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LOCUS XM_013251010 3311 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013251010 VERSION XM_013251010.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013251010.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3311 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3311 /gene="LOC106086368" /note="sorting nexin-27; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106086368" CDS 776..2266 /gene="LOC106086368" /codon_start=1 /product="sorting nexin-27 isoform X1" /protein_id="XP_013106464.1" /db_xref="GeneID:106086368" /translation="MGDSANTPAGPRVVTIFKTETGFGFNVRGQVSEGGQLRSINGEL YAPLQHVSAVLENGAAEKAGIKKGDRILEVNGISVEGATHKQVVDLIKSGGDCLTLTV ISVTQQEAERLEPQEDQSGYSYIDYSDKRSLPISIPDYSIINRNGERYIVFNIHMAGR QLCSRRYREFANLHSILRKEFTGFNFPKLPGKWPFQLSEQQLDTRRRGLEQYLEKVCA VRVIAESDAVQDFLTDSEDDISASPVDIKVMLPDHEVTTVSVKKSANAHVVWEILVQR ANFTSYTQQYFYLFEIVEYNFERKLQPHEIPHQLYVQNYSTASSTCLCVRRWLFSVSR ELTLPQGEQAAKFIFYQSVDEVNRGNIRAEGRLYELKALQDAKKAPEYLALARTLPGY GDVVFPHCACDSRKEGHVVPAVGMKSFRLHACREDGSLEAQMVELTWDSITRWESDEE SMSFCFQYNRPDKPARWVKVYTPYHAFLADCFDRIMEERKWEDAGD" misc_feature 809..1087 /gene="LOC106086368" /note="PDZ domain of sorting nexin-27 (SNX27), and related domains; Region: PDZ_SNX27-like; cd23070" /db_xref="CDD:467283" misc_feature order(839..859,929..931,938..940,1025..1027,1037..1039, 1046..1051) /gene="LOC106086368" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467283" misc_feature 1163..1480 /gene="LOC106086368" /note="The phosphoinositide binding Phox Homology domain of Sorting Nexin 27; Region: PX_SNX27; cd06886" /db_xref="CDD:132796" misc_feature order(1271..1279,1346..1351,1388..1390) /gene="LOC106086368" /note="phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:132796" misc_feature 1499..1774 /gene="LOC106086368" /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in sorting nexin protein 27 (SNX27); Region: FERM_F1_SNX27; cd01777" /db_xref="CDD:340475" misc_feature 1952..2254 /gene="LOC106086368" /note="Atypical FERM-like domain C-lobe of Sorting nexin 27; Region: FERM-like_C_SNX27; cd13338" /db_xref="CDD:270146" polyA_site 3311 /gene="LOC106086368" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acggacaagc aagtagacaa ctacattttc acaatttcgc ttaattcccc cctccatcat 61 acttaattat tttttaataa ttaattattg aataataata tgcagaaatt gatatacaac 121 aaaggaatcg ttgaaataaa tgaaaatggt caaataagtg aattaaacaa gtaaaagtaa 181 aaaatattaa agagagccac cacataaaat atccaagtca atgcaacaaa agatttgcca 241 aggagaaggg ggcaaacagg taataagaaa tacaagaaaa aattggaaaa gtggtcgctt 301 gccctgcctt ggcaagtgtt tttttttgtg taagttgcgg tgaatggtgg ctggcgatgg 361 tgtgcctcag tggtgttatt gtgctgtgag aagaagaatc aaattccgag caaaagcaag 421 tcaaaaggag ttacgcaaat ctcgtacaaa cacaaagaag ttgcgggcat tgtttgttac 481 aaaagctgca gcaaacaaca aaacaagagt gagataataa ttaaaaaaca ggaaaaagaa 541 aaaaaaaata aagaattcac tgcagtgggc cgctctctgc tgcaacagca acaaagggga 601 acaaattgcg gaggtaatca aaccagctag caactagcca acaagcgttt ggaagaattg 661 gaagccagtg gacgtcgcgt gcgattttgc gggctagttc tgtcagctct ggtcgtcgtg 721 gtgtgtttgc gtgcgtgcga gtgtttgtgt gtgggaataa aacaaaaaag tcgtcatggg 781 tgattcggcc aatacgcctg ctggaccccg ggttgtaacg attttcaaaa ctgaaacggg 841 cttcggcttt aacgtacgcg gtcaagtgtc cgagggcggt cagttacgtt ccattaatgg 901 cgagctatac gcccctctgc aacatgtcag tgcggtgctg gaaaatggag cagccgaaaa 961 ggcaggcatc aagaaaggcg atcgcatttt ggaagtaaat ggtattagtg ttgagggtgc 1021 cacacataaa caagttgttg atctcattaa atctggcggt gactgtttga cattgacggt 1081 tatatcagta acacagcaag aagccgaaag acttgaacct caagaagacc aaagtggtta 1141 ttcatacata gactattccg ataaaagatc attgccaata agtattcccg actatagcat 1201 tatcaatcga aatggcgaac gttacattgt tttcaatatt cacatggccg ggcgccagct 1261 gtgctcgcgt cgctatcgtg aattcgccaa tttacattcg attttacgca aagaatttac 1321 aggcttcaat ttcccaaaac tacccggtaa atggccattc cagttgagtg aacaacagct 1381 cgatacacgt cgccgaggtc tggaacaata tctggagaag gtgtgtgcgg tgcgtgtgat 1441 tgcagagagc gatgctgtac aggattttct caccgattcc gaagatgata tatccgcctc 1501 acctgttgat attaaagtta tgctgcccga tcacgaagtc accacggtgt cggtgaaaaa 1561 gtccgccaat gcccatgtcg tttgggaaat tctagtgcag cgtgcgaact tcacctcata 1621 cacacagcaa tatttttatt tgttcgaaat tgtcgaatac aattttgagc gtaaactgca 1681 accccacgaa ataccccatc aattgtatgt tcaaaactat agcacagctt ccagtacttg 1741 tttgtgtgtg cgccgatggt tgttttcggt gtcacgtgaa ctaactctgc cccaagggga 1801 gcaggcggcg aaatttatct tctatcaatc cgtggacgaa gtcaatcgtg gcaatatacg 1861 ggcggaagga cgtctgtatg aattgaaggc actacaggat gccaagaaag cacctgaata 1921 tttggctttg gcacgtaccc tgcctggcta tggtgatgta gtctttccgc attgtgcatg 1981 tgacagtcga aaggagggtc acgttgtacc ggctgtgggt atgaaaagtt ttcgcttaca 2041 tgcttgtcgt gaagatggat ctttggaagc tcaaatggtt gaactgacat gggatagcat 2101 aacacgttgg gagagtgatg aggaatcaat gtcattttgt ttccaataca atcgtcctga 2161 taagcccgcc agatgggtta aagtctatac gccctatcat gcattcttgg ccgattgttt 2221 tgatcgcatc atggaggaac gcaaatggga ggatgccggc gactaacagc tgaaacgtta 2281 ctagatatta attctatgtg taattctaaa cttaagatta aacaaatata caaaacatcg 2341 caaacaaagt ggactcctta cacacacaca cacatacata catgcatttg agagcataat 2401 ctaaacatgt atgtaacact ttatattttg taaattaatt ccttctctct ctctctctca 2461 cacacacaca cacaaacact cacaatcttt ctataactac tacacgctct taaaacaaac 2521 aaaaaaaaga aacctttcta tacaaacttg tatttagttt atatttacac acattcgtat 2581 atatacaaaa caaaaaaacc aatatatata taaaatatta ttaaagttcg aacacaattg 2641 taaaaaaaag tagcatgcta aatcaaggcc caattcccct tattctaaga caatgacaag 2701 ggctttgttt ttgttgtctc tatctgacat tgcattgcat agtaagcaaa cagggattgt 2761 gtctaatgat aaggatgata ttgattgttt cgcttaagaa ttgctcttat atgatttaca 2821 actgtttcag atattgtatg ctatgcatta ttcccttata agttatattt atctcgacat 2881 acttcctctt tagttatttc tatttctgat gaaattttcg ataaattatt tataaatact 2941 tgcatataca acaagccatc tattattcct attttttgtt ttcaagtgac aatttaattg 3001 gaccaacatt tttgttaaat gtttatgata ttttctactt ttattgtttt tgtttaatat 3061 tttttttttt ttgatttatt acaccctctt attttttgtt agtacttata aagatatgaa 3121 tataatttat gtattatttt tgtttactat attttagaaa tttttgtata aaaaaatcta 3181 caacctgccc ttatcccaca ccccatacta gatttcctta aatgtaagct tctgaaaagt 3241 gaatgaaaca gaaaagagag agataacaaa tctcaatatt aaaattattt tacttatgca 3301 aaatattgaa a