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LOCUS XM_013253116 5782 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013253116 VERSION XM_013253116.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013253116.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5782 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5782 /gene="LOC106087909" /note="protein MMS22-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106087909" CDS 49..3438 /gene="LOC106087909" /codon_start=1 /product="protein MMS22-like" /protein_id="XP_013108570.1" /db_xref="GeneID:106087909" /translation="MDFDLFETDEDDDILSMVIEPTQMPNEGVVNEIIPELQCQGEDS MNSQFSADGFVKNVFLQSYSSINNKAVEEITLTKYEFQKEHLSIGAVNGFVFGEACMN VQYLIASLNGILGNCGESSYYQRRHHITLLLHIVLHTTHPEQWPLLQPHLKRLRSLLS NCVQMDTLKCIYFANSSKGNDCNISAYHLLHGLLEWTFLDVCILQKYALCKNTIDCNE AESSNENSSLLINQLEKFIDILLGCSIFHFSKKRTAEYMFSSAFPCTCVKEMWLLLQL ALEKWTLKTQEGEYITCWYLFNRAMLKIKDNMEMLALTPLNYCEFFNWIQNALVHLHG YRSNGQFEGPSYHRPLTTSKENYEFCERITQHFLNANPNEEHLRIYIGLLTPVLLEWW EPKVNIAMVLWEHFHKKLNSSFYIAGAAPSNLAVSCASGRAYVEKYRNLLNKPPDANL SSYTLFVLLMGKSLQKLLTIQANHQAQKLLGRIYAKFSAQKFLALNETGIHHLIELFL VLALCGDFSDLSGKLKDKLLSIAFDKVTAPKQVAVAKGHMALWILFAENQYDLTDYIT KILQQLTAIRNDLAVSKILADTLLDIFDHADTFQRGESLLVGPWIPDFLNNCTPVEQE RTLEALHLIFVKMQHCELFLESNNNLMKALNTSILPFVKQQYMTNFSRWLPILASDFC VHSFAVTDTQNFQKLFAYFTEQQPSNRYFVPQFLLLVLESERKSLIDHTTIMHIWLRS LVVLTSSNEDVVKLTKIVVNLEEFQCMTNIEPEELLKAKEPLCIFVAAVGKTYESTSD ETKRNTIANNFNAYVRNFEKWLNTDLKLEKSELIFRFFSFLAITIFNCPHIVYVNSKI TCFFHIAITRYILPLSIQMGKPPEGKLAQLVHKIWPVLVQGIGRLNFKSDAYLNKTLS DLIQKWTPHFKISTNVKQVARPFISCLQSDNHDLSLFVFEKLTALFLSTQRRQADPNA CLVISIYQEIVDSITTNANDVNATSRLQTFLKGCSFATLEHIMMVDEIVPSRHLLLDL FKRLFNSPVYQNSLQSKELIREHLRLLTKKHLSYYTFFYFDLLMKLCAISFETIEDIM PFLMDEIKIVEQKRGAGEDNRIRTCLQKLQLCIKQAKSKLL" misc_feature <721..>1731 /gene="LOC106087909" /note="S-phase genomic integrity recombination mediator, N-terminal; Region: MMS22L_N; pfam14910" /db_xref="CDD:464366" misc_feature 2293..3402 /gene="LOC106087909" /note="S-phase genomic integrity recombination mediator, C-terminal; Region: MMS22L_C; pfam14911" /db_xref="CDD:464367" ORIGIN 1 agtttgatat tatttttttt tgaaaagaaa cagctttgcc gcagtagtat ggattttgat 61 ttatttgaaa ctgatgaaga cgatgatata ttgtccatgg tcatagaacc cacccaaatg 121 cccaatgaag gtgtggtcaa tgaaataata ccagaactac agtgtcaggg cgaagattcc 181 atgaactcac aattctcagc ggatggcttt gttaaaaatg tttttcttca aagctacagt 241 tccattaaca ataaggcagt tgaggagata acgctgacaa aatatgaatt tcaaaaagag 301 catctcagta ttggtgccgt taatggattt gtctttggag aagcttgcat gaatgttcaa 361 tatttgatag ccagccttaa tggtatatta ggtaactgtg gggaatcttc ttactatcaa 421 cgtagacatc acataacatt gctattgcat attgttcttc atactacaca tcccgagcag 481 tggcccttgt tgcagcctca cctaaagaga cttaggtccc tacttagcaa ttgtgtacaa 541 atggatacac tgaaatgtat ttacttcgcc aacagctcca agggcaatga ctgtaatatt 601 tctgcatatc atttactaca tgggctgttg gagtggactt ttttagatgt atgtattttg 661 caaaaatacg cattgtgcaa aaatactatt gattgcaatg aggcagaaag tagcaatgaa 721 aatagttcct tgctaataaa ccagctggaa aagtttattg atatactact tgggtgttct 781 atatttcact tttcaaaaaa acgcaccgca gaatatatgt ttagctccgc atttccttgc 841 acttgtgtca aagaaatgtg gctattgtta caacttgcgc ttgagaaatg gacattaaag 901 acacaagaag gggaatatat aacttgttgg tatctgttta atagagcaat gctgaaaatt 961 aaagataata tggaaatgtt ggctcttact cctcttaact actgcgaatt ctttaattgg 1021 atacaaaatg cattggtgca tttacacggt tatcgttcca atggtcaatt tgagggcccg 1081 agctaccata gacccttaac taccagcaaa gaaaactatg aattttgtga gcgcataact 1141 caacactttc tcaatgcaaa cccaaacgaa gaacacttac gtatatatat tggcctattg 1201 acacctgttc tgctcgaatg gtgggagcca aaagttaata ttgctatggt gttatgggaa 1261 cactttcaca aaaaattaaa ttcctccttc tacattgctg gggcagctcc ttcaaattta 1321 gcagtatcat gcgctagtgg tcgagcctat gtcgaaaaat atcgaaatct tttaaacaaa 1381 cctcctgatg ccaaccttag cagttatacc ctttttgttt tacttatggg aaagagtttg 1441 caaaaattac tgaccattca ggctaatcat caggcccaga agttattggg tcgcatttac 1501 gcgaaattca gtgcgcagaa atttttagcc cttaacgaaa caggcattca tcatctaatt 1561 gagctgttcc tagttttggc tttatgtggc gactttagtg atttgtcggg caagttgaaa 1621 gataaacttt tatcaattgc tttcgataaa gtgaccgcac ccaagcaagt ggctgttgct 1681 aaagggcata tggctttgtg gattttattt gccgaaaacc aatacgattt gacggattat 1741 attacaaaaa tactgcagca gttgactgcc atacgcaatg acctggcggt gtcaaaaatt 1801 ttggctgaca cactactgga tatatttgac catgcagata cctttcaaag aggagagagt 1861 ttattggtgg gtccttggat accagatttc ttgaacaatt gtacccccgt agagcaagaa 1921 cggactttag aagctttaca cttgatcttt gtaaaaatgc aacattgcga gctttttctc 1981 gaatcaaaca ataatctaat gaaggcactc aacacctcga ttcttccgtt tgttaagcaa 2041 caatatatga ctaacttcag ccgttggttg ccgattttgg cctcagattt ttgtgtgcat 2101 tcatttgctg taacggatac gcaaaacttc caaaagcttt ttgcttactt cactgaacaa 2161 cagccttcaa atcgctactt tgtaccacaa ttcctattgc tagttttgga atcagagcgc 2221 aaatcattga ttgatcatac aacaataatg cacatttggc tcagaagttt agtggtgttg 2281 acgtcaagca atgaagacgt tgttaaattg actaaaatcg tggtcaattt ggaggaattt 2341 caatgtatga ccaacataga acccgaagag cttttgaaag cgaaggaacc tttgtgcata 2401 tttgtagccg cagtgggtaa aacttatgag tctacctctg atgaaacaaa acgcaatacc 2461 atagcaaata acttcaacgc ttatgtacgc aatttcgaaa aatggctaaa tacggatctt 2521 aaattggaaa agtcagaatt gatttttcgt ttttttagct tcttggctat aaccattttc 2581 aattgtccac acatagttta tgtcaattca aagataacat gcttctttca catagccatc 2641 accagataca ttttacctct cagcattcaa atgggtaaac cacctgaggg aaagttggct 2701 caactggtac ataaaatatg gcctgtcctg gtacaaggaa tagggcgttt aaatttcaaa 2761 tcggatgcct accttaacaa aactctatcg gatctaatac aaaaatggac acctcatttt 2821 aaaatctcca ccaatgtcaa gcaagtggct cgccccttta taagttgtct acagagtgac 2881 aaccacgatt tatcgttatt tgttttcgaa aaactcactg ctttattttt gtccactcaa 2941 cggaggcaag ctgatccaaa tgcttgcttg gttattagca tctatcaaga aattgttgat 3001 tccattacaa cgaacgccaa tgatgtaaat gccaccagtc gtctacaaac attcctaaaa 3061 ggatgtagct ttgctactct agaacatatt atgatggtcg atgaaattgt acccagccgc 3121 catttactat tggatttatt caaacgtttg tttaatagtc ctgtctatca gaattcccta 3181 cagtcgaagg aattgatcag ggagcatttg cgtcttttga ccaaaaaaca tttatcctat 3241 tatacattct tctactttga tttgctgatg aaactttgtg ccatttcatt tgaaaccatc 3301 gaggatatta tgccattttt aatggatgaa ataaaaatag ttgaacagaa acgtggcgct 3361 ggcgaagata atcgtatacg aacttgtttg caaaaacttc aactatgtat aaaacaggct 3421 aaatcaaaat tgttataaaa taacttattt gttagtgtat acatgtgttg tccttatgtt 3481 cttaagttat ttcatatttt tttttaagtt gtctttttac gtaattttag aacctatatg 3541 gtataaagaa aatccttctt cttaaatatc aaaaataatt ttttaccatt tttgttttta 3601 attttttaaa catcccaaat aaggatttca cagaacggat tttgatattg ggctacattt 3661 gcatgtaagt gtcccaaaat acgtggtttc acatttaaca gctcttacaa attctcctca 3721 catgccacag caatttgcaa caaagtcaat ctcccccagc aaaccagagt aattctggct 3781 caattacgat ccggcagatg cagccgcctc aattcctata gagcaagtgt tgataccaac 3841 gtgtaggata tatgtcccga ttgtaaccag ggaccacaaa atatattctg gttgcgattt 3901 gaaattaaga gacagttcga tttgtttgcg tctgtatgca gataatttcc atgagcccat 3961 ctagaaacaa tatccaaatc ttcatatatt ttgagaaatc cttgaggtat gtcagattta 4021 tgaaagctca gatagagcta gacatcatgg gcatatatgt gtatagagga atatgtgagc 4081 cggggtggaa ggtcacttat gtacgtccag aaaagcagtg gttccagtgg tccctgcggt 4141 aaacctttat tcaattgcag agatttgaac attaggtctt taattacaac agattgaaat 4201 ctcaggtaga ggtagttctt tatcaataac acagcagagt cggaaaaatt aaaatagcgc 4261 ttcagcaaag tacatcatga tggacacagt cgaaggcttt tgagttatcc aacagtacta 4321 gacatgttac ttgtccatca tcaatatttg atgtaatgtc ttcggtaaca tcgattaaag 4381 cggtgatgca gctatgtctt ggcctgaaac cagactgttt ggtggataac aggggggact 4441 catttaagta tgtacttatt tacttatggg ttattttctc aaaagccttt gatgagaatg 4501 gcagaatgga tattgggcga tagtcatttc catgttttaa ttttggcact ggtgtcactt 4561 ttgaatgttt ctatccgaac ggatatatgc ttgtagtcaa tatagtgttg gaaaagtggg 4621 tactataagg cagtatatac ggtaaagtgc attttatgaa ttttggatgt acaataagtc 4681 atccaaacca tcagccccca tatacatcaa taggctgagc acatgcaaat tcaaaagttg 4741 tgaattcagg aaatattggt gcattcgata aaacagttga tgtgtttctt tgtacattaa 4801 gatttatatt caacgttcac tgtgcagttt agaaaataag cattcacttc atctggatca 4861 gcatcaattt cgactggatg ggtagaacca acgccaattt ctcgtattgt tttccactct 4921 cttttcgaat cagttgcctc ggtgtatctt ttggcgacag ttctgagtgc tcgatagtct 4981 tcatgtaact gtggagactt aaaacgcttt catcgtctat aagccaaatc tcttttataa 5041 attaatcgtt taatcggatc actgaatcaa cagttctgag tccttcgtgg acgttatgta 5101 cagacagaca cggtacagtt aagaagatgc agtagatatt tattgagaat taaattctac 5161 tgcatcagtg gaagaaatat catatatttt agcccaatat gtgtacgttt ccagcagaat 5221 ccagcgtggt gggtactggg gtgtacattt atttgtattt ttggaataat caattaatcg 5281 tttatttaaa aattcagttt caacgattac tccaacataa cgaaaatggt cgtcaattaa 5341 tcgaataaat gctacatcgt ttcaaatgtt taatttaatt aatctgctaa tacatgatca 5401 gacatgtcat atgaacggtc tgtttctgta ttcataagac ttgtcttatg tacatcaaat 5461 acgaatagag cgcactctta aaaagtgatt gtggcggggg tccaaaacgc tgaaaaaatt 5521 taataaaatg aataaatgag tatgcttctt gcataaaact gctgcaaaat acgtcttaaa 5581 gaatttaatc ttccttttgt ctaaataatt ctaaaggaat caaacaaacc acttaaaatt 5641 ttaataactg ggatacgatg cttactgcaa tacatgctta aaaaataaca ctcaaactca 5701 ggggtataat cttaaaattt attattcgtt ttttttttat atatgtatat gtatagacaa 5761 tatgcatagt cttaagtatt ga