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LOCUS XM_013253132 3241 bp mRNA linear INV 02-SEP-2023 ACCESSION XM_013253132 VERSION XM_013253132.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013253132.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3241 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3241 /gene="LOC106087917" /note="ubiquilin-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:106087917" CDS 189..1766 /gene="LOC106087917" /codon_start=1 /product="ubiquilin-1" /protein_id="XP_013108586.1" /db_xref="GeneID:106087917" /translation="MAEGGNRRILVNVKTPKEKKMIEVDEDSGIKDFKALVAEKFEAE PEQLVLIFAGKIMKDTDTLQTHHIKDGLTVHLVIKAKTRSGEPAQRAPADVRQTPFGL NTLGGLSGMEALGAGSGSFMDLQARMQSELMNNGDMLRTMLDNPMVQQMMNNPDVMRQ LITSNPQMQDLMQRNPEISHMLNNPELLRQTMELARNPSMLQELMRSHDRALSNLESV PGGYNALQRIYRDIQEPMMNAATESLSRNPFAGLVDNGSGNNPQMGTENREPLPNPWG GRGNASGTGSGTTANPDLPPRGVLNTPAMQSLLQQMSENPSLMQNLLNAPYTRSMFEA MNQDPDMAARLLSTSPLLANNPQLQEQVRQMMPQFMAQMQNPEVMNMLSNPEAINAIM QIQQGMEQLRSAAPGLVGSLGVPPAPPGNTNTDTNTTNTTTNTTASDSRPATAPGGGP NAQLFNDFMTRMLNGMSTTADNTQPPEVRYQSQLEQLAAMGFVNREANLQALIATFGD INAAVERLLSLNQLSLS" misc_feature 207..425 /gene="LOC106087917" /note="ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins; Region: Ubl_PLICs; cd01808" /db_xref="CDD:340506" misc_feature 219..1337 /gene="LOC106087917" /note="UV excision repair protein Rad23; Region: rad23; TIGR00601" /db_xref="CDD:273167" misc_feature order(228..230,339..356,402..413,417..419,423..425) /gene="LOC106087917" /note="Pru interaction site [polypeptide binding]; other site" /db_xref="CDD:340506" misc_feature order(318..320,327..329,339..341,345..356,360..362, 411..413,417..425) /gene="LOC106087917" /note="putative S5a binding site; other site" /db_xref="CDD:340506" misc_feature 1623..1733 /gene="LOC106087917" /note="UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins; Region: UBA_PLICs; cd14399" /db_xref="CDD:270582" misc_feature order(1653..1670,1716..1718,1725..1733) /gene="LOC106087917" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270582" polyA_site 3241 /gene="LOC106087917" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agaatcgatt aaaatcgaaa tcgattcact agaaatattc acattaaatt cacattaaat 61 taatacttac aaaaaaaata aaaaaacggc aatataaatt atagtgaatc cacctttgag 121 agacaaaagg cagcagcaaa aattgaaagt gaaaaaattg cagttgacat caaagagcag 181 cgatcaaaat ggccgaaggt ggaaatcgaa gaattttggt taatgtaaaa acaccaaaag 241 aaaagaaaat gattgaggtg gacgaagatt ctggaataaa ggatttcaag gccttggtgg 301 ctgaaaaatt tgaagccgaa ccggaacagc tggttttgat ttttgccggc aaaataatga 361 aggataccga cactctgcaa acacaccaca tcaaggatgg ccttacagta catttggtta 421 tcaaggccaa aactcgcagc ggcgaaccgg cacaacgtgc tccagccgat gtgcgccaga 481 ccccatttgg cctcaacact ttgggtggtc tctccggtat ggaggccttg ggtgctggct 541 ccggttcctt catggatttg caggcccgca tgcaaagtga gctcatgaac aatggcgata 601 tgttgcgcac catgttggat aatcccatgg tgcaacaaat gatgaataat cccgatgtta 661 tgcgtcagtt gatcacctca aatccccaaa tgcaagattt aatgcaacgc aatcctgaaa 721 tatctcatat gttgaataat ccagagttat tgcgtcaaac tatggaattg gccaggaatc 781 cttctatgtt gcaagaatta atgcgctccc atgatcgtgc tctttcaaat ttggaatcgg 841 taccaggtgg ttataatgct ttgcagcgta tttatcgcga catacaagag ccaatgatga 901 atgctgctac cgagtcattg tcacgcaatc cttttgcagg tcttgtggac aatggaagtg 961 gcaacaatcc acaaatggga accgaaaatc gtgaaccctt gccaaatcca tggggtggac 1021 gtggcaatgc ctcgggcact ggttctggca ccactgctaa cccagacttg ccacctcgcg 1081 gtgtcctcaa tacgccagct atgcaaagtc ttttgcaaca aatgtctgag aatccctcac 1141 ttatgcaaaa tctattgaat gcaccctaca ctcgttcgat gtttgaagct atgaaccagg 1201 atcccgatat ggctgcacgc ctactgagca ccagtcccct gttggccaat aatcctcaat 1261 tgcaggaaca agtacgccaa atgatgccac agtttatggc acaaatgcaa aatcccgaag 1321 tcatgaatat gctatcaaat cccgaggcca ttaatgccat catgcaaata caacagggca 1381 tggaacaact taggtcggct gcacccggtt tggtgggctc tttgggtgta ccgccagcac 1441 caccaggcaa caccaataca gacacaaaca ccacaaatac cacaaccaat acaacagcat 1501 ctgacagtcg gccagccaca gcaccaggtg gtggtcccaa tgcacagctt ttcaatgatt 1561 ttatgactcg catgttgaat ggtatgtcga caaccgccga taacactcag ccgcctgaag 1621 tgcgttatca atcacaattg gaacaattgg ccgccatggg ctttgttaat cgtgaagcaa 1681 atttgcaagc attgattgcc actttcggag atataaatgc agctgttgaa cgactgttat 1741 cgctaaatca attgtcctta agttaacaaa cctaaacccc ctgcctcctc cccttgtgta 1801 cgtcagcgtt tttcttcatt cttattttat aaatataact aactatatac atatatatat 1861 atatatatac aactatatac tatataaaaa aacaacaaca gagagagaaa caaaaaatca 1921 cacaacatat aaacaaaaca aaataattat acttggcttg gattgaggtt gaactctaat 1981 ttaaagaaac aaatttccaa caaaatacat agctcaacag aataaagaca acaacaccac 2041 taatcgacga aaatgttgaa aatttgaaaa cccttaaagc aaaaaaaaaa aaatatattg 2101 tataatttta gttgcaggca cgcggtccca ttttttgggg aattatttca aggaggggta 2161 ccatagaaaa actaaagttt ggaatttttg ctttgcttgt tggtatgaat tttactaatc 2221 taatttaagt atcgggtatt gatgtttagt ttataatcac acccacacac ccataagagg 2281 gtatgtaagt atatcgatat tttccatcga tcgattcaaa taggtccaca taaccaaaac 2341 caatccctta aaatatagta catgctaagt tgtgttgtat aatttatgat cccgatgccc 2401 ccctacgccc tcacacactt caaaccttag gaagaagaag ctatatgtat tcgcctaaac 2461 tattccaaaa acaatttgat tgttaagtgc atactatata tccccctgta taatcataaa 2521 aacagaataa ttttctaaaa taaaaacaac agaaaaaact gtttttcagt taaaaaaaaa 2581 agaaaaccct aaatggaact attacaccag acattttatt gtcatttaat gtaattttct 2641 tatttcgatg tttattattt aaaacagaaa aacaaaaaca aaaacttcat atatgaattg 2701 ttctactcta tatatatata ttatattgta tttacataaa aatatgattt aattgcttga 2761 gcaaaacaaa taactaaaat tttgtgttgg cccccatccc ctcagtttgc tgtttttttt 2821 ttttttaaat ttggtttttt tattgtcgag agcagttttt ggtctggagc tctgctgctt 2881 tttgtatgac ttagaaatga gagaaaacaa aacaaaacaa aaaaactaca ctcaaaagca 2941 gttgcaaatt tgtattgtac ataggcataa ctataacaaa tcggtataaa acaatagagc 3001 aaaaatactt ttatttacta taacaaaata tttagaaatt tgtgtagaca acagacaaga 3061 agtcagacaa acatacctac atacatggat ggtgccacct gcgttgcata atggaaaaca 3121 ttgagaaaaa aaaagagcca gattcacaaa cagaaaaaag gattaactga aaaattcatt 3181 ataagtttaa atataacggg atacaaataa agtttgttct ttatttttaa atttaaagaa 3241 a