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LOCUS XM_013250915 2379 bp mRNA linear INV 02-SEP-2023 transporter 1 (LOC106086295), transcript variant X4, mRNA. ACCESSION XM_013250915 VERSION XM_013250915.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250915.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2379 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2379 /gene="LOC106086295" /note="sodium-dependent nutrient amino acid transporter 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins" /db_xref="GeneID:106086295" CDS 412..2286 /gene="LOC106086295" /codon_start=1 /product="sodium-dependent nutrient amino acid transporter 1 isoform X1" /protein_id="XP_013106369.1" /db_xref="GeneID:106086295" /translation="MDVKTNEDSGRVTTTVSIELSNNTNQKKTKDKDDNADDRPNWSN GLEFLMSCISMSVGLGNIWRFPFTAYENGGGAFLIPYLIVLFLIGKPMYYLEMIMGQF TSKGSVKAWSICPSFLGVGYGQAFGTLSIITYYSSLIALTLYYMIVSCQAILPWTYCR DEWENCVDSMPKEDTLQFPNDTSNKLTSSSELYFIEIVSKEKDQIDDGLGSPDLYLTL TLFASWIVIFLVIRNGVKSSGKAAYFLALFPYVVLIALLIRAVTLEGAVDGILFFLEP DWGQLANLKVWKEAVVQCFFSLAVGIGPIIMFSSYNRFDHPIYRDAMIVTSLDTLTSM LAGITIFGILGNLAHNLKVSDIKEVVQSGTALAFISYPDAIAKFQAVPQFFAVLFFFM LFVLGVGSIVALQSTIVTIICDQFKSTKYWVVALICSIGGFLLGLVYVTPGGQWILNL VDFYGGTYVVFALAILEIVGIIWIYGLQNFCDDVEFMTNRKVSIYWRLCWSFLTPVMM IVIFVYSMVTIEPLTYKKIEYPEAANIAGWVIFAIGIAQFPLWGWWYIKTHYKDSFMN TLRTSLRSSEEWGPKNPETRAKWIAYKEALALERGKKLSSNKFGFFKQKVYNISVGKN " misc_feature 532..1959 /gene="LOC106086295" /note="Solute carrier 6 family, neurotransmitter transporters; solute-binding domain; Region: SLC6sbd; cd10324" /db_xref="CDD:271359" misc_feature order(571..573,580..582,1597..1599,1606..1611) /gene="LOC106086295" /note="Na binding site 2 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(577..579,583..594,814..816,1297..1302,1315..1317, 1321..1323,1609..1611,1618..1623) /gene="LOC106086295" /note="substrate binding site 1 [chemical binding]; other site" /db_xref="CDD:271359" misc_feature order(577..579,592..594,1300..1302,1396..1398) /gene="LOC106086295" /note="Na binding site 1 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(598..603,811..813,823..825,832..834,1501..1503, 1513..1515) /gene="LOC106086295" /note="substrate binding site 2 [chemical binding]; other site" /db_xref="CDD:271359" polyA_site 2379 /gene="LOC106086295" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggctggttgg agtatacgct gcacgctttg cagctaccaa aactaagctt atttcgataa 61 tattttgccg caacggaaaa catttcagtt caatttattc aattgttaaa gttaggtcga 121 agcgatcggt agtgccgttg aaaccctcca acaactcgca tctgccctcg ccaatcggtt 181 gcgtgttcca agcgaagttt tgtgcgaggt gttcgaaaac cgtttcgtgt ttggatattt 241 gagtgttatc aaaactttgt gagacaatta tattcattta tggaagaata ctttaaatat 301 gtttaattat atagtcgatt aattgcaata aaaaacgtgt taactaaaac gcaaaaacgc 361 acatagaata aaactaacat ttgctgtaaa attgtggtgc ttctgaaaaa aatggatgtt 421 aaaactaatg aagacagcgg ccgagttaca accacagtgt ctattgaact ttccaataac 481 accaatcaga aaaagactaa agacaaggat gataacgccg atgatagacc taattggtca 541 aatggtcttg aatttcttat gtcctgcatt tcgatgtctg ttggattggg taacatttgg 601 cgctttccct ttacggccta tgagaatgga ggaggagctt ttttaattcc atatttgata 661 gtacttttcc tcataggcaa acccatgtac tatctggaga tgattatggg acaatttacg 721 agcaaaggct ctgtaaaagc atggtctata tgtccatcgt ttttaggtgt gggctatggt 781 caagcatttg gcacattgtc cattataacg tactattcat ctttaattgc tctgactttg 841 tactatatga tcgtatcttg tcaagcgatt ctcccttgga catattgtcg cgacgaatgg 901 gaaaattgtg tagattcaat gccaaaagaa gacacattgc aatttcccaa tgacacatca 961 aataaattga ccagcagttc ggagttgtac tttattgaaa ttgtatcaaa ggaaaaggat 1021 caaatagatg acggcctggg atctcccgat ttgtatttaa cgttgacgtt atttgcatca 1081 tggatcgtta tttttctcgt tatacgtaat ggtgttaaga gttccggaaa agctgcatac 1141 tttttggcgt tatttcccta cgtagttctc attgctttat taatacgcgc ggtaaccttg 1201 gagggtgccg tggatgggat tttattcttt ttggaacctg actggggtca gttggcaaac 1261 ttaaaggttt ggaaggaagc tgttgtccag tgcttttttt ctctggcagt tggcattggc 1321 ccgataatca tgttttcgtc ctacaaccga tttgatcatc caatttacag agatgccatg 1381 attgttacca gcttagatac gttgaccagt atgttggcgg gtattacaat tttcggaata 1441 ttgggcaatc tggcgcataa tcttaaggtg tccgatataa aggaggtggt tcaaagtggc 1501 actgcattgg catttatatc gtatccagat gctattgcga aatttcaggc tgttcctcaa 1561 tttttcgcag ttcttttctt cttcatgctg ttcgttttgg gagtgggctc tattgtagct 1621 ctgcagagca caattgtcac cattatatgt gatcagttca agtccacgaa atattgggtt 1681 gttgctttga tttgttcaat aggtggattt ctattgggtt tggtttatgt gaccccaggt 1741 ggccagtgga ttttaaattt ggttgacttt tacggtggaa catacgtggt atttgccttg 1801 gcgattttgg aaattgttgg aattatttgg atttacggtt tacaaaattt ctgtgatgat 1861 gttgaattta tgacaaacag aaaagtgtcg atatattggc gtctatgttg gtcattccta 1921 acgcctgtta tgatgatagt catttttgtc tactccatgg tcaccattga acctttaaca 1981 tacaagaaaa ttgaatatcc agaagcagca aatattgctg gttgggtaat atttgccatt 2041 ggcattgctc agtttccttt atggggttgg tggtatatta aaacccatta caaggattca 2101 ttcatgaata cattgagaac ttctttaaga tcttctgagg agtggggacc aaagaaccca 2161 gaaacacggg ccaaatggat agcttataaa gaagctttag ctttggaacg ggggaaaaag 2221 ttgtcaagca ataaatttgg attctttaag caaaaagttt acaacatatc agtaggaaaa 2281 aattaaaaaa aagttaatca atcgacagta ttaatatagc aactaacaaa tgtatgtatg 2341 tatgtatata aattaaatgt tacttaaata tttgcatta