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LOCUS XM_013251011 2456 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013251011 VERSION XM_013251011.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013251011.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2456 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2456 /gene="LOC106086368" /note="sorting nexin-27; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106086368" CDS 59..1411 /gene="LOC106086368" /codon_start=1 /product="sorting nexin-27 isoform X2" /protein_id="XP_013106465.1" /db_xref="GeneID:106086368" /translation="MLPFNYVQFSAVTQGRHFREFEQRSLRRNGISVEGATHKQVVDL IKSGGDCLTLTVISVTQQEAERLEPQEDQSGYSYIDYSDKRSLPISIPDYSIINRNGE RYIVFNIHMAGRQLCSRRYREFANLHSILRKEFTGFNFPKLPGKWPFQLSEQQLDTRR RGLEQYLEKVCAVRVIAESDAVQDFLTDSEDDISASPVDIKVMLPDHEVTTVSVKKSA NAHVVWEILVQRANFTSYTQQYFYLFEIVEYNFERKLQPHEIPHQLYVQNYSTASSTC LCVRRWLFSVSRELTLPQGEQAAKFIFYQSVDEVNRGNIRAEGRLYELKALQDAKKAP EYLALARTLPGYGDVVFPHCACDSRKEGHVVPAVGMKSFRLHACREDGSLEAQMVELT WDSITRWESDEESMSFCFQYNRPDKPARWVKVYTPYHAFLADCFDRIMEERKWEDAGD " misc_feature <128..232 /gene="LOC106086368" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature 308..625 /gene="LOC106086368" /note="The phosphoinositide binding Phox Homology domain of Sorting Nexin 27; Region: PX_SNX27; cd06886" /db_xref="CDD:132796" misc_feature order(416..424,491..496,533..535) /gene="LOC106086368" /note="phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:132796" misc_feature 644..919 /gene="LOC106086368" /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in sorting nexin protein 27 (SNX27); Region: FERM_F1_SNX27; cd01777" /db_xref="CDD:340475" misc_feature 1097..1399 /gene="LOC106086368" /note="Atypical FERM-like domain C-lobe of Sorting nexin 27; Region: FERM-like_C_SNX27; cd13338" /db_xref="CDD:270146" polyA_site 2456 /gene="LOC106086368" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgttgggttt ttaatttcaa cgaaacggaa ggagcaggaa atcccgttgg cggaggaaat 61 gttgcccttt aattacgtac agttttccgc tgtgacacag ggccgacact ttcgtgaatt 121 cgagcaaagg tcattaagaa gaaatggtat tagtgttgag ggtgccacac ataaacaagt 181 tgttgatctc attaaatctg gcggtgactg tttgacattg acggttatat cagtaacaca 241 gcaagaagcc gaaagacttg aacctcaaga agaccaaagt ggttattcat acatagacta 301 ttccgataaa agatcattgc caataagtat tcccgactat agcattatca atcgaaatgg 361 cgaacgttac attgttttca atattcacat ggccgggcgc cagctgtgct cgcgtcgcta 421 tcgtgaattc gccaatttac attcgatttt acgcaaagaa tttacaggct tcaatttccc 481 aaaactaccc ggtaaatggc cattccagtt gagtgaacaa cagctcgata cacgtcgccg 541 aggtctggaa caatatctgg agaaggtgtg tgcggtgcgt gtgattgcag agagcgatgc 601 tgtacaggat tttctcaccg attccgaaga tgatatatcc gcctcacctg ttgatattaa 661 agttatgctg cccgatcacg aagtcaccac ggtgtcggtg aaaaagtccg ccaatgccca 721 tgtcgtttgg gaaattctag tgcagcgtgc gaacttcacc tcatacacac agcaatattt 781 ttatttgttc gaaattgtcg aatacaattt tgagcgtaaa ctgcaacccc acgaaatacc 841 ccatcaattg tatgttcaaa actatagcac agcttccagt acttgtttgt gtgtgcgccg 901 atggttgttt tcggtgtcac gtgaactaac tctgccccaa ggggagcagg cggcgaaatt 961 tatcttctat caatccgtgg acgaagtcaa tcgtggcaat atacgggcgg aaggacgtct 1021 gtatgaattg aaggcactac aggatgccaa gaaagcacct gaatatttgg ctttggcacg 1081 taccctgcct ggctatggtg atgtagtctt tccgcattgt gcatgtgaca gtcgaaagga 1141 gggtcacgtt gtaccggctg tgggtatgaa aagttttcgc ttacatgctt gtcgtgaaga 1201 tggatctttg gaagctcaaa tggttgaact gacatgggat agcataacac gttgggagag 1261 tgatgaggaa tcaatgtcat tttgtttcca atacaatcgt cctgataagc ccgccagatg 1321 ggttaaagtc tatacgccct atcatgcatt cttggccgat tgttttgatc gcatcatgga 1381 ggaacgcaaa tgggaggatg ccggcgacta acagctgaaa cgttactaga tattaattct 1441 atgtgtaatt ctaaacttaa gattaaacaa atatacaaaa catcgcaaac aaagtggact 1501 ccttacacac acacacacat acatacatgc atttgagagc ataatctaaa catgtatgta 1561 acactttata ttttgtaaat taattccttc tctctctctc tctcacacac acacacacaa 1621 acactcacaa tctttctata actactacac gctcttaaaa caaacaaaaa aaagaaacct 1681 ttctatacaa acttgtattt agtttatatt tacacacatt cgtatatata caaaacaaaa 1741 aaaccaatat atatataaaa tattattaaa gttcgaacac aattgtaaaa aaaagtagca 1801 tgctaaatca aggcccaatt ccccttattc taagacaatg acaagggctt tgtttttgtt 1861 gtctctatct gacattgcat tgcatagtaa gcaaacaggg attgtgtcta atgataagga 1921 tgatattgat tgtttcgctt aagaattgct cttatatgat ttacaactgt ttcagatatt 1981 gtatgctatg cattattccc ttataagtta tatttatctc gacatacttc ctctttagtt 2041 atttctattt ctgatgaaat tttcgataaa ttatttataa atacttgcat atacaacaag 2101 ccatctatta ttcctatttt ttgttttcaa gtgacaattt aattggacca acatttttgt 2161 taaatgttta tgatattttc tacttttatt gtttttgttt aatatttttt tttttttgat 2221 ttattacacc ctcttatttt ttgttagtac ttataaagat atgaatataa tttatgtatt 2281 atttttgttt actatatttt agaaattttt gtataaaaaa atctacaacc tgcccttatc 2341 ccacacccca tactagattt ccttaaatgt aagcttctga aaagtgaatg aaacagaaaa 2401 gagagagata acaaatctca atattaaaat tattttactt atgcaaaata ttgaaa