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LOCUS XM_013250137 6053 bp mRNA linear INV 02-SEP-2023 (LOC106085723), transcript variant X5, mRNA. ACCESSION XM_013250137 VERSION XM_013250137.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250137.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6053 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6053 /gene="LOC106085723" /note="protein strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106085723" CDS 521..4678 /gene="LOC106085723" /codon_start=1 /product="protein strawberry notch isoform X4" /protein_id="XP_013105591.2" /db_xref="GeneID:106085723" /translation="MTSTKRSFDFDDAIDEDSGSDFDEDEDPDKIEVPGGGRDLQTAV TYAKNSTIKKQGHLNNNSLLISNQTGGATSAFNRNHTMPKKIQSSPSVTMGLGNFEPA PAPVASTANNTGLSSQSKMNAIVLQKIQALVAANPQFLTSGIPNQLLQQLLMQPMKTI QKQVTNTPTTVVQHEEDEADYEEMGVAETYAEYWPAKLKLGKKHPDPVVETASLSSVE PCDVYYKLSIPLDTIQSGQLSALQLESITYASQAHDHLLPDGSRAGFLIGDGAGVGKG RTIAGIIYENYMKGRKKALWISVSNDLKYDAERDLNDIGAAKIEVYALNKFKYAKINS EVNNNVKKGVIFSTYSALIGESNNKTGKYKSRLKQLLQWCGEDFDGLIIFDECHKAKN LCPVGSGKPTKTGQTVLELQNKLPRARVVYASATGASEPKNMAYMVRLGLWGQGTAFP TFNDFIAAVEKRGVGAMEIVAMDMKLRGMYIARQLSFHGVTFKIEEVTLSKDFRRIYD ESVQLWVEAMHKFIEAADLIDAESRMKKTMWGQFWSSHQRFFKYLCIAAKVNHVVHIA REAIKYGKCVVIGLQSTGEARTLEQLEREDGELTDFVSTAKGVFQSLVEKHFPAPDRN RINRILGLSEPENHKSTIQSIIAEVKAANRYKDDPSSSSTNNSSNKRKSSRSEMRNNK KSRNDSWNDSDDDDKDSDNESNNDSDFKNSESEESDAGNRSDSYESSDFNPFGASGSD SDTDPWLARAKKKKKKKTKTKDASSATAATSLGQGSMNNNNNSSNFLTLSNVSPPKKK APVSTQDKIQDLLQKKQELKGTVTPIGVHGVKMNYGPPPKDAIERACSMKEELLRKIE LLGERLPPNTLDQLIDELGGPDNVAEMTGRKGRVVQSDDGSIQYESRSEQDVPLETLN ITEKQRFMDGTKDVAIISEAASSGISLQSDRRVRNQRRRVHITLELPWSADRAIQQFG RTHRSNQVNAPEYIFLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNI DNKYGRTALETVMKAIMGYEQPLVPPPTDYHGEFFKDIANALLGVGIIVNSETTPGLL SLDKDYNNISKFLNRILGMPVDLQNRLFKYFTDTLAAIINQARKGGRFDLGILDLGAA GENVTRVKLVRFIRKHATGKAPAELHTVRVERGMIWQEAIEKYADLISENEGFYLSHQ VRNNKRTAILAVELENQPQNALQSGKKKDGKPSKKEIMFQIYRPNTGLQVRHESLAEI EKKYKKVTMSDAEKHWTEQYDASVNTCSHAYWNGNCRNVSVGAECEVGLRQRLYSVLA GSVLSVWSRVEQILAMRNANNKMQVIRMKTTEGEKIVGTLIPKSCHDLLVQDLKSDAE RVEEVNF" polyA_site 6053 /gene="LOC106085723" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttaacatcg gtgcagagta agaaccacga atttaatttg ttaattaatt tgtcaatgat 61 ctggcaagaa acgacaacaa atcatctgca gaaaacataa aacgtaaaca taacgtgcgg 121 cgggttcaca cacaagaaaa acaaaccgca agaaaatatt aagatcttac gctaaagtcg 181 taataaaagt atcggaaatg gtgttgtgtg gcaaataagc agaaaaataa gataataaat 241 aaataccaat cgtgtaaaag catagatata tagcaatctt tgcttcaaaa aaacccaaaa 301 aattccaact tcctgaaaga gttataaaaa cacaatagtc atcatatcag ttgttggtcg 361 gttagttcgg ggcgaaaaaa aaaaaagaat aacgaaaaga agcaaccaag atataatcgt 421 tgtaagtgtc tgtgttaaaa aaataagtga tttcttttga aacgtaatta agggtgaaaa 481 ttttctatag atcttcagtg tttcaaagat aaccaacaaa atgacttcaa ctaaacgttc 541 attcgatttt gatgatgcca tcgatgagga ttctggatct gattttgatg aagatgaaga 601 tccagataaa atagaagttc caggtggcgg aagagattta caaaccgctg ttacatacgc 661 caagaacagt acaattaaaa aacaaggcca cctcaataat aattccctat taatttcaaa 721 tcaaacggga ggagcaacat ctgcatttaa tagaaaccac actatgccga aaaagataca 781 aagttcaccc tcggtgacca tgggtttggg taactttgaa ccggcacctg cccctgtcgc 841 ctcaacagca aacaataccg gcctttcatc acaatccaaa atgaatgcca tagttttgca 901 aaagattcaa gctttagtcg cggcaaatcc acaattccta acaagtggta taccaaatca 961 attattgcaa cagttgctaa tgcagcccat gaagactatt caaaagcagg ttaccaatac 1021 cccaacaact gtagtacaac acgaagaaga tgaggcggat tatgaggaaa tgggggtggc 1081 agaaacctat gcggaatatt ggccagcaaa gttaaaactg ggcaagaaac atcctgatcc 1141 cgtggtggag actgcctccc tgtcttcggt agaaccctgt gatgtttact acaaactttc 1201 catacctctc gataccatac aaagtggcca attaagtgct ttgcaattgg aatccataac 1261 ctatgcttct caggcgcatg atcatctttt acccgatggc agtcgtgctg gttttctcat 1321 tggtgatggt gctggtgtgg gcaaaggtcg tacaattgct ggtattatct atgaaaacta 1381 tatgaagggg cgtaaaaagg ctttatggat atcagtatcg aatgatttga aatatgatgc 1441 cgaaagggat ttaaatgata ttggagcggc taaaattgag gtgtatgctt tgaataagtt 1501 taaatatgcc aaaatcaatt ccgaggttaa caacaatgta aagaaaggtg tcatctttag 1561 cacctactcc gcattaatcg gtgaatcgaa taacaagact ggtaaatata aatcaagact 1621 taaacaatta cttcaatggt gcggcgagga tttcgatggc ctgataattt tcgatgagtg 1681 tcacaaggcc aaaaatttgt gtcccgtggg ttcaggaaag cctacaaaaa ccggtcaaac 1741 cgtattggaa ttgcagaata aattacccag agctcgtgta gtatatgctt cggcaactgg 1801 tgcttcagaa cccaaaaaca tggcgtatat ggtgcgttta ggtttatggg gtcagggtac 1861 ggcttttccc acatttaatg atttcatagc ggctgttgag aaaagaggtg ttggagccat 1921 ggaaattgtg gccatggaca tgaaattgcg aggcatgtat atagctcgcc agctaagttt 1981 tcatggagta actttcaaaa tcgaagaagt aactttgtcc aaagattttc gccgcatcta 2041 tgatgagtcg gtacaattgt gggtagaagc catgcacaaa ttcattgagg ctgctgatct 2101 aatcgatgcc gagagtcgca tgaaaaaaac catgtggggt caattttggt cgtcacatca 2161 acgttttttc aaatatttgt gtatagctgc caaagttaat catgtcgtgc acatagctcg 2221 agaagccatt aaatatggca aatgtgtagt cataggtcta caatcgacgg gtgaagcacg 2281 tactctggaa caactggaac gagaagatgg agaacttaca gattttgtat caacagcaaa 2341 gggcgttttt caatctctag tcgaaaagca ttttccagct cccgatcgca accgcattaa 2401 tcgcatatta ggtctctctg aaccagagaa tcacaaatcc accatacaat caattattgc 2461 cgaagttaag gcagccaata gatataaaga tgatccctcc tcttcgtcca ccaataacag 2521 tagcaacaaa cgaaaatctt cacgttctga gatgcgcaac aataagaaat cgcgcaatga 2581 ttcttggaat gattccgatg atgatgataa ggattccgat aatgaatcca ataatgattc 2641 agattttaaa aattccgaat cagaagaatc ggatgccggc aatcgtagtg acagctacga 2701 atcatccgat tttaatccat ttggggcaag tggctcagac tcagatactg atccttggtt 2761 ggcccgtgcc aaaaagaaga agaaaaagaa gacgaaaacc aaggacgcat cctccgcaac 2821 agcagctaca tcattgggac aaggctccat gaataacaac aacaatagca gtaatttctt 2881 aacgctgagt aatgtttcac caccgaaaaa gaaggctccc gtctctacac aagacaaaat 2941 tcaagattta ctacagaaga aacaagaact caagggaaca gtgacaccca taggagtgca 3001 cggggtcaaa atgaattatg gtccaccgcc caaggatgcc attgagagag cctgctccat 3061 gaaagaggaa cttttgcgta aaatcgaatt actgggcgaa cgtttgccac ccaacacttt 3121 ggatcagcta atcgatgaac ttggcgggcc ggacaatgta gccgaaatga caggccgcaa 3181 aggacgtgtg gtccaatccg atgatggttc tatacagtac gaatcaagat cggaacaaga 3241 tgttcctctg gaaaccttaa acattaccga aaaacagcgc tttatggatg gcaccaaaga 3301 tgtggccatt atctcggagg ccgcctcaag tggtatttcg ctgcaaagtg atcgtcgtgt 3361 gcgcaatcag agacgacgtg tccatatcac cctcgaattg ccgtggtctg cagatcgcgc 3421 catccaacag ttcggtcgta cacatcgttc caatcaagtc aatgcacccg aatacatatt 3481 cctcatctcc gatttggcgg gtgaacgacg tttcgcctcc accgtggcca agcgtttaga 3541 atcattgggt gccttaacgc atggcgatcg tagagctact gagacgcgcg acttgtcgca 3601 attcaatatt gacaacaaat atggccgtac ggctttagaa actgtgatga aagctatcat 3661 gggctatgaa cagcccttgg tgccaccacc caccgattat cacggcgaat tctttaagga 3721 tattgccaat gccctgctag gtgtgggtat tatagttaat agtgaaacca caccgggttt 3781 gttgagcttg gacaaagact acaataatat atcgaaattt ttgaatagaa ttttgggtat 3841 gccagtagat ttgcaaaatc gtctattcaa atatttcact gataccctgg cggccattat 3901 caatcaggct cgcaagggag gacgttttga tttgggtatt ttagatttgg gagcggctgg 3961 cgagaatgta actcgagtca aactggtgcg atttatacgt aaacatgcca ctggcaaagc 4021 tcccgccgaa ttacatactg tgcgtgtgga gcgaggcatg atatggcaag aggctattga 4081 gaaatatgcc gacttaattt ctgaaaatga aggcttttat ctttcacatc aggtgcgaaa 4141 taacaaacgt actgctattt tggctgtcga attggaaaat caacctcaaa atgctttgca 4201 aagcggcaag aagaaggatg gtaagcccag taaaaaagag atcatgttcc agatttaccg 4261 tcccaatacc ggtcttcaag tacgtcatga gtcgttagct gaaatcgaaa agaaatacaa 4321 aaaagtaacc atgtcagatg ccgaaaagca ttggaccgaa caatatgatg cttcggttaa 4381 tacctgctca catgcttatt ggaatggtaa ttgccgtaat gtcagcgtgg gtgcagaatg 4441 tgaggttggt ctacgacaac gtttgtatag cgttttggct ggctctgttc tatcggtgtg 4501 gtcgcgagtg gaacaaatct tggccatgcg taatgccaat aataagatgc aagttatacg 4561 catgaaaacc acagaaggtg aaaaaattgt aggcactctc ataccgaaat catgtcatga 4621 tctattagta caggatctta agtctgatgc cgaaagggtg gaagaagtca acttctaaaa 4681 atacaaaagc aaacttttaa gttaccctaa actaaccaag gttacttttt ataaaaagta 4741 ccatacaact ggttaagaaa cacacatatt ttatttttca taattcttat taagaatatt 4801 ttttgaaaaa tattctaaaa taacaacaaa taaacacttg agttgtagta ttaaatagct 4861 acaactgtga aagaaaaaga aaaccaacaa accaaaacga cgcttaattt atggacttta 4921 tttttcattt aagtttattt ccttttttac ataattgata aataaaaaca aaaatattat 4981 tcttaaatat tacaaaaaca gaaacaaaca atccaaaata ataaaaacaa aacacagaaa 5041 aatttaaatg aaaccatata cgacttttat aattataaac taaactatac aaaaattaat 5101 tataattaat atttaattat aataacaata atgcttaatg attatacaaa aaaaaagaaa 5161 accacatttg agaaattatc ataactatag tcaataactc ttaaacaaac cggaacacac 5221 acacacacac acaaatttta aattataaac ctcaaaaaac aaatacaaga catcttaaat 5281 ggatataata tggttaaccc aaaatagcat acatgggcgg aaagtgattg taacgacaaa 5341 gaattccctc aaaaaaaaaa aaaaactctt gctgtatagt ttcccttatt aatttaaaca 5401 ggaaatgttt atttttcttc tacatttcag tttaatttct tgtttcttgc ttaatcagct 5461 ataggacttt agttattatt tttgatattc taacaacaaa ttcaattaca attgaaatta 5521 atccaattaa ttccaaaaaa aaactcttaa cattatcata atgttgatat tgaattaaat 5581 ttataattta ttgggagaaa acaaaaacaa aattttattt cgttatcgtt tccatgtttt 5641 tcaaaaacaa aaatatagaa aactgaaaat ttgattttga cttttttttt gtacaccaaa 5701 cagagcaaac tcagtaaaaa cacaaattaa gtttcgttat tttattttct ttacggagat 5761 catagtttat ttattattct taatgctatt cttactatta ttttaaatat tcattttaca 5821 aaattatttt ctaaaaccta atttttaaga aaatttctag tttgtatgta gtttcgtaga 5881 aatgaaaacc aacaacaaaa acaaaaaaaa atggaaaaaa tccaaaaaaa aaaataaata 5941 aaattctatt ttatgtttga tgtatatgta cattaatgag aactacaaac agcaacaaac 6001 aaaaataaat gaatgaatat tgaaataaaa attgaaaaat tctaaaatac aaa