgccattta ttttccggaa ccaaaaatat 3001 ctcaagagga aatgctacag gcgtcatttc attttcccct acatcgctat ttagccgcat 3061 tcgtctgtca agctgtcaca aaaatgggca tgtccttgtc ggaagttcta cccacaagat 3121 catatatatt accattgctt atgatgcatc cgttaagagt gcagagtttc ttctatgaga 3181 ttttggccgg aatttgggta cgcaatggcc tgcaaatcaa agggcaagcc atgacctata 3241 tacaagcgaa cttttgtaat tccatggccg atatggatct attctttttg caaatctgtg 3301 ccacaaatct gccacaatac ttcttccttc agaacaccat agatctcttt ggtgttgccc 3361 aatggctgga aacggcacca ctcaagcaat cgcagaaaat ggaacaaacc tcaatgttag 3421 agggattttt aacattccta gcgacattgg tcacaagtcg tacgaatcta ggtaatgatg 3481 aggccacgca atgtattata gaaatcagtg ctctgctggc cacggagaac aagacgcatt 3541 cacagttatt ggagttaatg cccgagcgtt cgggaaatgt gcataccaag aattttgaaa 3601 ctttcttgaa acagttatct gtgtataagg cgccatcggc tggttcggaa aaccttgaac 3661 aaggcctgtt tacaccaatc gatgaggtgt gggaggagta ctacgatcca ttgcacgttc 3721 tactgcgagc agttcaccgg cgtgatttcc aatcttccct ggatcgtttt acaaactatg 3781 tcaagtcgaa gaatcgtatg cccgccagtg gtaatttatg gcctccattt cgtttacctc 3841 gccccgttgg agctgccttc agtgatccct gtcgcattct aaattctcgt gtcttccact 3901 ccacaatatt gtcgatattg tatcgtgctg tacattctcg cgatgtatca gaacatctat 3961 tggccttagc aatcttccta ttggaaattg ccattgaaac aagcgaagat accaagtctg 4021 gtggaggtag cgacaaggcg gccgttgtag aatgtgagga gcaacataag ccctgttacc 4081 cattcggtat gcgtcgagat cctcccaaat tattcagatg ctatccgacc gataacctga 4141 gctgcaattt gagacacgtc gtgacgaaaa tatctcttaa gtctcaggag ccacaagtca 4201 caccggccca ctatcgctca aatccattct acacagatgt cgattacgag ctggatgata 4261 atcaaagcat ggatataagc cctgcctggg gatatgaacg caatttgagt gtagtgcata 4321 gtaattccgc tccaaattcc actaccacat ctaccgcttt agtgcctatg cgtcttcaga 4381 acatggaagt tgcactgcca gcagatcttt ctgtagtacc cgaaacggga ttggtaatac 4441 gacaagacag tcaggaggac gattctttac gagaaattgg gaatgccatt gaaaataccg 4501 atggctcaac ttcgccagcc atggagtatc gtttctcctt gcaacccata acaatgtccg 4561 cagaaaacac tggcatggaa gtggttctgc gtgatggcca agcaccgggt ccctcaaaca 4621 cgatagcagg tgtcaatcaa caagtggcca cacaaaatca aagacaaaac caaccggaca 4681 tgttcccgcc aacaactccc aacacaattg gcagcttgat tccatttcca cgtgtacaac 4741 ctgtggctgt gccaagcacg aatatggata taataccctc gaatccaggt gccttgggtg 4801 tgggacgtac acgacttgcc tacgaagtga gcaacagaaa acgttcggta gaaaatgcga 4861 tcgatggtca tagcaaagac gatgttgtaa ttgatgaaag tatactctcg ctactactga 4921 aactacattc gcaattaagt ggcacccttg acagcttctc tgtcgctgac gatggtgatc 4981 aggaagatga gtccctatcg tcatctaccg ccatggatgt ggactctgag agttctgcgg 5041 agccctcaac ttcttcggca gctgctgctg cagcctctag tcaaacgaaa aaacgcaaca 5101 tcaaagtatc cgattcacgt gttggtgatg gacctttctt tattgggaat cttctgcgga 5161 agatagccaa acatgatgag ctatgtgctc aaaacataga cgaaatacgc cgtaggctat 5221 ggcccaacca aagggagaaa caagccgaag cgaaggcccg tgaagctaaa gagaaggaag 5281 agcgacgcaa acgagcccgt gaaagacaaa tgaagatgat gcaagaattt gccaacaaac 5341 aaaaggagtt tatgcaaaca gctgcagcca ccaatatgga tgcaggcatg gaggaagagg 5401 aggagttata cgaagagcaa ccccgcgaaa aagaatatga ttgcattatt tgcaattgca 5461 ctacacccag taccgaagcc aatccaattg gtcttgttgt cttggtggaa tccagcggca 5521 ttgtaggtca tcggcgccgc atcacagaaa ggttaccgct acccctaagt ccggaagatg 5581 aagagcgact gaaacacagc acacggctag ccactgaatt caatcgccgc actgaacttc 5641 taagtttgaa gtttggcgaa gaatcatggt atctctcaaa taatatggcc tatgaaaatg 5701 gggttcacgt gcagtcgtgt ggtcaccatg tgcaccttag ttgtttggat gcttatttga 5761 aaacattgta cgccagccaa agacaacatc aacacgagag gggagaattc tactgtcccg 5821 tgtgtaggca gctgtccaat tcagtactac cgttgagccc acagctggat cgtccaacgc 5881 cagtagtgcg ttcgggaaca caaccatttg agcaattggt atctgagttg accaatctaa 5941 taaaggaaaa tgaaagacca ccgatctcaa caaaattatc tgaagctatg ggtcgtgcaa 6001 tggaagatat gacaaacata acacatcgga agatgaaaag aataccacca acgttccgaa 6061 gcctattcat atttgttacc tcaattgctc gcaccaatct cgaatcagag attatacaaa 6121 gaggtggcac attgtgctcc acaaatccca cacgatacaa agcgaaacgt gactgcattg 6181 tacccctgtt gcatgtactc tctgtacatg tacgggtgct ggtcgaatgg ccgttgtgga 6241 gttcttgggc ctctttggcc ggtatgccag ttacagatat tgcaccagta ccctcacact 6301 gccgtgaagt gataccagcc attttggccg atcccatagc gttgctactg aagtttatac 6361 ttctggctcc tctacatcta gatcaagaat acttctcttg catggtcaag gttatgtaca 6421 acctattgta ctaccaaatt gtggtccaac tttgtgttac tttaaccgat ctcgagtgtg 6481 attatatttt agccaacttt aatgcaccgc cttccgctga atcgcaacct tcttccagcc 6541 gtcgaaattc gatgcgttcg tctcccaatg cctacttggc cagagccatg gctttagttt 6601 taaagaatac caatcgtttg tcacacctaa ggcgtgatag tataccatcc acctcagcag 6661 ctgcttcggc catgaattcg gccacagcaa atgccgcctc ccccagcgtc agcagcagca 6721 acagcaacag caacatcgat gttgattctc caaccacttc gccactggcg ggcgtggaag 6781 tcaacttcaa atctatggaa atgcaactgc aaacattgtg tttgcccttt ctgcgtattg 6841 ccgccttgct acgtcagcat ttgtataggc acgaaatgcc ggaaatttca gcgccaggcc 6901 tggagtttgt gcgtttagtt tactatctgg aacttgtaac ggattcaatg gattgggatt 6961 gtttcaatgc ctcaaaaggg ctatgtttta taccgggcgg ctcagaggac actctgccaa 7021 agttttggtg tgagcagtta atgaatatcc gaccaccaac ggacacggta cgagaattag 7081 tgattcttaa tcaacacgct tcgtggcaac aaccaaagtt gctgcaactg cctagggaat 7141 atgagcgatt atttacgtat tatcatgaaa ggccttgttt aaattgctat aaggtaccta 7201 aggaaagttc aatatgttta ttgtgtggca caattgtgtg tctgaagcaa aattgctgtg 7261 ccgagaatga atgctgcgaa gctgtgaggc atactattac ttgtggtggt ggcattggta 7321 tattcctggt tgtaacttca acgtatataa ttgtgataag aggacgacgg gcatgtctct 7381 ggggttcact ctatttggat gactttgatg aggaagatag ggatttaaaa cgagggaaac 7441 ccttatattt gagccaggat cgtttcaatt tactggaatc ccaatggtta tcacacaaat 7501 ttgcccatac gaagcacacg tgggtattcc acagagatct gttgtgaaat atacaagatc 7561 tattacgtaa tatccaagac atgatagtag acatttgagt taagttcatt tcaatatacg 7621 actatattcg acctatatga aactata