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LOCUS XM_013252768 4388 bp mRNA linear INV 02-SEP-2023 (LOC106087653), transcript variant X2, mRNA. ACCESSION XM_013252768 VERSION XM_013252768.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252768.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4388 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4388 /gene="LOC106087653" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins" /db_xref="GeneID:106087653" CDS 247..3501 /gene="LOC106087653" /codon_start=1 /product="histone deacetylase 6 isoform X2" /protein_id="XP_013108222.2" /db_xref="GeneID:106087653" /translation="MVKSSVDNRKPNAALLEAKRKAKLLKMQQPTQIDGAIKDIFQNA VNAKHMMQGPTGLVYDESMSQHRCLWDDKHPECPERFIRVLDRCRELNLVERCQIIPS RRATKDEIMLLHSDEHYKLLEQTSGVQDDEKMEDLSSKYDSVYIHPSTFDLSLLSAGS TIDLVENVVTGAVQNGMAIIRPPGHHAMKAEFNGYCFFNNVAIATQYALDVLKVNKIM IIDWDVHHGQGTQRFFYHDPRVLYFSIHRFEHGTYWPNLKESDFDAIGYGPGLGYNFN LPLNKTGMTNGDYLAIFQQILIPVACEFQPELIIISAGYDAALGCPEGEMEVTPAFYS HLINPLLKLANSRLAVVLEGGYCLDSLAEGAALTLRALLGEPCPSLVEKLDPPCPSIQ ESILNCIYAHRSYWKCLQAQDTYTMEDINNVNPQINLHKVSRVFIGGPPLPERFPTRG TGPNIPLEVVERNAQRLKRLKAETKLFSPKVRVCYVYDELMLQHANTYEEGHPEQPER ISKIYEMHQDYKLLERMQKLPSRSATTNEICLAHTRSHLNSIRRIGEKDELQNMGAKF NSVYFHPKTFECATVAAGSVLQVVDKVVKGEARSGVCIVRPPGHHAESDVPHGFCIFN NVAIAAQYAINDHGLNRVLIVDWDVHHGNGTQHIFESNPQVLYISVHRYDNATFFPKS KDGDYDSVGKGAGVGFNVNIPWNKKGMGDLEYIMAFQHIIMPIAYEFDPQLVLVSAGF DAAIGDPLGGCKVTPEAYGLFTHWLSALANGRIIVCLEGGYNVNSISYAMTMCTKSLL GDPIPSVQLNGSLMRPPTVAYLSCMETLQNCIGVQHRYWKSLTFGKRLPQVSGENNNE DFLSATLQNLDITRDDVQGAAGGSGDSGQNISLEASGSKPKVKVKTLTEYLTEHMQAF ENNEMFAVVPLKNCPHLSQLHPEDAPKSINTSLPCNECSSTAENWMCLSCHKVLCGRY VMEHMMFHNIETSHPLALSFSDLSVWCYPCESYIDNSKLHIYKNLAHLHKFGEEMQWA YDDDSHSNHRHPNNGSDSDDDDEDDENNHQAGCNRAFGTQQNSYYIQLNTDTNN" polyA_site 4388 /gene="LOC106087653" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aagcgatacc acttttggtt gagctgttca ttcacgttta tgtgggagca tgagttgtgg 61 tgcgagctca gtttaactgg attgaaaatg ttttgttgtt taatgaatca gtatagtgtt 121 gtcttctaag gcgagttgag tgttgcagta gacgctaaaa gctttgcaac tgccccacta 181 atcgactaga gttcgcctat tgttacccga cggggagcac aaaaagctaa aatacaaact 241 agagccatgg tcaaatcctc agtagataat cgaaagccaa atgctgcatt actcgaggca 301 aagcggaaag ccaaactatt gaagatgcaa caacctacac aaatagatgg agcaattaag 361 gacatatttc aaaatgccgt taatgcaaaa cacatgatgc aaggacccac tggtctggta 421 tatgatgaat ctatgtcgca acacagatgc ctttgggatg ataaacatcc agaatgtcca 481 gaaagattta tacgtgtgct tgatcgatgt cgcgaattaa acttggttga acgttgtcag 541 attataccct caagacgtgc tacaaaagac gaaattatgc ttttgcatag tgatgagcac 601 tacaaactgc tggagcagac gtcaggggtt caagacgatg aaaaaatgga agacttaagt 661 tcaaaatatg actcagttta cattcatccg agcacttttg atttatctct actttcggcg 721 ggttcaacta tagacttggt ggaaaatgtt gttactggtg ctgtgcaaaa cggaatggca 781 attatacgac caccaggaca tcatgccatg aaagctgaat ttaatggcta ctgttttttc 841 aacaacgttg ccattgccac acaatatgcc ttggatgtat taaaagtgaa taaaattatg 901 ataatcgatt gggatgtgca ccatggccag ggtacccaaa gatttttcta tcatgatcct 961 agggtattat atttttctat tcatcgcttt gaacatggca cctattggcc taatctaaag 1021 gaatccgatt ttgatgccat aggctatggt cctggcttgg gttataattt taacttacct 1081 ttgaacaaaa ctggcatgac taatggagac tatttggcca tcttccaaca aatactaata 1141 cctgtggcat gtgaattcca gcctgagttg ataattatct ctgcgggata tgatgccgct 1201 ttgggttgcc ctgaaggcga aatggaagta acacctgcat tttattcgca tcttataaat 1261 cccttgctaa agttggcgaa ttcacgtttg gccgttgttc tagagggagg ttattgcttg 1321 gattccttgg cagaaggtgc tgccttaaca ttgagggcgc ttttgggaga accatgtcct 1381 tctttagtgg agaaattgga tcctccctgt ccctctatac aagagtcaat tcttaattgc 1441 atttacgctc atcgttcata ttggaaatgc ttgcaagcac aagacacata tacaatggag 1501 gacataaaca atgtcaatcc tcaaatcaat ttacataaag ttagtagggt atttataggg 1561 ggaccaccat tgcctgaacg cttccccacc cgaggtactg gccccaatat tcccctggag 1621 gtggtggagc gtaatgcaca acgtttgaag agattaaaag cggaaacaaa actcttttca 1681 ccaaaagtgc gagtctgcta tgtatacgat gaactaatgt tgcaacatgc caatacctac 1741 gaagagggtc atcctgagca acctgaacgc ataagtaaaa tttacgaaat gcatcaagac 1801 tacaaactat tggaacgcat gcaaaaactg ccttctcgct cggcaacgac aaatgaaatt 1861 tgtttggccc acacacgatc tcacctgaat tctatacggc gcatagggga gaaggacgaa 1921 ttgcaaaaca tgggggccaa attcaattcc gtctattttc atcctaagac attcgagtgt 1981 gcgactgtag ctgcgggctc agtgctgcag gtggttgaca aagttgttaa gggagaagct 2041 agaagtggtg tttgcattgt tagaccccca ggccatcatg cagaatcaga tgttccgcat 2101 ggcttttgca tattcaataa tgtggcaatt gccgcccagt atgccatcaa tgaccatggc 2161 ttaaacaggg tgttaattgt cgactgggat gtgcatcatg gtaatggtac tcagcatata 2221 tttgaatcca atccccaggt actttacata agtgtgcatc ggtatgacaa tgcaacattt 2281 tttccaaaaa gtaaagatgg tgattatgat tcggtgggta aaggtgctgg ggttggtttc 2341 aatgtgaaca ttccctggaa caagaaaggg atgggcgatt tggaatatat catggctttc 2401 cagcatatta tcatgccaat tgcttatgaa tttgatcctc aattggtctt ggtatcagct 2461 ggatttgatg ctgccatagg tgaccccctt ggtggctgta aagtaacacc cgaagcttat 2521 ggtttattca cacactggct atcggctttg gctaatggcc gcatcatagt ttgccttgag 2581 ggtggctaca atgtcaattc catatcgtat gccatgacaa tgtgcaccaa atccttgttg 2641 ggtgatccca taccatcagt gcaattaaac ggcagtctta tgcgtccgcc cacagtagcc 2701 tatctcagct gcatggaaac cttgcaaaat tgcattggag ttcaacatcg ctattggaaa 2761 agtctaacct ttggcaaacg gctgccacag gtgtcgggag aaaataacaa tgaggatttt 2821 ctttctgcta ctttacaaaa tttagatatt acaagggatg acgttcaagg agcagctggt 2881 ggttccggcg actccggtca gaatatatct ttagaggcaa gtggcagcaa accgaaggta 2941 aaagtcaaaa ctctaaccga atatctcaca gagcacatgc aggcttttga aaataatgaa 3001 atgtttgctg tggtgccatt aaagaattgt cctcatttgt cccagttgca tcccgaagat 3061 gcgccaaaat caataaatac gagtctacca tgtaatgaat gttcctcgac agctgaaaac 3121 tggatgtgcc tcagctgtca taaggtgttg tgcggtcgtt atgttatgga gcatatgatg 3181 ttccacaata ttgaaacatc ccatccgctg gctctaagct ttagtgattt atccgtctgg 3241 tgttatccct gcgaatcata tattgataat agcaaattac acatttacaa aaatctggca 3301 catttgcata agtttggtga ggaaatgcaa tgggcctatg atgatgatag tcattcaaac 3361 cacagacatc caaataatgg tagtgacagc gacgacgatg atgaggatga tgagaataac 3421 catcaagcag gttgcaacag agcatttgga acgcaacaaa atagttatta catacaattg 3481 aatacggata cgaataactg acatttgctt actgtactgg tcgagacagt acagaatcat 3541 ttgtgccttt tgtttccgtc tctgcgacca gtttttcaat ttcttctaca gtacatatgc 3601 cccttggtgc aacgcctatg tgcaaatata ttgcactact ttatggcgaa ttgataataa 3661 gacattatag taacgtttta aatgaatttg actataatat ccttttttta catgtaaggt 3721 ccctgactag caaattaagt atgtagttgt ttgctaacaa caaaacctaa ctaataataa 3781 tattaatagt aataccaata attataataa ctgttatatt gtaaatctat atgtttctgt 3841 tatactgcat tttccctcct ctgaacaatg aaggctttgt aaattttccc tgttgaatta 3901 gtattattgg attaaaattg gactcctctt tctaactaaa attttaaaaa tcaaacagaa 3961 ttatatattt ttttcttaat tttattttaa ttttttttta aattgttgtt ttatttcaat 4021 ctaacgacta ctgacaacat aatttagatg gatccaatta ggtaatataa aaatatatag 4081 tagtaactaa tatcatgatt ttaatcgtgt agttcgaatg taaattaata taacgtaaac 4141 aaaattagca ttaatcactt ccatacacat ctaaatgcgt acattcatac ccacccctca 4201 atttaactga ccataacata taagaataca tatatttttt aagttaaaat attatctact 4261 atgattgatg aaatgtaaaa ttatattgtt tttttttttt ttgttaacat aaaacaaaca 4321 aaaccgaagc attagcatta tattgtatat ggacgaataa acaaatcatt acatgtccta 4381 atcgaaaa