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LOCUS XM_013252654 3276 bp mRNA linear INV 02-SEP-2023 corkscrew (LOC106087566), transcript variant X3, mRNA. ACCESSION XM_013252654 VERSION XM_013252654.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252654.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3276 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3276 /gene="LOC106087566" /note="tyrosine-protein phosphatase corkscrew; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins" /db_xref="GeneID:106087566" CDS 128..2680 /gene="LOC106087566" /codon_start=1 /product="tyrosine-protein phosphatase corkscrew isoform X3" /protein_id="XP_013108108.1" /db_xref="GeneID:106087566" /translation="MSSRRWFHPTISGIEAENLLLEHGFDGSFLARLSSSNPGAFTLS VRRGLEVTHIKIQNNGDFFDLYGGEKFATLPELVQYYMENGELKEKNGQVIELKQPLI CAEPTTERWFHGNLSGKEGEKLLLERGKNGSFLVRESQSKPGDFVLSVRTDEKVTHVM IRWQDNKYDVGGGEPFKTLSELIEHYKRNPMVETCGTVVHLRQPFNATRITAAGINAR VEQLVKGGFWEEFEALQQDSRDMFSRIEGYKAENRNKNRYRNILPYDHTRVKLNDVDH SISGAEYINANYIRLPTDGEQNNMNASQESLNAMVPSCPACTAAQIQKNCPNCQLLNK TCVQCAVKTATLPYSNCATCNKKADNLNKHKRSESLTNNALIANCNGLSLQQQQQRTG GVAGTSAANGGSSGSGVIGSSRPLNKKNSNDLTEREMFKTYIATQGCLSNTVADFWNM IWQENTRVIVMTTKEFERGKNKCAKYWPDEGQTKQFGPAKIQCISESSTSDYTLREFL FSWRDQPERRIFHYHFQVWPDHGVPADPGCVLNFLQDVNAKQGQIIHSGDKPGPICVH CSAGIGRTGTFIVIDMILDQIDKNGLDTEIDIQRTIQMVRAQRSGLVQTEAQYKFVYY AVQHYIQTVIQRKRAEEQSIQVGREYTNIKYTGEIGNEAQRSPLPPIVSLASKQQQQQ QQANASATSCSNNSSSSISNAADNNQASKSNFIKMPLASPTTPSSRHKFTQAPSTQPQ PIYSNDIFQITQKHIEAHHNASQNHHHHHGPQQSPQMVVGHQQTQAQQLVHQHTQQAS SSSSSSSSAAAGLAGATTASSAGTGKQVSSRPGLLKLLTPVIFQPTKTFPKT" misc_feature 140..433 /gene="LOC106087566" /note="N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_N-SH2_SHP_like; cd10340" /db_xref="CDD:198203" misc_feature order(164..166,221..223,284..286,290..292) /gene="LOC106087566" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198203" misc_feature order(281..289,329..331,386..397,401..403) /gene="LOC106087566" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198203" misc_feature 455..748 /gene="LOC106087566" /note="C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins; Region: SH2_C-SH2_SHP_like; cd09931" /db_xref="CDD:198185" misc_feature order(539..541,545..547,560..565) /gene="LOC106087566" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature order(602..604,683..685) /gene="LOC106087566" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198185" misc_feature 881..2023 /gene="LOC106087566" /note="catalytic domain of tyrosine-protein phosphatase non-receptor type 11 and type 6; Region: PTPc-N11_6; cd14544" /db_xref="CDD:350392" misc_feature <2312..2515 /gene="LOC106087566" /note="N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins; Region: KLF1_2_4_N; cl41729" /db_xref="CDD:425360" polyA_site 3276 /gene="LOC106087566" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caacactggt ctggataacg tcgcagtcga gaaatttggg ttgctggtta ataaaaaata 61 taaataaaag ttaaataatt tacaaatacc gattgtttga ttgttctttc caaatacaac 121 gaagaaaatg tcatcgcgaa gatggtttca tcccacaata tcgggcatag aagctgaaaa 181 tttactgctg gagcatggct ttgatggatc ctttttggct cggctctcct cttccaatcc 241 cggtgcattt actttatctg tacgaagggg tctagaagtg acacacatta aaatacaaaa 301 caacggtgac tttttcgatc tctatggagg tgaaaaattt gctacgctac ctgagttggt 361 acaatattac atggaaaatg gtgaattgaa agagaaaaat ggtcaggtga tagaattgaa 421 acagccactg atatgtgctg aaccaacaac agaaagatgg tttcacggca atctttctgg 481 caaagaaggt gaaaaattgt tattggaacg tggaaagaat ggttcatttc tggtgcgtga 541 atcacaatcg aaaccaggcg attttgtttt atccgtaagg acggacgaaa aagttactca 601 tgtcatgata cgttggcagg ataacaaata cgatgttggc ggaggtgaac cattcaagac 661 tctatccgaa ttaattgaac actacaaacg taatccaatg gtggagacct gtggtacggt 721 tgtccatctg cgacagccat ttaatgctac acgcatcact gcagctggca tcaatgcccg 781 agtggagcaa ttggttaagg gtggcttttg ggaagaattt gaagctttac aacaagacag 841 tcgtgatatg ttctctcgca ttgaaggcta caaagcggag aatcgcaata aaaatcgtta 901 tagaaacatt ttaccatatg atcacacccg tgtcaaatta aatgatgtcg atcacagcat 961 atcgggcgct gaatatatca atgccaatta tatacgctta cccaccgatg gtgaacagaa 1021 caacatgaat gcttcacaag aaagcctaaa cgccatggtt ccctcctgtc cggcctgtac 1081 agctgctcaa attcaaaaga attgtcccaa ctgccagttg ttgaacaaaa cctgtgtcca 1141 gtgtgcggtg aagacagcaa cgctgcccta tagcaattgt gctacatgca acaaaaaggc 1201 cgacaatttg aataagcaca aacgcagtga atcattaacc aataatgctt taattgccaa 1261 ttgcaatggc ttatccctgc agcagcaaca acaacgtacg ggaggagtag ctggaacatc 1321 ggctgccaat ggtggcagta gtggtagcgg tgtcattggt tcttcacgtc ccctcaacaa 1381 aaagaacagc aatgatctga cggaacgtga aatgttcaaa acctacatag ccacccaggg 1441 ttgtttgtcc aatacggtgg cagatttctg gaatatgata tggcaggaga atacacgtgt 1501 cattgtgatg acaaccaaag aatttgaacg tggcaaaaat aaatgtgcca aatattggcc 1561 cgacgaggga caaaccaaac aattcggacc tgccaaaatt caatgtatct cagagagttc 1621 cacaagtgat tatacgctaa gggaattcct gttctcatgg cgtgaccagc cagagcgacg 1681 tatattccat tatcattttc aagtgtggcc cgatcatggg gtgcctgcgg atcctggatg 1741 tgtattgaat ttcttgcaag atgtcaatgc caaacaggga cagataatac attcgggtga 1801 taagccgggt cccatatgtg tacattgttc tgcaggcatt ggtcgtactg gcacttttat 1861 agtgattgat atgattttgg atcaaattga taagaatggt ttggatactg aaatcgatat 1921 tcaacgcaca atacaaatgg tacgagccca acgttctggt ctagtacaaa ctgaggccca 1981 gtataaattc gtttattatg ctgtccaaca ttacatacaa acggtgatac aacgcaaaag 2041 ggccgaggaa caaagtatac aagttggacg ggaatatacc aatataaaat ataccggtga 2101 aattggtaat gaagcacaaa gatctccctt accacctatt gtaagtttag ctagtaaaca 2161 gcagcaacaa cagcagcagg ccaatgcctc agcaacaagt tgtagcaata atagtagtag 2221 cagcattagt aatgctgccg acaacaatca agcatcgaaa tcaaatttta ttaaaatgcc 2281 cttggcatca cccacaacac caagcagccg tcataaattt acgcaggcac catcgacaca 2341 gccacagccg atctatagca acgacatatt tcaaataaca caaaaacaca tcgaagccca 2401 tcataatgca agccaaaatc atcatcatca tcatggtcca caacagtcgc cccaaatggt 2461 ggtggggcat cagcaaacac aagctcagca attggtacac cagcatacac aacaagcctc 2521 gtcgtcatca tcatcctcat catcagcagc agcaggatta gcaggagcaa cgacggcgtc 2581 gtcggcgggt acaggtaagc aggtctcgtc acgacccggt ttgctcaaat tgttgactcc 2641 cgtcattttt cagcctacga aaacttttcc aaagacatga tgaggcatca ttttgcggtg 2701 cctcccccta caccgcctcg taaaacatga caattaaagt tttaatgcta ttttctttgt 2761 aaaatttgat tgatttcctc aaaaaactac ctacatactc cttggaaagt aaactctctc 2821 tcctcttgta ggctttcccc ccaaaaaacc tgctaacaaa tcaaaaacaa accagaaacc 2881 tattgcatat tgtattttta atgaggaaaa caattttccg ccacttgaat tgattgattg 2941 agtgttgtgt ctaattttaa aattttgcaa agtaatctac gtttcttgtt ttcatatgcg 3001 gcggtagtag catttttttg ttagaattta aaagaaaaaa acacacctaa ttctgcctcc 3061 ccctactgct gggtaatgca aacttttttg ttttgccagc ttcttttgtt gagataagaa 3121 atctttgaca catagagaga ctttataagt tttatttttt taagttaaca tttgcataac 3181 tatttctttt gatataaggc gaattcgttt tctgcttcat tgtgatattc ccaataattt 3241 ttgttttata atttaatatg aaaaaaaaaa acaaaa