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LOCUS XM_013250916 2344 bp mRNA linear INV 02-SEP-2023 transporter 1 (LOC106086295), transcript variant X5, mRNA. ACCESSION XM_013250916 VERSION XM_013250916.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250916.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2344 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2344 /gene="LOC106086295" /note="sodium-dependent nutrient amino acid transporter 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins" /db_xref="GeneID:106086295" CDS 377..2251 /gene="LOC106086295" /codon_start=1 /product="sodium-dependent nutrient amino acid transporter 1 isoform X1" /protein_id="XP_013106370.1" /db_xref="GeneID:106086295" /translation="MDVKTNEDSGRVTTTVSIELSNNTNQKKTKDKDDNADDRPNWSN GLEFLMSCISMSVGLGNIWRFPFTAYENGGGAFLIPYLIVLFLIGKPMYYLEMIMGQF TSKGSVKAWSICPSFLGVGYGQAFGTLSIITYYSSLIALTLYYMIVSCQAILPWTYCR DEWENCVDSMPKEDTLQFPNDTSNKLTSSSELYFIEIVSKEKDQIDDGLGSPDLYLTL TLFASWIVIFLVIRNGVKSSGKAAYFLALFPYVVLIALLIRAVTLEGAVDGILFFLEP DWGQLANLKVWKEAVVQCFFSLAVGIGPIIMFSSYNRFDHPIYRDAMIVTSLDTLTSM LAGITIFGILGNLAHNLKVSDIKEVVQSGTALAFISYPDAIAKFQAVPQFFAVLFFFM LFVLGVGSIVALQSTIVTIICDQFKSTKYWVVALICSIGGFLLGLVYVTPGGQWILNL VDFYGGTYVVFALAILEIVGIIWIYGLQNFCDDVEFMTNRKVSIYWRLCWSFLTPVMM IVIFVYSMVTIEPLTYKKIEYPEAANIAGWVIFAIGIAQFPLWGWWYIKTHYKDSFMN TLRTSLRSSEEWGPKNPETRAKWIAYKEALALERGKKLSSNKFGFFKQKVYNISVGKN " misc_feature 497..1924 /gene="LOC106086295" /note="Solute carrier 6 family, neurotransmitter transporters; solute-binding domain; Region: SLC6sbd; cd10324" /db_xref="CDD:271359" misc_feature order(536..538,545..547,1562..1564,1571..1576) /gene="LOC106086295" /note="Na binding site 2 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(542..544,548..559,779..781,1262..1267,1280..1282, 1286..1288,1574..1576,1583..1588) /gene="LOC106086295" /note="substrate binding site 1 [chemical binding]; other site" /db_xref="CDD:271359" misc_feature order(542..544,557..559,1265..1267,1361..1363) /gene="LOC106086295" /note="Na binding site 1 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(563..568,776..778,788..790,797..799,1466..1468, 1478..1480) /gene="LOC106086295" /note="substrate binding site 2 [chemical binding]; other site" /db_xref="CDD:271359" polyA_site 2344 /gene="LOC106086295" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggctggttgg agtatacgct gcacgctttg cagctaccaa aactaagctt atttcgataa 61 tattttgccg caacggaaaa catttcagtt caatttattc aattgttaaa gttaggtcga 121 agcgatcggt agtgccgttg aaaccctcca acaactcgca tctgccctcg ccaatcggtt 181 gcgtgttcca agcgaagttt tgtgcgaggt gttcgaaaac cgtttcgtgt ttggatattt 241 gagtgttatc aaaactttta aatatgttta attatatagt cgattaattg caataaaaaa 301 cgtgttaact aaaacgcaaa aacgcacata gaataaaact aacatttgct gtaaaattgt 361 ggtgcttctg aaaaaaatgg atgttaaaac taatgaagac agcggccgag ttacaaccac 421 agtgtctatt gaactttcca ataacaccaa tcagaaaaag actaaagaca aggatgataa 481 cgccgatgat agacctaatt ggtcaaatgg tcttgaattt cttatgtcct gcatttcgat 541 gtctgttgga ttgggtaaca tttggcgctt tccctttacg gcctatgaga atggaggagg 601 agctttttta attccatatt tgatagtact tttcctcata ggcaaaccca tgtactatct 661 ggagatgatt atgggacaat ttacgagcaa aggctctgta aaagcatggt ctatatgtcc 721 atcgttttta ggtgtgggct atggtcaagc atttggcaca ttgtccatta taacgtacta 781 ttcatcttta attgctctga ctttgtacta tatgatcgta tcttgtcaag cgattctccc 841 ttggacatat tgtcgcgacg aatgggaaaa ttgtgtagat tcaatgccaa aagaagacac 901 attgcaattt cccaatgaca catcaaataa attgaccagc agttcggagt tgtactttat 961 tgaaattgta tcaaaggaaa aggatcaaat agatgacggc ctgggatctc ccgatttgta 1021 tttaacgttg acgttatttg catcatggat cgttattttt ctcgttatac gtaatggtgt 1081 taagagttcc ggaaaagctg catacttttt ggcgttattt ccctacgtag ttctcattgc 1141 tttattaata cgcgcggtaa ccttggaggg tgccgtggat gggattttat tctttttgga 1201 acctgactgg ggtcagttgg caaacttaaa ggtttggaag gaagctgttg tccagtgctt 1261 tttttctctg gcagttggca ttggcccgat aatcatgttt tcgtcctaca accgatttga 1321 tcatccaatt tacagagatg ccatgattgt taccagctta gatacgttga ccagtatgtt 1381 ggcgggtatt acaattttcg gaatattggg caatctggcg cataatctta aggtgtccga 1441 tataaaggag gtggttcaaa gtggcactgc attggcattt atatcgtatc cagatgctat 1501 tgcgaaattt caggctgttc ctcaattttt cgcagttctt ttcttcttca tgctgttcgt 1561 tttgggagtg ggctctattg tagctctgca gagcacaatt gtcaccatta tatgtgatca 1621 gttcaagtcc acgaaatatt gggttgttgc tttgatttgt tcaataggtg gatttctatt 1681 gggtttggtt tatgtgaccc caggtggcca gtggatttta aatttggttg acttttacgg 1741 tggaacatac gtggtatttg ccttggcgat tttggaaatt gttggaatta tttggattta 1801 cggtttacaa aatttctgtg atgatgttga atttatgaca aacagaaaag tgtcgatata 1861 ttggcgtcta tgttggtcat tcctaacgcc tgttatgatg atagtcattt ttgtctactc 1921 catggtcacc attgaacctt taacatacaa gaaaattgaa tatccagaag cagcaaatat 1981 tgctggttgg gtaatatttg ccattggcat tgctcagttt cctttatggg gttggtggta 2041 tattaaaacc cattacaagg attcattcat gaatacattg agaacttctt taagatcttc 2101 tgaggagtgg ggaccaaaga acccagaaac acgggccaaa tggatagctt ataaagaagc 2161 tttagctttg gaacggggga aaaagttgtc aagcaataaa tttggattct ttaagcaaaa 2221 agtttacaac atatcagtag gaaaaaatta aaaaaaagtt aatcaatcga cagtattaat 2281 atagcaacta acaaatgtat gtatgtatgt atataaatta aatgttactt aaatatttgc 2341 atta