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LOCUS XM_013250145 5954 bp mRNA linear INV 02-SEP-2023 (LOC106085723), transcript variant X6, mRNA. ACCESSION XM_013250145 VERSION XM_013250145.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250145.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5954 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5954 /gene="LOC106085723" /note="protein strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106085723" CDS 344..4579 /gene="LOC106085723" /codon_start=1 /product="protein strawberry notch isoform X5" /protein_id="XP_013105599.2" /db_xref="GeneID:106085723" /translation="MPKKIQSSPSVGMPTSSSNAGGNPESAGGMPSFNTSQLMGMAAL AAAMFNATSETKSPTNSGNMNLNIGAIGGMGSMSGGLQASTSATAASRQNSTATSISY QANSGLNKAASLLAQMTMGLGNFEPAPAPVASTANNTGLSSQSKMNAIVLQKIQALVA ANPQFLTSGIPNQLLQQLLMQPMKTIQKQVTNTPTTVVQHEEDEADYEEMGVAETYAE YWPAKLKLGKKHPDPVVETASLSSVEPCDVYYKLSIPLDTIQSGQLSALQLESITYAS QAHDHLLPDGSRAGFLIGDGAGVGKGRTIAGIIYENYMKGRKKALWISVSNDLKYDAE RDLNDIGAAKIEVYALNKFKYAKINSEVNNNVKKGVIFSTYSALIGESNNKTGKYKSR LKQLLQWCGEDFDGLIIFDECHKAKNLCPVGSGKPTKTGQTVLELQNKLPRARVVYAS ATGASEPKNMAYMVRLGLWGQGTAFPTFNDFIAAVEKRGVGAMEIVAMDMKLRGMYIA RQLSFHGVTFKIEEVTLSKDFRRIYDESVQLWVEAMHKFIEAADLIDAESRMKKTMWG QFWSSHQRFFKYLCIAAKVNHVVHIAREAIKYGKCVVIGLQSTGEARTLEQLEREDGE LTDFVSTAKGVFQSLVEKHFPAPDRNRINRILGLSEPENHKSTIQSIIAEVKAANRYK DDPSSSSTNNSSNKRKSSRSEMRNNKKSRNDSWNDSDDDDKDSDNESNNDSDFKNSES EESDAGNRSDSYESSDFNPFGASGSDSDTDPWLARAKKKKKKKTKTKDASSATAATSL GQGSMNNNNNSSNFLTLSNVSPPKKKAPVSTQDKIQDLLQKKQELKGTVTPIGVHGVK MNYGPPPKDAIERACSMKEELLRKIELLGERLPPNTLDQLIDELGGPDNVAEMTGRKG RVVQSDDGSIQYESRSEQDVPLETLNITEKQRFMDGTKDVAIISEAASSGISLQSDRR VRNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYIFLISDLAGERRFASTVAK RLESLGALTHGDRRATETRDLSQFNIDNKYGRTALETVMKAIMGYEQPLVPPPTDYHG EFFKDIANALLGVGIIVNSETTPGLLSLDKDYNNISKFLNRILGMPVDLQNRLFKYFT DTLAAIINQARKGGRFDLGILDLGAAGENVTRVKLVRFIRKHATGKAPAELHTVRVER GMIWQEAIEKYADLISENEGFYLSHQVRNNKRTAILAVELENQPQNALQSGKKKDGKP SKKEIMFQIYRPNTGLQVRHESLAEIEKKYKKVTMSDAEKHWTEQYDASVNTCSHAYW NGNCRNVSVGAECEVGLRQRLYSVLAGSVLSVWSRVEQILAMRNANNKMQVIRMKTTE GEKIVGTLIPKSCHDLLVQDLKSDAERVEEVNF" polyA_site 5954 /gene="LOC106085723" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gagttataaa aacacaatag tcatcatatc agttgttggt cggttagttc ggggcgaaaa 61 aaaaaaaaga ataacgaaaa gaagcaacca agatataatc gttacttcaa ctaaacgttc 121 attcgatttt gatgatgcca tcgatgagga ttctggatct gattttgatg aagatgaaga 181 tccagataaa atagaagttc caggtggcgg aagagattta caaaccgctg ttacatacgc 241 caagaacagt acaattaaaa aacaaggcca cctcaataat aattccctat taatttcaaa 301 tcaaacggga ggagcaacat ctgcatttaa tagaaaccac actatgccga aaaagataca 361 aagttcaccc tcggtcggta tgcccacaag tagttcaaat gctggcggaa atcccgaatc 421 ggcaggtggt atgccatcat ttaatacctc acaattaatg ggcatggctg ctttagctgc 481 agccatgttc aatgcaacca gtgaaaccaa atcccctaca aattctggaa acatgaactt 541 aaatatagga gctattggtg gtatgggaag catgagtgga ggccttcaag cttcaacatc 601 agccactgct gcttcaagac aaaactctac agcaacctct attagttatc aggcaaattc 661 tggtcttaat aaagccgcct ctttgttggc gcagatgacc atgggtttgg gtaactttga 721 accggcacct gcccctgtcg cctcaacagc aaacaatacc ggcctttcat cacaatccaa 781 aatgaatgcc atagttttgc aaaagattca agctttagtc gcggcaaatc cacaattcct 841 aacaagtggt ataccaaatc aattattgca acagttgcta atgcagccca tgaagactat 901 tcaaaagcag gttaccaata ccccaacaac tgtagtacaa cacgaagaag atgaggcgga 961 ttatgaggaa atgggggtgg cagaaaccta tgcggaatat tggccagcaa agttaaaact 1021 gggcaagaaa catcctgatc ccgtggtgga gactgcctcc ctgtcttcgg tagaaccctg 1081 tgatgtttac tacaaacttt ccatacctct cgataccata caaagtggcc aattaagtgc 1141 tttgcaattg gaatccataa cctatgcttc tcaggcgcat gatcatcttt tacccgatgg 1201 cagtcgtgct ggttttctca ttggtgatgg tgctggtgtg ggcaaaggtc gtacaattgc 1261 tggtattatc tatgaaaact atatgaaggg gcgtaaaaag gctttatgga tatcagtatc 1321 gaatgatttg aaatatgatg ccgaaaggga tttaaatgat attggagcgg ctaaaattga 1381 ggtgtatgct ttgaataagt ttaaatatgc caaaatcaat tccgaggtta acaacaatgt 1441 aaagaaaggt gtcatcttta gcacctactc cgcattaatc ggtgaatcga ataacaagac 1501 tggtaaatat aaatcaagac ttaaacaatt acttcaatgg tgcggcgagg atttcgatgg 1561 cctgataatt ttcgatgagt gtcacaaggc caaaaatttg tgtcccgtgg gttcaggaaa 1621 gcctacaaaa accggtcaaa ccgtattgga attgcagaat aaattaccca gagctcgtgt 1681 agtatatgct tcggcaactg gtgcttcaga acccaaaaac atggcgtata tggtgcgttt 1741 aggtttatgg ggtcagggta cggcttttcc cacatttaat gatttcatag cggctgttga 1801 gaaaagaggt gttggagcca tggaaattgt ggccatggac atgaaattgc gaggcatgta 1861 tatagctcgc cagctaagtt ttcatggagt aactttcaaa atcgaagaag taactttgtc 1921 caaagatttt cgccgcatct atgatgagtc ggtacaattg tgggtagaag ccatgcacaa 1981 attcattgag gctgctgatc taatcgatgc cgagagtcgc atgaaaaaaa ccatgtgggg 2041 tcaattttgg tcgtcacatc aacgtttttt caaatatttg tgtatagctg ccaaagttaa 2101 tcatgtcgtg cacatagctc gagaagccat taaatatggc aaatgtgtag tcataggtct 2161 acaatcgacg ggtgaagcac gtactctgga acaactggaa cgagaagatg gagaacttac 2221 agattttgta tcaacagcaa agggcgtttt tcaatctcta gtcgaaaagc attttccagc 2281 tcccgatcgc aaccgcatta atcgcatatt aggtctctct gaaccagaga atcacaaatc 2341 caccatacaa tcaattattg ccgaagttaa ggcagccaat agatataaag atgatccctc 2401 ctcttcgtcc accaataaca gtagcaacaa acgaaaatct tcacgttctg agatgcgcaa 2461 caataagaaa tcgcgcaatg attcttggaa tgattccgat gatgatgata aggattccga 2521 taatgaatcc aataatgatt cagattttaa aaattccgaa tcagaagaat cggatgccgg 2581 caatcgtagt gacagctacg aatcatccga ttttaatcca tttggggcaa gtggctcaga 2641 ctcagatact gatccttggt tggcccgtgc caaaaagaag aagaaaaaga agacgaaaac 2701 caaggacgca tcctccgcaa cagcagctac atcattggga caaggctcca tgaataacaa 2761 caacaatagc agtaatttct taacgctgag taatgtttca ccaccgaaaa agaaggctcc 2821 cgtctctaca caagacaaaa ttcaagattt actacagaag aaacaagaac tcaagggaac 2881 agtgacaccc ataggagtgc acggggtcaa aatgaattat ggtccaccgc ccaaggatgc 2941 cattgagaga gcctgctcca tgaaagagga acttttgcgt aaaatcgaat tactgggcga 3001 acgtttgcca cccaacactt tggatcagct aatcgatgaa cttggcgggc cggacaatgt 3061 agccgaaatg acaggccgca aaggacgtgt ggtccaatcc gatgatggtt ctatacagta 3121 cgaatcaaga tcggaacaag atgttcctct ggaaacctta aacattaccg aaaaacagcg 3181 ctttatggat ggcaccaaag atgtggccat tatctcggag gccgcctcaa gtggtatttc 3241 gctgcaaagt gatcgtcgtg tgcgcaatca gagacgacgt gtccatatca ccctcgaatt 3301 gccgtggtct gcagatcgcg ccatccaaca gttcggtcgt acacatcgtt ccaatcaagt 3361 caatgcaccc gaatacatat tcctcatctc cgatttggcg ggtgaacgac gtttcgcctc 3421 caccgtggcc aagcgtttag aatcattggg tgccttaacg catggcgatc gtagagctac 3481 tgagacgcgc gacttgtcgc aattcaatat tgacaacaaa tatggccgta cggctttaga 3541 aactgtgatg aaagctatca tgggctatga acagcccttg gtgccaccac ccaccgatta 3601 tcacggcgaa ttctttaagg atattgccaa tgccctgcta ggtgtgggta ttatagttaa 3661 tagtgaaacc acaccgggtt tgttgagctt ggacaaagac tacaataata tatcgaaatt 3721 tttgaataga attttgggta tgccagtaga tttgcaaaat cgtctattca aatatttcac 3781 tgataccctg gcggccatta tcaatcaggc tcgcaaggga ggacgttttg atttgggtat 3841 tttagatttg ggagcggctg gcgagaatgt aactcgagtc aaactggtgc gatttatacg 3901 taaacatgcc actggcaaag ctcccgccga attacatact gtgcgtgtgg agcgaggcat 3961 gatatggcaa gaggctattg agaaatatgc cgacttaatt tctgaaaatg aaggctttta 4021 tctttcacat caggtgcgaa ataacaaacg tactgctatt ttggctgtcg aattggaaaa 4081 tcaacctcaa aatgctttgc aaagcggcaa gaagaaggat ggtaagccca gtaaaaaaga 4141 gatcatgttc cagatttacc gtcccaatac cggtcttcaa gtacgtcatg agtcgttagc 4201 tgaaatcgaa aagaaataca aaaaagtaac catgtcagat gccgaaaagc attggaccga 4261 acaatatgat gcttcggtta atacctgctc acatgcttat tggaatggta attgccgtaa 4321 tgtcagcgtg ggtgcagaat gtgaggttgg tctacgacaa cgtttgtata gcgttttggc 4381 tggctctgtt ctatcggtgt ggtcgcgagt ggaacaaatc ttggccatgc gtaatgccaa 4441 taataagatg caagttatac gcatgaaaac cacagaaggt gaaaaaattg taggcactct 4501 cataccgaaa tcatgtcatg atctattagt acaggatctt aagtctgatg ccgaaagggt 4561 ggaagaagtc aacttctaaa aatacaaaag caaactttta agttacccta aactaaccaa 4621 ggttactttt tataaaaagt accatacaac tggttaagaa acacacatat tttatttttc 4681 ataattctta ttaagaatat tttttgaaaa atattctaaa ataacaacaa ataaacactt 4741 gagttgtagt attaaatagc tacaactgtg aaagaaaaag aaaaccaaca aaccaaaacg 4801 acgcttaatt tatggacttt atttttcatt taagtttatt tcctttttta cataattgat 4861 aaataaaaac aaaaatatta ttcttaaata ttacaaaaac agaaacaaac aatccaaaat 4921 aataaaaaca aaacacagaa aaatttaaat gaaaccatat acgactttta taattataaa 4981 ctaaactata caaaaattaa ttataattaa tatttaatta taataacaat aatgcttaat 5041 gattatacaa aaaaaaagaa aaccacattt gagaaattat cataactata gtcaataact 5101 cttaaacaaa ccggaacaca cacacacaca cacaaatttt aaattataaa cctcaaaaaa 5161 caaatacaag acatcttaaa tggatataat atggttaacc caaaatagca tacatgggcg 5221 gaaagtgatt gtaacgacaa agaattccct caaaaaaaaa aaaaaactct tgctgtatag 5281 tttcccttat taatttaaac aggaaatgtt tatttttctt ctacatttca gtttaatttc 5341 ttgtttcttg cttaatcagc tataggactt tagttattat ttttgatatt ctaacaacaa 5401 attcaattac aattgaaatt aatccaatta attccaaaaa aaaactctta acattatcat 5461 aatgttgata ttgaattaaa tttataattt attgggagaa aacaaaaaca aaattttatt 5521 tcgttatcgt ttccatgttt ttcaaaaaca aaaatataga aaactgaaaa tttgattttg 5581 actttttttt tgtacaccaa acagagcaaa ctcagtaaaa acacaaatta agtttcgtta 5641 ttttattttc tttacggaga tcatagttta tttattattc ttaatgctat tcttactatt 5701 attttaaata ttcattttac aaaattattt tctaaaacct aatttttaag aaaatttcta 5761 gtttgtatgt agtttcgtag aaatgaaaac caacaacaaa aacaaaaaaa aatggaaaaa 5821 atccaaaaaa aaaaataaat aaaattctat tttatgtttg atgtatatgt acattaatga 5881 gaactacaaa cagcaacaaa caaaaataaa tgaatgaata ttgaaataaa aattgaaaaa 5941 ttctaaaata caaa