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LOCUS XM_013252509 1397 bp mRNA linear INV 02-SEP-2023 (LOC106087456), mRNA. ACCESSION XM_013252509 VERSION XM_013252509.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252509.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1397 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1397 /gene="LOC106087456" /note="TNF receptor-associated factor 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106087456" CDS 102..1370 /gene="LOC106087456" /codon_start=1 /product="TNF receptor-associated factor 6" /protein_id="XP_013107963.1" /db_xref="GeneID:106087456" /translation="MSMHDEKRRQATQSEDDDMELIPRPQPPQRSQQRLNSSSVNSRT SSTEETEPDSRYECAICMNWLNEPVLTKCGHLFCKSCLNSWLRNKSQWCPMDNKKITE NDIFPDNFTKREIEQIQLKCPNTKLGCDYIASPLEMERHKHNCPYRSDEEPTEEKCPF ASIKCEFVGRPETNALEMHLKEDMPHHLQLMLRSLQNTAISTWNPQKPQKSAAQTNGH SGLPPPPQYANGAEEQLIQAMYQRIVVLEQRACEQDVKIENLTKQISSLRTQVDPRYS CGTILWEIQNFHKLVEHLRSNTSNLVYSRECYTSPYGYKFCARLNIQPKNLQMLSLHV HLMQSENDGHLEWPFIGRIKLCMVHRDMKLSQHDTIMTKPEILAFHQPRERISTRGFG FVEYANIADIIKRGYCENDRLVIKIQINMV" misc_feature 264..437 /gene="LOC106087456" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(273..275,282..284,318..320,324..326,333..335, 342..344,378..380,387..389) /gene="LOC106087456" /note="cross-brace motif; other site" /db_xref="CDD:438111" misc_feature 444..>650 /gene="LOC106087456" /note="Seven in absentia protein family; Region: Sina; pfam03145" /db_xref="CDD:460824" misc_feature 933..1361 /gene="LOC106087456" /note="MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane...; Region: MATH; cl02446" /db_xref="CDD:445786" misc_feature order(1098..1100,1269..1277) /gene="LOC106087456" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238068" polyA_site 1397 /gene="LOC106087456" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cacacataga ttttgttttt tacatttgca ttaaattaag ttttcaagtt ttccatttta 61 tttgatataa aaaagcaagt taaaggagtg taatttaaga catgagcatg cacgatgaaa 121 aacggcgaca agcaacccaa tctgaagacg atgacatgga attgatacct agaccacagc 181 caccacagag atctcaacag aggctgaatt cgtcgtctgt gaattcgcgt acgagttcaa 241 cggaggaaac cgaaccagac tccaggtatg agtgtgccat atgcatgaac tggttgaatg 301 aacctgtgct gaccaaatgc ggccatttgt tttgtaaatc ttgcctcaac tcatggctgc 361 gcaacaaaag tcaatggtgt cccatggaca ataagaaaat taccgagaac gatatattcc 421 cggacaactt caccaaacgc gaaatcgaac agatacaatt gaagtgtccc aatacaaaat 481 tgggttgcga ttacatagct tcgccgctgg aaatggaacg acataagcac aattgtcctt 541 atcgcagcga tgaggagccc acagaggaaa agtgcccatt tgccagtatc aaatgtgaat 601 ttgtgggtcg acccgaaaca aatgccttgg aaatgcatct aaaagaggat atgccacatc 661 atttacagct catgcttaga tcgttgcaga acacggccat atcaacttgg aatcctcaaa 721 agccacaaaa gtcagctgct caaacaaatg gtcatagtgg tctgccgccg ccaccccaat 781 acgccaatgg agctgaggag caattgatac aggccatgta ccaacgcata gtggtcttgg 841 aacagagggc ctgcgaacaa gatgtcaaaa tagagaatct aacaaagcaa atatcctcgc 901 tgagaacgca agtggatccg cgttacagtt gtggcaccat tctctgggag atacaaaatt 961 tccacaaact cgtggaacat ttgcgttcca acacctccaa tttggtgtat tcccgtgaat 1021 gttatacctc gccgtatggc tataagtttt gcgcacgtct caatatacag cccaaaaatc 1081 tgcaaatgct cagtttgcat gtccacctta tgcagtcaga gaatgatggc cacttggagt 1141 ggcctttcat aggacgtatt aaactgtgta tggtgcatcg cgatatgaaa ctttcgcagc 1201 acgataccat aatgaccaaa ccggagattt tggcctttca tcagcccagg gaacgcataa 1261 gcactcgagg ttttggcttt gtggaatatg ccaatattgc cgacatcata aagaggggat 1321 attgtgaaaa cgatcgtttg gttataaaaa tacaaataaa tatggtgtaa gttacacata 1381 ctcataaaga catgtaa