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LOCUS XM_013252473 5745 bp mRNA linear INV 02-SEP-2023 TFIID subunit 3 (LOC106087434), transcript variant X1, mRNA. ACCESSION XM_013252473 VERSION XM_013252473.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013252473.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5745 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5745 /gene="LOC106087434" /note="transcription initiation factor TFIID subunit 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:106087434" CDS 193..5568 /gene="LOC106087434" /codon_start=1 /product="transcription initiation factor TFIID subunit 3 isoform X1" /protein_id="XP_013107927.2" /db_xref="GeneID:106087434" /translation="MTDQYMKDVLRVAVAQICQTIGYNATQSAPLELLQDVLDKFMRE FTRDLRRQVEHYNRTEANMDDVTLTLNSINVNVSELLDYVNNVEPVPFATEIPKFPAR KNSYLNFLKPGSKEVLTRPVHVHDHLPPMLPPEISQPLDPILPSTSNGLSTSDIKPNT ENGATDGVARAHNSESGAGTSSASILDKNTLQSLFKPSSNFDDADRPTREVSSVVMTT GGYISPAVEGKMPEAIVPDIIDKLMGFDAPPPPTPPPPPPPLPAPAPPVSRPVSRSSN TTPAPMVDLIKTEESDKDKNLTQSSNKESKKSSTTKALDFNVTNRKIDVTSAEMSGKK DKLLNHNQLPNPINPTGTKPPKLNKKKQATLMQNSLSAGIHHNNPNNYANMLLKKAKK QKQPLLSGQPLSEKHTQEKPGKLDPAEKTQRKYIKMLQKMAKQGKIPAELLSAIMGSD KKSKILNPQILQVLPPGPERIQLEKLLKKYGKQRQKQIKQQMMMEAQKHKKSLMQTAP PPLVPLFTPIAPTKEALVKPPLVVDLEEQKPKIIEQKDANCALSPVKTGFMPSMAISP GQQPPHLVEAIINKNLKTPVMTDTLVLGDSATLTPVPLLTGDGKELKLSNEPDRSKLN IFKKISKQKTPKSSSPTPLPLRMPTGLSDTPIINLPSGTTITPAPGPGPALGTSTSVG RSLFPPLPDSGANNIINLDDIKDPPPSLNVPNQPPTDLSMLNRVFGEKPPGGEAADMA NKPKKRGRKPGSKNSPKIPGAIPASLLKKNKKMKLDPKLFPTQMPIPPDIATAVGAGN LSFDNVAQFFNNPPINPMEWSQNKQLQQQMLIMAAAKERKEQKKKNKIMKQDILSNEK NMMMPMPTNMSMGVVPTNEEVQNINKKLMRMDTILKPAPSTSGGNELSVDTSLITGKK LPSPSLSQFPQTSTSPLKSPAGQAASKRLMQGMEAMAAAAAAGLGQPFMLPNRPAFPN LPSSMLSILPFPFTARPGLIPTPSLFPTPGLGAFQSNPKNPLLAGMFPFPNLKQQTSL DTSSQETSEDLSMGNKKKVADSLERNYCNVAPLVPEFLKLNTPELNKVSTELHGEHDL TKTPKSRNSLSIAAPQDNILKKIVEAHTSENSLSHSTKSMPSAPGGMSINTFEQLMKK NDSPIDLASLSKPMKRPPLTQDTGLDFSMNKKHHPTPGLKQPPITLNNEPIEVSDDSD EMSQPPPPPLKTPLPLPIVEPTPVPAPTPTITQPNINIDEIFVANAAANKPPPTLSLE SDLSSKELKKLKKQVKKTSASITSTLINPEKPEGVSKLAGGADLIPLTSTGLAYSSKN IPFNSLTANANPTFTHKPPSEFNTTSSSVFDNVTITAAMPTSATLSASTNIFDMQKKR KEHKKIKKELKEGKIKKKKDKKDKSKSKEKAERYLQSQETSPSKEKLEPIGAETPPSI NVVTDVAGGISGVDKVKDKDLIKKLKKEKKKEKQRSAMEETSTVIAQAPLQISTSSLP EVERKQKSSPSVVVNASSNNEVDSFVATAPSTATPSASVVPKLTLKLGSTQSPTPIDD LHKTSSSSSAATATATTHTVSKSPPRDNQREPSPELARISPLVTRPPKQKVNPGGDLI TGPSSATNSLSTASAGPLDTFGDVSKPSSTSNINMIVPPPNPWLSGGTISASSVLLPH QLLQTTKHDMVTASGSSNQSTDVTKAHTSADRQSPLTLITETSRPSSYIDAEGNRVWI CPACGKVDDGSPMIGCDGCDAWYHWVCVGIYVAPKDNEDWFCRVCITRKKGLHGSDKK RKRNKKK" polyA_site 5745 /gene="LOC106087434" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttttataca caaaatccaa aatcgcataa taataatata tgtcaaaaaa agagcttaat 61 attcgtagaa aaccaaaaaa ctaaaaaact tagtacccta aagtgatcat aaaagaatat 121 gtcaaaacct gccacaaata tctctcaata aaaataatcg acttaataga gataagtaag 181 tgaaaaagaa aaatgactga tcaatacatg aaagatgttt tgcgtgtggc tgtggcacaa 241 atatgtcaga caattgggta caatgcaaca cagtcggcac ctttggaact tctgcaggat 301 gtattggata agtttatgag ggagtttact cgtgacctca ggcgacaggt tgagcactat 361 aatcgcaccg aagccaatat ggatgatgtg acattgacat tgaatagtat taatgtgaat 421 gtaagcgagt tattggacta tgtgaacaat gtggaaccgg ttccctttgc cacagagata 481 ccaaaatttc ctgcccgcaa aaattcatat ttgaattttc ttaaacctgg aagcaaagaa 541 gtgttgacga gacctgtgca tgtgcatgat catttgcctc ctatgctgcc tccagagatt 601 tcccagcctc tggaccctat cctaccatca acttcgaatg ggttgtcgac gtccgatata 661 aagccgaata ctgaaaacgg tgcaacagat ggcgttgcca gggctcataa tagtgaatct 721 ggagcgggaa cgtcttctgc aagtattctg gacaaaaata ccctgcaatc ccttttcaag 781 cccagctcta attttgatga tgcagatagg cctacgagag aagtaagtag tgttgtcatg 841 acaactggtg gttacatatc acctgcagtt gagggaaaaa tgccggaagc cattgtgcca 901 gatattattg ataagttaat gggatttgat gcaccccctc cgccaacgcc accacctccc 961 cctccaccat taccagcacc tgcaccacct gtttcaagac cggtttcgcg ctcttcgaat 1021 actacaccag ctcccatggt tgatttgata aaaactgagg aatctgataa ggataaaaat 1081 ttgacacaat cttccaataa agagtctaaa aaatcttcga ccaccaaagc cctagatttt 1141 aatgtgacaa acagaaagat agatgttaca tctgctgaaa tgtctggtaa aaaggataaa 1201 ttacttaatc ataatcagtt gcccaatccc ataaatccga ctggcacaaa gcctccaaag 1261 ctaaacaaaa agaaacaagc cacattaatg caaaacagtt tatcagctgg catacatcac 1321 aacaatccaa acaactatgc gaacatgctt ctaaaaaaag ccaagaaaca aaaacagcct 1381 cttctgtcgg gtcagccact ttcggagaaa cacacacaag aaaaacctgg caaattggac 1441 ccagcagaaa agacacagag aaaatatata aaaatgttgc agaaaatggc aaagcaagga 1501 aaaattccag ccgaattgct aagcgccatt atgggatcgg ataaaaaatc gaaaattttg 1561 aatcctcaaa ttttacaagt tttacctcca ggcccggaaa gaatacaatt ggaaaagttg 1621 cttaaaaaat atggtaaaca aaggcagaag caaataaaac agcaaatgat gatggaagct 1681 caaaaacata agaagtcgct tatgcaaaca gccccaccgc cattagttcc acttttcacc 1741 ccgattgcgc ctactaaaga agcattggtc aagccgcctt tggtagtaga tttagaagaa 1801 cagaagccta aaattattga acaaaaggat gcaaattgtg ctttatcccc agtgaagaca 1861 ggatttatgc caagtatggc gatttcgcca ggtcaacaac caccgcattt ggtggaggca 1921 ataattaaca agaacctgaa aacaccagtt atgaccgata ctcttgtatt gggtgactct 1981 gctacactga cgccagtgcc tcttctaacg ggagatggaa aagagctgaa attgtcaaac 2041 gaaccggacc gtagtaagtt aaacattttc aaaaagattt cgaagcagaa aactccaaaa 2101 tcttcatccc ccacaccgtt gccgttgcgt atgccaacag gattatcaga tacgccaata 2161 attaatttgc cttctggcac tactataacg ccagcaccag gtcctggacc tgctttgggc 2221 acttccacgt cggtagggcg gtctttgttt ccacccttac cagatagtgg agcgaacaac 2281 attataaatt tagatgatat caaagaccct ccgcccagtt taaatgtacc taatcaacca 2341 ccaacagact tgagcatgtt gaacagagtg ttcggagaaa aacctccggg gggcgaagct 2401 gctgatatgg ccaacaaacc caaaaagagg ggtcgtaaac ctggcagtaa aaatagccca 2461 aaaattccgg gagctatacc tgcgagtttg cttaagaaaa ataagaagat gaagttggac 2521 cctaaacttt tcccaacgca aatgcctata cctcccgata ttgcgacggc ggtcggagcg 2581 ggcaacttga gtttcgataa cgtagcccaa ttctttaata atcctcccat caatcccatg 2641 gaatggtccc agaataaaca gctgcagcaa cagatgctta ttatggccgc cgcaaaggag 2701 agaaaggaac aaaagaaaaa gaacaaaatt atgaagcaag acatacttag taacgagaaa 2761 aatatgatga tgccaatgcc aacaaatatg tctatgggtg tagtgccgac aaacgaggaa 2821 gtgcaaaata tcaataaaaa gttaatgcgt atggatacca tacttaagcc tgctccttca 2881 acaagtggtg gtaacgagtt gtcggttgat accagtctaa taactggtaa aaagttacca 2941 tcaccatccc tatcccaatt tccgcaaact tctacatcac ctttaaagtc gccagctggt 3001 caggcagcct cgaaacgtct gatgcaaggc atggaagcta tggctgctgc agcggccgct 3061 ggtctcggac aaccctttat gctgcctaat cgtccggctt ttcctaattt acccagcagt 3121 atgctgtcta tactaccttt tccgtttaca gctcgaccag gtcttattcc aacccccagt 3181 ctctttccaa cccccggcct gggagcattt cagagcaacc ctaagaatcc tctactagcg 3241 ggaatgtttc catttccaaa tttaaagcag caaacttcac ttgatactag ctcacaagaa 3301 acaagtgaag atttatcgat gggaaacaaa aagaaagttg cagattcctt ggagaggaat 3361 tattgtaacg tagcaccatt ggtaccagaa tttctgaaac tgaatacacc agaactaaat 3421 aaagtttcca cagaactcca tggtgaacac gatttgacta aaactccaaa gtcgcgtaat 3481 tcgcttagta tagcagcacc tcaggacaat attcttaaga aaatagtgga ggcccataca 3541 tccgaaaata gtctaagcca cagcacaaaa tctatgccat ctgcaccggg tggaatgtcg 3601 ataaatacat ttgagcagct gatgaaaaag aatgacagtc ccattgattt agcctctctt 3661 agtaaaccaa tgaaaaggcc accgctaact caagatacag gtttggattt ctccatgaat 3721 aaaaaacacc acccaacacc tggcctaaaa cagccaccaa taacattaaa caatgaaccc 3781 atagaagtgt cggacgattc tgatgaaatg agccaaccac caccgccgcc attgaaaact 3841 ccactcccat tacctattgt ggaaccaaca ccagtaccgg cgccaactcc cacaataaca 3901 cagccaaaca ttaatattga tgaaatattt gtggctaatg cagctgccaa taaaccaccg 3961 ccaacattat cactagaatc cgatttatcc tcaaaagagc tcaaaaagct caaaaaacaa 4021 gttaagaaga catcggccag cataacaagt actttaataa acccagagaa acctgagggt 4081 gtcagtaaac tagcgggagg ggccgatttg ataccactta cttcaacagg attggcttac 4141 tcctcaaaaa atattccatt caatagtttg actgctaatg ccaatcccac atttacacac 4201 aaacccccat cagagtttaa cacgacgtcc tcctctgttt ttgacaacgt tacaattact 4261 gcggccatgc caacatctgc aacattatct gcatccacaa atatttttga catgcaaaaa 4321 aaacgaaagg aacacaaaaa gattaagaag gaattaaagg agggaaaaat caaaaagaaa 4381 aaggataaaa aagataaatc gaagagcaaa gagaaggctg agaggtattt acaatcgcaa 4441 gaaacatcgc catctaaaga gaaattggaa ccgattggcg ctgaaactcc tccaagtatt 4501 aatgtcgtta cagacgtcgc tggtggcatc agtggcgttg ataaagtaaa agataaagat 4561 ctaataaaga aactaaagaa ggaaaagaaa aaagaaaaac aacgttccgc catggaagaa 4621 acgtccacag ttatagctca agcgcctttg caaatttcaa cgagttcgtt gcctgaagtt 4681 gagagaaaac aaaaatcctc accttccgta gtcgtaaatg cttcgtcaaa caatgaggtg 4741 gacagcttcg tggcaactgc tccttcaact gctactccaa gtgcatcggt tgtgccgaaa 4801 ttaactttga aattgggttc tacccagtcc cctacgccga tagatgattt gcacaaaact 4861 tcaagtagca gtagtgctgc tacagcgact gcgacgacac acacagtatc aaaatcacca 4921 ccgcgcgata accaacgaga accttctcca gagttggcta gaatatctcc tctcgttacc 4981 cgaccaccaa aacagaaagt taatccagga ggtgatttaa taactggacc aagttccgct 5041 acaaacagtc tttccaccgc cagtgccgga ccattggaca catttgggga tgttagcaag 5101 cctagttcaa cttcgaatat aaacatgata gtgccaccac caaatccttg gctctcgggc 5161 ggtacaatat cggctagttc ggtattgctg ccgcaccagc tcttgcaaac cacgaagcat 5221 gacatggtta cagcttcagg cagttctaat caaagcacag atgttacaaa agcgcatact 5281 tctgccgata ggcaaagtcc tttaactcta ataactgaga ccagcagacc ctcctcatat 5341 atcgatgctg agggaaatcg agtttggatt tgtccagcct gtggcaaggt agacgatggc 5401 tcccctatga taggttgtga cggttgtgat gcctggtatc attgggtgtg tgtgggcata 5461 tatgtggcgc ccaaagataa tgaagactgg ttttgtcgcg tttgtataac tcgtaagaaa 5521 ggactgcatg gatcggataa aaaacgtaaa cgtaataaaa agaagtaatt ttaagaactt 5581 gacatgattt atacatatac ataatatatt agatttaaga catgttgtat aattttccta 5641 ttaatacgtt catataccat aagtatataa aatccaatag ttttatatat attaaaaccc 5701 aaacataatt actgtaataa aataaaaaca ataaattcat aataa