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LOCUS XM_013252769 4220 bp mRNA linear INV 02-SEP-2023 (LOC106087653), transcript variant X3, mRNA. ACCESSION XM_013252769 VERSION XM_013252769.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252769.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4220 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4220 /gene="LOC106087653" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins" /db_xref="GeneID:106087653" CDS 79..3333 /gene="LOC106087653" /codon_start=1 /product="histone deacetylase 6 isoform X2" /protein_id="XP_013108223.2" /db_xref="GeneID:106087653" /translation="MVKSSVDNRKPNAALLEAKRKAKLLKMQQPTQIDGAIKDIFQNA VNAKHMMQGPTGLVYDESMSQHRCLWDDKHPECPERFIRVLDRCRELNLVERCQIIPS RRATKDEIMLLHSDEHYKLLEQTSGVQDDEKMEDLSSKYDSVYIHPSTFDLSLLSAGS TIDLVENVVTGAVQNGMAIIRPPGHHAMKAEFNGYCFFNNVAIATQYALDVLKVNKIM IIDWDVHHGQGTQRFFYHDPRVLYFSIHRFEHGTYWPNLKESDFDAIGYGPGLGYNFN LPLNKTGMTNGDYLAIFQQILIPVACEFQPELIIISAGYDAALGCPEGEMEVTPAFYS HLINPLLKLANSRLAVVLEGGYCLDSLAEGAALTLRALLGEPCPSLVEKLDPPCPSIQ ESILNCIYAHRSYWKCLQAQDTYTMEDINNVNPQINLHKVSRVFIGGPPLPERFPTRG TGPNIPLEVVERNAQRLKRLKAETKLFSPKVRVCYVYDELMLQHANTYEEGHPEQPER ISKIYEMHQDYKLLERMQKLPSRSATTNEICLAHTRSHLNSIRRIGEKDELQNMGAKF NSVYFHPKTFECATVAAGSVLQVVDKVVKGEARSGVCIVRPPGHHAESDVPHGFCIFN NVAIAAQYAINDHGLNRVLIVDWDVHHGNGTQHIFESNPQVLYISVHRYDNATFFPKS KDGDYDSVGKGAGVGFNVNIPWNKKGMGDLEYIMAFQHIIMPIAYEFDPQLVLVSAGF DAAIGDPLGGCKVTPEAYGLFTHWLSALANGRIIVCLEGGYNVNSISYAMTMCTKSLL GDPIPSVQLNGSLMRPPTVAYLSCMETLQNCIGVQHRYWKSLTFGKRLPQVSGENNNE DFLSATLQNLDITRDDVQGAAGGSGDSGQNISLEASGSKPKVKVKTLTEYLTEHMQAF ENNEMFAVVPLKNCPHLSQLHPEDAPKSINTSLPCNECSSTAENWMCLSCHKVLCGRY VMEHMMFHNIETSHPLALSFSDLSVWCYPCESYIDNSKLHIYKNLAHLHKFGEEMQWA YDDDSHSNHRHPNNGSDSDDDDEDDENNHQAGCNRAFGTQQNSYYIQLNTDTNN" polyA_site 4220 /gene="LOC106087653" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcagttgtg catatttagc gagttcgcct attgttaccc gacggggagc acaaaaagct 61 aaaatacaaa ctagagccat ggtcaaatcc tcagtagata atcgaaagcc aaatgctgca 121 ttactcgagg caaagcggaa agccaaacta ttgaagatgc aacaacctac acaaatagat 181 ggagcaatta aggacatatt tcaaaatgcc gttaatgcaa aacacatgat gcaaggaccc 241 actggtctgg tatatgatga atctatgtcg caacacagat gcctttggga tgataaacat 301 ccagaatgtc cagaaagatt tatacgtgtg cttgatcgat gtcgcgaatt aaacttggtt 361 gaacgttgtc agattatacc ctcaagacgt gctacaaaag acgaaattat gcttttgcat 421 agtgatgagc actacaaact gctggagcag acgtcagggg ttcaagacga tgaaaaaatg 481 gaagacttaa gttcaaaata tgactcagtt tacattcatc cgagcacttt tgatttatct 541 ctactttcgg cgggttcaac tatagacttg gtggaaaatg ttgttactgg tgctgtgcaa 601 aacggaatgg caattatacg accaccagga catcatgcca tgaaagctga atttaatggc 661 tactgttttt tcaacaacgt tgccattgcc acacaatatg ccttggatgt attaaaagtg 721 aataaaatta tgataatcga ttgggatgtg caccatggcc agggtaccca aagatttttc 781 tatcatgatc ctagggtatt atatttttct attcatcgct ttgaacatgg cacctattgg 841 cctaatctaa aggaatccga ttttgatgcc ataggctatg gtcctggctt gggttataat 901 tttaacttac ctttgaacaa aactggcatg actaatggag actatttggc catcttccaa 961 caaatactaa tacctgtggc atgtgaattc cagcctgagt tgataattat ctctgcggga 1021 tatgatgccg ctttgggttg ccctgaaggc gaaatggaag taacacctgc attttattcg 1081 catcttataa atcccttgct aaagttggcg aattcacgtt tggccgttgt tctagaggga 1141 ggttattgct tggattcctt ggcagaaggt gctgccttaa cattgagggc gcttttggga 1201 gaaccatgtc cttctttagt ggagaaattg gatcctccct gtccctctat acaagagtca 1261 attcttaatt gcatttacgc tcatcgttca tattggaaat gcttgcaagc acaagacaca 1321 tatacaatgg aggacataaa caatgtcaat cctcaaatca atttacataa agttagtagg 1381 gtatttatag ggggaccacc attgcctgaa cgcttcccca cccgaggtac tggccccaat 1441 attcccctgg aggtggtgga gcgtaatgca caacgtttga agagattaaa agcggaaaca 1501 aaactctttt caccaaaagt gcgagtctgc tatgtatacg atgaactaat gttgcaacat 1561 gccaatacct acgaagaggg tcatcctgag caacctgaac gcataagtaa aatttacgaa 1621 atgcatcaag actacaaact attggaacgc atgcaaaaac tgccttctcg ctcggcaacg 1681 acaaatgaaa tttgtttggc ccacacacga tctcacctga attctatacg gcgcataggg 1741 gagaaggacg aattgcaaaa catgggggcc aaattcaatt ccgtctattt tcatcctaag 1801 acattcgagt gtgcgactgt agctgcgggc tcagtgctgc aggtggttga caaagttgtt 1861 aagggagaag ctagaagtgg tgtttgcatt gttagacccc caggccatca tgcagaatca 1921 gatgttccgc atggcttttg catattcaat aatgtggcaa ttgccgccca gtatgccatc 1981 aatgaccatg gcttaaacag ggtgttaatt gtcgactggg atgtgcatca tggtaatggt 2041 actcagcata tatttgaatc caatccccag gtactttaca taagtgtgca tcggtatgac 2101 aatgcaacat tttttccaaa aagtaaagat ggtgattatg attcggtggg taaaggtgct 2161 ggggttggtt tcaatgtgaa cattccctgg aacaagaaag ggatgggcga tttggaatat 2221 atcatggctt tccagcatat tatcatgcca attgcttatg aatttgatcc tcaattggtc 2281 ttggtatcag ctggatttga tgctgccata ggtgaccccc ttggtggctg taaagtaaca 2341 cccgaagctt atggtttatt cacacactgg ctatcggctt tggctaatgg ccgcatcata 2401 gtttgccttg agggtggcta caatgtcaat tccatatcgt atgccatgac aatgtgcacc 2461 aaatccttgt tgggtgatcc cataccatca gtgcaattaa acggcagtct tatgcgtccg 2521 cccacagtag cctatctcag ctgcatggaa accttgcaaa attgcattgg agttcaacat 2581 cgctattgga aaagtctaac ctttggcaaa cggctgccac aggtgtcggg agaaaataac 2641 aatgaggatt ttctttctgc tactttacaa aatttagata ttacaaggga tgacgttcaa 2701 ggagcagctg gtggttccgg cgactccggt cagaatatat ctttagaggc aagtggcagc 2761 aaaccgaagg taaaagtcaa aactctaacc gaatatctca cagagcacat gcaggctttt 2821 gaaaataatg aaatgtttgc tgtggtgcca ttaaagaatt gtcctcattt gtcccagttg 2881 catcccgaag atgcgccaaa atcaataaat acgagtctac catgtaatga atgttcctcg 2941 acagctgaaa actggatgtg cctcagctgt cataaggtgt tgtgcggtcg ttatgttatg 3001 gagcatatga tgttccacaa tattgaaaca tcccatccgc tggctctaag ctttagtgat 3061 ttatccgtct ggtgttatcc ctgcgaatca tatattgata atagcaaatt acacatttac 3121 aaaaatctgg cacatttgca taagtttggt gaggaaatgc aatgggccta tgatgatgat 3181 agtcattcaa accacagaca tccaaataat ggtagtgaca gcgacgacga tgatgaggat 3241 gatgagaata accatcaagc aggttgcaac agagcatttg gaacgcaaca aaatagttat 3301 tacatacaat tgaatacgga tacgaataac tgacatttgc ttactgtact ggtcgagaca 3361 gtacagaatc atttgtgcct tttgtttccg tctctgcgac cagtttttca atttcttcta 3421 cagtacatat gccccttggt gcaacgccta tgtgcaaata tattgcacta ctttatggcg 3481 aattgataat aagacattat agtaacgttt taaatgaatt tgactataat atcctttttt 3541 tacatgtaag gtccctgact agcaaattaa gtatgtagtt gtttgctaac aacaaaacct 3601 aactaataat aatattaata gtaataccaa taattataat aactgttata ttgtaaatct 3661 atatgtttct gttatactgc attttccctc ctctgaacaa tgaaggcttt gtaaattttc 3721 cctgttgaat tagtattatt ggattaaaat tggactcctc tttctaacta aaattttaaa 3781 aatcaaacag aattatatat ttttttctta attttatttt aatttttttt taaattgttg 3841 ttttatttca atctaacgac tactgacaac ataatttaga tggatccaat taggtaatat 3901 aaaaatatat agtagtaact aatatcatga ttttaatcgt gtagttcgaa tgtaaattaa 3961 tataacgtaa acaaaattag cattaatcac ttccatacac atctaaatgc gtacattcat 4021 acccacccct caatttaact gaccataaca tataagaata catatatttt ttaagttaaa 4081 atattatcta ctatgattga tgaaatgtaa aattatattg tttttttttt ttttgttaac 4141 ataaaacaaa caaaaccgaa gcattagcat tatattgtat atggacgaat aaacaaatca 4201 ttacatgtcc taatcgaaaa