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LOCUS XM_013250914 2388 bp mRNA linear INV 02-SEP-2023 transporter 1 (LOC106086295), transcript variant X3, mRNA. ACCESSION XM_013250914 VERSION XM_013250914.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250914.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2388 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2388 /gene="LOC106086295" /note="sodium-dependent nutrient amino acid transporter 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins" /db_xref="GeneID:106086295" CDS 421..2295 /gene="LOC106086295" /codon_start=1 /product="sodium-dependent nutrient amino acid transporter 1 isoform X1" /protein_id="XP_013106368.1" /db_xref="GeneID:106086295" /translation="MDVKTNEDSGRVTTTVSIELSNNTNQKKTKDKDDNADDRPNWSN GLEFLMSCISMSVGLGNIWRFPFTAYENGGGAFLIPYLIVLFLIGKPMYYLEMIMGQF TSKGSVKAWSICPSFLGVGYGQAFGTLSIITYYSSLIALTLYYMIVSCQAILPWTYCR DEWENCVDSMPKEDTLQFPNDTSNKLTSSSELYFIEIVSKEKDQIDDGLGSPDLYLTL TLFASWIVIFLVIRNGVKSSGKAAYFLALFPYVVLIALLIRAVTLEGAVDGILFFLEP DWGQLANLKVWKEAVVQCFFSLAVGIGPIIMFSSYNRFDHPIYRDAMIVTSLDTLTSM LAGITIFGILGNLAHNLKVSDIKEVVQSGTALAFISYPDAIAKFQAVPQFFAVLFFFM LFVLGVGSIVALQSTIVTIICDQFKSTKYWVVALICSIGGFLLGLVYVTPGGQWILNL VDFYGGTYVVFALAILEIVGIIWIYGLQNFCDDVEFMTNRKVSIYWRLCWSFLTPVMM IVIFVYSMVTIEPLTYKKIEYPEAANIAGWVIFAIGIAQFPLWGWWYIKTHYKDSFMN TLRTSLRSSEEWGPKNPETRAKWIAYKEALALERGKKLSSNKFGFFKQKVYNISVGKN " misc_feature 541..1968 /gene="LOC106086295" /note="Solute carrier 6 family, neurotransmitter transporters; solute-binding domain; Region: SLC6sbd; cd10324" /db_xref="CDD:271359" misc_feature order(580..582,589..591,1606..1608,1615..1620) /gene="LOC106086295" /note="Na binding site 2 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(586..588,592..603,823..825,1306..1311,1324..1326, 1330..1332,1618..1620,1627..1632) /gene="LOC106086295" /note="substrate binding site 1 [chemical binding]; other site" /db_xref="CDD:271359" misc_feature order(586..588,601..603,1309..1311,1405..1407) /gene="LOC106086295" /note="Na binding site 1 [ion binding]; other site" /db_xref="CDD:271359" misc_feature order(607..612,820..822,832..834,841..843,1510..1512, 1522..1524) /gene="LOC106086295" /note="substrate binding site 2 [chemical binding]; other site" /db_xref="CDD:271359" polyA_site 2388 /gene="LOC106086295" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggctggttgg agtatacgct gcacgctttg cagctaccaa aactaagctt atttcgataa 61 tattttgccg caacggaaaa catttcagtt caatttattc aattgttaaa gttaggtcga 121 agcgatcggt agtgccgttg aaaccctcca acaactcgca tctgccctcg ccaatcggtt 181 gcgtgttcca agcgaagttt tgtgcgaggt gttcgaaaac cgtttcgtgt ttggatattt 241 gagtgttatc aaaactttgt gagacaatta tattcattta tggaagaata cttgtaaatt 301 tgtgcaaatt gagttattat taatcgatta attgcaataa aaaacgtgtt aactaaaacg 361 caaaaacgca catagaataa aactaacatt tgctgtaaaa ttgtggtgct tctgaaaaaa 421 atggatgtta aaactaatga agacagcggc cgagttacaa ccacagtgtc tattgaactt 481 tccaataaca ccaatcagaa aaagactaaa gacaaggatg ataacgccga tgatagacct 541 aattggtcaa atggtcttga atttcttatg tcctgcattt cgatgtctgt tggattgggt 601 aacatttggc gctttccctt tacggcctat gagaatggag gaggagcttt tttaattcca 661 tatttgatag tacttttcct cataggcaaa cccatgtact atctggagat gattatggga 721 caatttacga gcaaaggctc tgtaaaagca tggtctatat gtccatcgtt tttaggtgtg 781 ggctatggtc aagcatttgg cacattgtcc attataacgt actattcatc tttaattgct 841 ctgactttgt actatatgat cgtatcttgt caagcgattc tcccttggac atattgtcgc 901 gacgaatggg aaaattgtgt agattcaatg ccaaaagaag acacattgca atttcccaat 961 gacacatcaa ataaattgac cagcagttcg gagttgtact ttattgaaat tgtatcaaag 1021 gaaaaggatc aaatagatga cggcctggga tctcccgatt tgtatttaac gttgacgtta 1081 tttgcatcat ggatcgttat ttttctcgtt atacgtaatg gtgttaagag ttccggaaaa 1141 gctgcatact ttttggcgtt atttccctac gtagttctca ttgctttatt aatacgcgcg 1201 gtaaccttgg agggtgccgt ggatgggatt ttattctttt tggaacctga ctggggtcag 1261 ttggcaaact taaaggtttg gaaggaagct gttgtccagt gctttttttc tctggcagtt 1321 ggcattggcc cgataatcat gttttcgtcc tacaaccgat ttgatcatcc aatttacaga 1381 gatgccatga ttgttaccag cttagatacg ttgaccagta tgttggcggg tattacaatt 1441 ttcggaatat tgggcaatct ggcgcataat cttaaggtgt ccgatataaa ggaggtggtt 1501 caaagtggca ctgcattggc atttatatcg tatccagatg ctattgcgaa atttcaggct 1561 gttcctcaat ttttcgcagt tcttttcttc ttcatgctgt tcgttttggg agtgggctct 1621 attgtagctc tgcagagcac aattgtcacc attatatgtg atcagttcaa gtccacgaaa 1681 tattgggttg ttgctttgat ttgttcaata ggtggatttc tattgggttt ggtttatgtg 1741 accccaggtg gccagtggat tttaaatttg gttgactttt acggtggaac atacgtggta 1801 tttgccttgg cgattttgga aattgttgga attatttgga tttacggttt acaaaatttc 1861 tgtgatgatg ttgaatttat gacaaacaga aaagtgtcga tatattggcg tctatgttgg 1921 tcattcctaa cgcctgttat gatgatagtc atttttgtct actccatggt caccattgaa 1981 cctttaacat acaagaaaat tgaatatcca gaagcagcaa atattgctgg ttgggtaata 2041 tttgccattg gcattgctca gtttccttta tggggttggt ggtatattaa aacccattac 2101 aaggattcat tcatgaatac attgagaact tctttaagat cttctgagga gtggggacca 2161 aagaacccag aaacacgggc caaatggata gcttataaag aagctttagc tttggaacgg 2221 gggaaaaagt tgtcaagcaa taaatttgga ttctttaagc aaaaagttta caacatatca 2281 gtaggaaaaa attaaaaaaa agttaatcaa tcgacagtat taatatagca actaacaaat 2341 gtatgtatgt atgtatataa attaaatgtt acttaaatat ttgcatta