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LOCUS XM_013250141 6345 bp mRNA linear INV 02-SEP-2023 2-binding protein 1 (LOC106085742), transcript variant X1, mRNA. ACCESSION XM_013250141 VERSION XM_013250141.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250141.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6345 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6345 /gene="LOC106085742" /note="interferon regulatory factor 2-binding protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106085742" CDS 1763..3412 /gene="LOC106085742" /codon_start=1 /product="interferon regulatory factor 2-binding protein 1 isoform X1" /protein_id="XP_013105595.1" /db_xref="GeneID:106085742" /translation="MSLQTKRQHCYLCDLPRMPWAMINDFSEAVCRGCVNYEGADRIE LVLDAARQMKRLHQASKRSHENGEVQSASVQPPTQGQHRVAGSGGGGPISVGVVGQQQ QQHHHAYPSQRIGPPQPTLMDFPVKMEAHDANVRPVRISHMAPHHMSMSSRAVAAAAA AAGSNLNPAQVGGPVPPALSVNLKRSPSEEDDHGHTDGGGPSGIKRPALDDPSTRPPL TRGDSLPAAVSFVSERNTGMREKHQPVRAPSFDASTFKPGVFPPLPHPAVSLGNSTPP ALPTSQPQPLPPQSIAPPSMPQLSTTASSVTQLAQSPMANLMSITETLPPGSPRNGPS PPGPPPPRTASRGSQHSPNSSAGSSSGRRSSGSRHVSSTTVTSSEAQGNPQQQSTAPP VGPGASVNNPNGGVSSGPTNGPLASAAPGGPDGVNGPAGNNPAGQPTAGLTSTGAAPP GTTAPPPNTAQNTTLKCTLCQERLEDTHFVQCPSVNHHKFCFPCSRESIKRQNGLGNE VYCPSGDRCPLANSTIPWAFMQGEITTILGEEVKVKKERES" misc_feature 1778..1933 /gene="LOC106085742" /note="Interferon regulatory factor 2-binding protein zinc finger; Region: IRF-2BP1_2; pfam11261" /db_xref="CDD:463250" misc_feature <2084..3118 /gene="LOC106085742" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 3155..3325 /gene="LOC106085742" /note="variant of RING finger, HC subclass, found in interferon regulatory factor 2-binding protein IRF-2BP1, IRF-2BP2, and similar proteins; Region: vRING-HC_IRF2BP1-like; cd16511" /db_xref="CDD:438174" polyA_site 6345 /gene="LOC106085742" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtattggta ggtggtggtg gtgctagcta agaagtagga tgataataat gttgataatg 61 atgatgatga cgatgacgac tactaagaga tggttgtcag agcagggtcg gatggccggt 121 ggagggaagg tatatttgtg aatggtgtat acacacagag gcgagtgtaa aaattcatga 181 gtgattcaca gtggtggtgt ttgcctctat tccgttttat tcggttgcag actgtcagat 241 acaaaggtag agcgcgcgcg ttgaacgaac gtacggataa caatttaatt gtgctctttt 301 tttgattttc tatacttgta ccaatttatg tatatcgcgt cgtctacggc attaaacaca 361 gagctgaaag ctagcggcaa tggtggtcac agtcaatatt gagactgcca agttagtaaa 421 ccacactcaa caataaaatt gaaacagaac agatcgtcat tctcaaaacg ttaataaatt 481 cgtaactttt ctaaaaacgc atagtgaata ataatagcaa ataagagaag aacgagaaaa 541 ggagaacaac aaattaaaaa aagagacgaa agggaaaaaa cctccgatta acttgtgcat 601 ttcggtacga gaaagaactg ttgtgaactg tgctgttcga tctgaaacaa aaggggagtg 661 attgtctgtg tgtgtgtgtg tagagaggac aacattgaga tttcgtgcgc ctattctagt 721 agtactcctc ttcctgttct ttctcctccc cccaagttaa agttaatgtt tgctacgcat 781 tataatatct aaaaagctac ggacgtacta tacatgtgca tatgtatgag gtacatgtga 841 tggacaaagt cctatgtatg tgtcgtcgtc gtcgtcgtac acggatatag tgaattctct 901 tgtgtgtttt gttgttcatt cctctttgat ttcctccttg cttgccaaat acacaaaaat 961 caataaagga caatagagag caaaaggaac aaacgaacgg aacgtagcgc acgactgttg 1021 gtcggtcggt atacaaaaca acacatacac gtacaaacac ggctgcacgg caagacacgg 1081 tcttataacg gacaacggcc tcatggattg tgttagtacg tttgcgacgt tacgcgagtg 1141 cagttgtggt gatgtatgtg ttttcctcga ctcttgtcgt tgtggataat gcgcggatga 1201 acctagatgg gattgtttaa gcctaccata aaagtaaacc ccaaattgca tttgcggcaa 1261 tcagtagcga gaagaacagc aacataaaat tcagaattct ttttaaaaag agtaccctaa 1321 caattagttt aagttccccc tcaaaataag tgttctaaac accaattaag taatccaagt 1381 gtaaatgttc caatcggaat aaaatcaatt tgctgcatcg caagcaagca agcaaaaaaa 1441 aaaaaagaaa aacaggaaga aagaagaaaa gtcctttgcg tgaaaattta ttgtatgtat 1501 tgtgtaaact tgtagactgg tgtagctacc tagttttcga aaagagaaca ggtcgtgtcg 1561 tataccagca acggaacaga gctgcgctaa aacaacaaca aaaaacaaaa caaactcagt 1621 ttcaaccccg ttgtgcaaga gaaaaaagaa ccaacacgga atattgtcca gaaaaaaaaa 1681 caggcaaagg gtgaccaagc aataccaagc aacgagccca gtgaatattt cctagtaggg 1741 gtcgaccaca gctacaatca tcatgtccct acaaacaaag cgccaacact gctatttgtg 1801 tgatctgccc cgcatgcctt gggccatgat caatgatttt tcggaggcag tgtgtcgagg 1861 ctgtgtcaac tatgagggag ccgatcgcat cgagttggtg ctggatgctg ccagacaaat 1921 gaagcgtctg catcaggcct ccaagcgcag tcatgagaac ggtgaagtgc agtccgcctc 1981 agttcaacca cccacgcaag gacaacaccg tgttgctgga agtggcggcg gcggacctat 2041 aagtgtggga gtggtgggcc agcagcagca gcaacaccat catgcctatc cctcacaacg 2101 catagggcct ccgcagccca cacttatgga tttccctgtg aaaatggagg cccatgacgc 2161 caatgtcaga cccgtccgta tttctcacat ggccccacat cacatgtcca tgtccagcag 2221 agcggtagca gccgccgctg cagcagctgg ctccaaccta aatcctgctc aggtgggagg 2281 tcctgtgccg cctgccttgt cggttaattt gaaaaggtcg ccatccgaag aggacgatca 2341 tggccacaca gacggcggtg gaccatcggg cattaagaga cctgccttgg atgatccctc 2401 aacacgccct cccctaacca gaggcgattc attgccggcc gccgtatcat ttgtatcgga 2461 acgtaataca ggaatgcgcg aaaagcatca acccgtcaga gcgccctcat ttgatgcatc 2521 tacatttaaa ccaggcgttt tcccaccatt gcctcatccg gccgtttcgc tgggcaattc 2581 gacgccacca gcactaccaa catctcagcc acaacctctt ccaccacagt caatagcacc 2641 accatctatg ccacaattat caacaacagc ctcttcagtt acacaattag ctcaaagtcc 2701 gatggctaat ttaatgtcaa ttacagagac attgccacca ggaagcccac gcaatggacc 2761 cagtccaccc ggaccaccac cgccaaggac ggcatccaga ggcagtcaac attcgccgaa 2821 tagttcagct ggttcatctt caggacgtcg gtcttctggt tctcgtcatg tgtccagcac 2881 aacagttact agttcggaag cgcagggcaa tccacaacaa caaagcacag cgcctccagt 2941 gggccctgga gcttcggtca acaatcccaa tgggggtgtt agcagtggac ccactaatgg 3001 gcccttagca tcggcggcac ccggtggtcc agatggtgtg aatgggccag caggaaataa 3061 tccagcaggt cagcccacag ccggtctcac aagtacaggg gccgcaccac ccggtacaac 3121 agcgcctcct ccaaataccg ctcaaaacac caccctcaag tgtaccctct gccaggaacg 3181 acttgaagat actcactttg tgcaatgccc ctcagtgaat catcacaaat tctgctttcc 3241 ctgcagcaga gagagtatta aacgacagaa tggccttggc aacgaggttt attgtcccag 3301 tggcgatcgg tgtcccttgg caaactcaac aataccttgg gcttttatgc aaggcgaaat 3361 caccactatt ttgggagaag aggttaaggt caagaaggaa cgggagtctt aatgtccatt 3421 ttattgcaaa aagctgaggc gagctttgga aaaatactaa acaaaactcc aaactatttt 3481 ctcaaaaagg acgagtttgt tctctcaatg caaaatcgaa ccgagttcga aacaaatgaa 3541 aagaagaaac aattttttgg aaactacgac gcagcttttg ttttagcgtt tgtgtgattt 3601 gtattctgag gataaagagc tctcccaacc accaccaaca ccaccaccac caacaacaac 3661 aacatcatca accacaacaa ccacaacaac aacaatctta gttatttaaa tatttatttt 3721 ggaaatcatt tcgaaaactg aactcgacga ttttgtacgt gtgggtgtgc cctggaacac 3781 caatgtttca agatatcaac caacattgtc aggatatcaa ccaacagatg tcgttgcagg 3841 cattcaaaca acaacaaaaa acaattgtct ttggtcaact gctgctgcgt ttggaaggag 3901 gcaagcagtc catcagcaaa cacaccagtc gcccgccgct aacgctgccg ccaaacacag 3961 tggctgcgca taatcaatat tgtaaataat ggaataacta attaaacata tagaaaatat 4021 ttaatatatc cctagtaatc tatataataa tacaatatat attataaata tgaaaagcga 4081 ttaatgtagg tctaatttat gtatgtatgt atgtatgtta tgtatgtaat attctaaagt 4141 gtatttgttt tatcttttta tgtattctcg tacttgcata tctatttata tcggcgaatg 4201 tatgtgtgta tgtatgtgag tgagtgagca ttatatgaag gactctgcct cttctctatg 4261 ttgaagataa tggaaaaatg agtcaatact ttgtagacca ggaatccgat ttgaatcctg 4321 tgagattttt acttttcccc ttacccactt tttccccttt ttttttaagt tactgtgggt 4381 ttatataaat ttgtttgtgt gtgtgtgtgt gtgtatatgt gccagtatac ccgggtaaca 4441 cccacttata tacatgcaac tcagctctgc tccataagaa tatgttgtgc tggccaagat 4501 gtaggtcaaa gtcaatgtgc tccatgtatg ctaacgctgc aaaaatatga gtttgtaatt 4561 gccagttgat tcaatattct accatccact ctcggcccac aaaaaaggga gcaatgtttc 4621 aaggatcctt ggttatttat tttgttttct ttctttcctt tttactgttc ttatttcaaa 4681 tgctggcaca tacatgcacc cactatcaat ctagctacct aactaactac ttacttacat 4741 agatacatac atagattgtt ttacaaagta aaaaccccga tttaaataat attgacttta 4801 tgttgtacac acattttata tagccatgtg atcatagcca caaacatacc gcgaagagga 4861 tgaaactatg atctaaattt tgtaaattct ttttttgtag tcctgtagtg tagtagcgat 4921 aaacaaatag tgtagttgta gtaaacacat tcaccaggct cccatccccc aagcagccca 4981 gtccacttga atggtggagg cgtagccgga gccgggagac cagtgattgt agccctaaga 5041 aaaatctaaa catcagcaaa cgataattgc tgtatgcgat ggtcaacatt ttgcaaatga 5101 ccccatcata ataatacaca aaataaaatg agaaagaaca ttttcaacta taaaatagac 5161 gctaagtatt catttgaatt agcccaaaaa ccccaagcaa aggataaata acaaatggac 5221 aaaaaactcc actaaacaac aacaaacata agtccttgaa tacttgaaac ttgacaacat 5281 caacactcac acacagtacc aatttgttgg attctataag cgcactcgct atgatttggc 5341 gggcagtctc agattcaaaa ttacttggtt ttagtataga atttgcgact ccatatgata 5401 aggcagcagc agcagcatat atgaatattc tgaatgttgt ttgttttgaa tcttgctcct 5461 ataatgggta ctctaataca taaaatacct atagacatat agtatacttg aattgatcca 5521 acgccatact ccggctgaga ctctggcaga agcgatagct acggaacgat tgaacgatct 5581 tcaattgctc aaactaggca agaagacgac gaaatcagtc caaaggtcct cagctaagca 5641 gaacccataa ttgtggcata ataatctaag agatcaaaag gccatcaata ttgatagctt 5701 gcgggtgtct gcctaatttc aacaaaaaaa aaacaactaa aataaaacaa aattttttct 5761 tgtgatattc agcgtcagtt tatacaaaaa aaaccaaaaa aaaaaaaaca aaaatcaaac 5821 cttcaaatga aacagaccac aacaattgtt cagttcacca tcgctcgcct tgcgaggcaa 5881 aatgaattga aaaaatgtta cttttttact cgaataactc gaaaattata caaaaaaaaa 5941 attagctaat aacaaaaaat aactaaacaa ttggaaatca ttttgaaaca cccgttaggg 6001 aagaaaacaa gtattacgcc tgtaacccat cctgcaacat cattacaggt agcaaatgtc 6061 ccaagtgtgg gacaaaagga gctctctctg catagaaaca aaaaccataa caaacgcaac 6121 atagagaaca tttaaggact atacaacatt ttattagata cccaatatga acgacacaca 6181 caattacacg caagtgggcg ttcaatactg ggataacaaa caaaaaacta aaattttctc 6241 acaccaaaaa aaaaaaaaaa acaaagaaaa tgaaatttct aaaacaaaac aatcgaatgt 6301 taaataaagg ataattgata atttatcgat acatgccaaa atcaa