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LOCUS XM_013252766 4728 bp mRNA linear INV 02-SEP-2023 (LOC106087653), transcript variant X1, mRNA. ACCESSION XM_013252766 VERSION XM_013252766.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252766.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4728 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4728 /gene="LOC106087653" /note="histone deacetylase 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins" /db_xref="GeneID:106087653" CDS 527..3841 /gene="LOC106087653" /codon_start=1 /product="histone deacetylase 6 isoform X1" /protein_id="XP_013108220.2" /db_xref="GeneID:106087653" /translation="MSSPIVTRRGAQKAKIQTRAMVKSSVDNRKPNAALLEAKRKAKL LKMQQPTQIDGAIKDIFQNAVNAKHMMQGPTGLVYDESMSQHRCLWDDKHPECPERFI RVLDRCRELNLVERCQIIPSRRATKDEIMLLHSDEHYKLLEQTSGVQDDEKMEDLSSK YDSVYIHPSTFDLSLLSAGSTIDLVENVVTGAVQNGMAIIRPPGHHAMKAEFNGYCFF NNVAIATQYALDVLKVNKIMIIDWDVHHGQGTQRFFYHDPRVLYFSIHRFEHGTYWPN LKESDFDAIGYGPGLGYNFNLPLNKTGMTNGDYLAIFQQILIPVACEFQPELIIISAG YDAALGCPEGEMEVTPAFYSHLINPLLKLANSRLAVVLEGGYCLDSLAEGAALTLRAL LGEPCPSLVEKLDPPCPSIQESILNCIYAHRSYWKCLQAQDTYTMEDINNVNPQINLH KVSRVFIGGPPLPERFPTRGTGPNIPLEVVERNAQRLKRLKAETKLFSPKVRVCYVYD ELMLQHANTYEEGHPEQPERISKIYEMHQDYKLLERMQKLPSRSATTNEICLAHTRSH LNSIRRIGEKDELQNMGAKFNSVYFHPKTFECATVAAGSVLQVVDKVVKGEARSGVCI VRPPGHHAESDVPHGFCIFNNVAIAAQYAINDHGLNRVLIVDWDVHHGNGTQHIFESN PQVLYISVHRYDNATFFPKSKDGDYDSVGKGAGVGFNVNIPWNKKGMGDLEYIMAFQH IIMPIAYEFDPQLVLVSAGFDAAIGDPLGGCKVTPEAYGLFTHWLSALANGRIIVCLE GGYNVNSISYAMTMCTKSLLGDPIPSVQLNGSLMRPPTVAYLSCMETLQNCIGVQHRY WKSLTFGKRLPQVSGENNNEDFLSATLQNLDITRDDVQGAAGGSGDSGQNISLEASGS KPKVKVKTLTEYLTEHMQAFENNEMFAVVPLKNCPHLSQLHPEDAPKSINTSLPCNEC SSTAENWMCLSCHKVLCGRYVMEHMMFHNIETSHPLALSFSDLSVWCYPCESYIDNSK LHIYKNLAHLHKFGEEMQWAYDDDSHSNHRHPNNGSDSDDDDEDDENNHQAGCNRAFG TQQNSYYIQLNTDTNN" polyA_site 4728 /gene="LOC106087653" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gagtttttcg cgagtgtagc caatggaaga aagaaataat tacacataaa accgaccgag 61 taaagctcat agaatccaaa aaataaaata gctattacat atgcgtgtaa attctttcat 121 gtccatataa gagaaatccc gaaaagaaat tcttaatata cacttacaaa agaaagattt 181 ccaagcataa accaaggtgt gattttttta gtgctttcca aaatgaaata gtttaacaag 241 gacatttatc aatcaatcta aaggccacca tttatcattc cttgcgataa tagctaatgt 301 acttcaatat aaacataatt cttttgaaag ttctgatttt gtgtaatcgt cgggtcgctt 361 gttgatgaat tcgggtcgag gaggacagca acgtgcgtga gaagtgaagt gtgtttacaa 421 taatctccaa caataacaaa atatccaacc tccaacctac ctgccagttt gcctggcatt 481 ttacattcta tttaacgtac aagagacaac aaatcatcat ctcacaatga gttcgcctat 541 tgttacccga cggggagcac aaaaagctaa aatacaaact agagccatgg tcaaatcctc 601 agtagataat cgaaagccaa atgctgcatt actcgaggca aagcggaaag ccaaactatt 661 gaagatgcaa caacctacac aaatagatgg agcaattaag gacatatttc aaaatgccgt 721 taatgcaaaa cacatgatgc aaggacccac tggtctggta tatgatgaat ctatgtcgca 781 acacagatgc ctttgggatg ataaacatcc agaatgtcca gaaagattta tacgtgtgct 841 tgatcgatgt cgcgaattaa acttggttga acgttgtcag attataccct caagacgtgc 901 tacaaaagac gaaattatgc ttttgcatag tgatgagcac tacaaactgc tggagcagac 961 gtcaggggtt caagacgatg aaaaaatgga agacttaagt tcaaaatatg actcagttta 1021 cattcatccg agcacttttg atttatctct actttcggcg ggttcaacta tagacttggt 1081 ggaaaatgtt gttactggtg ctgtgcaaaa cggaatggca attatacgac caccaggaca 1141 tcatgccatg aaagctgaat ttaatggcta ctgttttttc aacaacgttg ccattgccac 1201 acaatatgcc ttggatgtat taaaagtgaa taaaattatg ataatcgatt gggatgtgca 1261 ccatggccag ggtacccaaa gatttttcta tcatgatcct agggtattat atttttctat 1321 tcatcgcttt gaacatggca cctattggcc taatctaaag gaatccgatt ttgatgccat 1381 aggctatggt cctggcttgg gttataattt taacttacct ttgaacaaaa ctggcatgac 1441 taatggagac tatttggcca tcttccaaca aatactaata cctgtggcat gtgaattcca 1501 gcctgagttg ataattatct ctgcgggata tgatgccgct ttgggttgcc ctgaaggcga 1561 aatggaagta acacctgcat tttattcgca tcttataaat cccttgctaa agttggcgaa 1621 ttcacgtttg gccgttgttc tagagggagg ttattgcttg gattccttgg cagaaggtgc 1681 tgccttaaca ttgagggcgc ttttgggaga accatgtcct tctttagtgg agaaattgga 1741 tcctccctgt ccctctatac aagagtcaat tcttaattgc atttacgctc atcgttcata 1801 ttggaaatgc ttgcaagcac aagacacata tacaatggag gacataaaca atgtcaatcc 1861 tcaaatcaat ttacataaag ttagtagggt atttataggg ggaccaccat tgcctgaacg 1921 cttccccacc cgaggtactg gccccaatat tcccctggag gtggtggagc gtaatgcaca 1981 acgtttgaag agattaaaag cggaaacaaa actcttttca ccaaaagtgc gagtctgcta 2041 tgtatacgat gaactaatgt tgcaacatgc caatacctac gaagagggtc atcctgagca 2101 acctgaacgc ataagtaaaa tttacgaaat gcatcaagac tacaaactat tggaacgcat 2161 gcaaaaactg ccttctcgct cggcaacgac aaatgaaatt tgtttggccc acacacgatc 2221 tcacctgaat tctatacggc gcatagggga gaaggacgaa ttgcaaaaca tgggggccaa 2281 attcaattcc gtctattttc atcctaagac attcgagtgt gcgactgtag ctgcgggctc 2341 agtgctgcag gtggttgaca aagttgttaa gggagaagct agaagtggtg tttgcattgt 2401 tagaccccca ggccatcatg cagaatcaga tgttccgcat ggcttttgca tattcaataa 2461 tgtggcaatt gccgcccagt atgccatcaa tgaccatggc ttaaacaggg tgttaattgt 2521 cgactgggat gtgcatcatg gtaatggtac tcagcatata tttgaatcca atccccaggt 2581 actttacata agtgtgcatc ggtatgacaa tgcaacattt tttccaaaaa gtaaagatgg 2641 tgattatgat tcggtgggta aaggtgctgg ggttggtttc aatgtgaaca ttccctggaa 2701 caagaaaggg atgggcgatt tggaatatat catggctttc cagcatatta tcatgccaat 2761 tgcttatgaa tttgatcctc aattggtctt ggtatcagct ggatttgatg ctgccatagg 2821 tgaccccctt ggtggctgta aagtaacacc cgaagcttat ggtttattca cacactggct 2881 atcggctttg gctaatggcc gcatcatagt ttgccttgag ggtggctaca atgtcaattc 2941 catatcgtat gccatgacaa tgtgcaccaa atccttgttg ggtgatccca taccatcagt 3001 gcaattaaac ggcagtctta tgcgtccgcc cacagtagcc tatctcagct gcatggaaac 3061 cttgcaaaat tgcattggag ttcaacatcg ctattggaaa agtctaacct ttggcaaacg 3121 gctgccacag gtgtcgggag aaaataacaa tgaggatttt ctttctgcta ctttacaaaa 3181 tttagatatt acaagggatg acgttcaagg agcagctggt ggttccggcg actccggtca 3241 gaatatatct ttagaggcaa gtggcagcaa accgaaggta aaagtcaaaa ctctaaccga 3301 atatctcaca gagcacatgc aggcttttga aaataatgaa atgtttgctg tggtgccatt 3361 aaagaattgt cctcatttgt cccagttgca tcccgaagat gcgccaaaat caataaatac 3421 gagtctacca tgtaatgaat gttcctcgac agctgaaaac tggatgtgcc tcagctgtca 3481 taaggtgttg tgcggtcgtt atgttatgga gcatatgatg ttccacaata ttgaaacatc 3541 ccatccgctg gctctaagct ttagtgattt atccgtctgg tgttatccct gcgaatcata 3601 tattgataat agcaaattac acatttacaa aaatctggca catttgcata agtttggtga 3661 ggaaatgcaa tgggcctatg atgatgatag tcattcaaac cacagacatc caaataatgg 3721 tagtgacagc gacgacgatg atgaggatga tgagaataac catcaagcag gttgcaacag 3781 agcatttgga acgcaacaaa atagttatta catacaattg aatacggata cgaataactg 3841 acatttgctt actgtactgg tcgagacagt acagaatcat ttgtgccttt tgtttccgtc 3901 tctgcgacca gtttttcaat ttcttctaca gtacatatgc cccttggtgc aacgcctatg 3961 tgcaaatata ttgcactact ttatggcgaa ttgataataa gacattatag taacgtttta 4021 aatgaatttg actataatat ccttttttta catgtaaggt ccctgactag caaattaagt 4081 atgtagttgt ttgctaacaa caaaacctaa ctaataataa tattaatagt aataccaata 4141 attataataa ctgttatatt gtaaatctat atgtttctgt tatactgcat tttccctcct 4201 ctgaacaatg aaggctttgt aaattttccc tgttgaatta gtattattgg attaaaattg 4261 gactcctctt tctaactaaa attttaaaaa tcaaacagaa ttatatattt ttttcttaat 4321 tttattttaa ttttttttta aattgttgtt ttatttcaat ctaacgacta ctgacaacat 4381 aatttagatg gatccaatta ggtaatataa aaatatatag tagtaactaa tatcatgatt 4441 ttaatcgtgt agttcgaatg taaattaata taacgtaaac aaaattagca ttaatcactt 4501 ccatacacat ctaaatgcgt acattcatac ccacccctca atttaactga ccataacata 4561 taagaataca tatatttttt aagttaaaat attatctact atgattgatg aaatgtaaaa 4621 ttatattgtt tttttttttt ttgttaacat aaaacaaaca aaaccgaagc attagcatta 4681 tattgtatat ggacgaataa acaaatcatt acatgtccta atcgaaaa