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LOCUS XM_013250127 6359 bp mRNA linear INV 02-SEP-2023 (LOC106085723), transcript variant X4, mRNA. ACCESSION XM_013250127 VERSION XM_013250127.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250127.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6359 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6359 /gene="LOC106085723" /note="protein strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106085723" CDS 521..4984 /gene="LOC106085723" /codon_start=1 /product="protein strawberry notch isoform X3" /protein_id="XP_013105581.2" /db_xref="GeneID:106085723" /translation="MTSTKRSFDFDDAIDEDSGSDFDEDEDPDKIEVPGGGRDLQTAV TYAKNSTIKKQGHLNNNSLLISNQTGGATSAFNRNHTMPKKIQSSPSVGMPTSSSNAG GNPESAGGMPSFNTSQLMGMAALAAAMFNATSETKSPTNSGNMNLNIGAIGGMGSMSG GLQASTSATAASRQNSTATSISYQANSGLNKAASLLAQMTMGLGNFEPAPAPVASTAN NTGLSSQSKMNAIVLQKIQALVAANPQFLTSGIPNQLLQQLLMQPMKVTNTPTTVVQH EEDEADYEEMGVAETYAEYWPAKLKLGKKHPDPVVETASLSSVEPCDVYYKLSIPLDT IQSGQLSALQLESITYASQAHDHLLPDGSRAGFLIGDGAGVGKGRTIAGIIYENYMKG RKKALWISVSNDLKYDAERDLNDIGAAKIEVYALNKFKYAKINSEVNNNVKKGVIFST YSALIGESNNKTGKYKSRLKQLLQWCGEDFDGLIIFDECHKAKNLCPVGSGKPTKTGQ TVLELQNKLPRARVVYASATGASEPKNMAYMVRLGLWGQGTAFPTFNDFIAAVEKRGV GAMEIVAMDMKLRGMYIARQLSFHGVTFKIEEVTLSKDFRRIYDESVQLWVEAMHKFI EAADLIDAESRMKKTMWGQFWSSHQRFFKYLCIAAKVNHVVHIAREAIKYGKCVVIGL QSTGEARTLEQLEREDGELTDFVSTAKGVFQSLVEKHFPAPDRNRINRILGLSEPENH KSTIQSIIAEVKAANRYKDDPSSSSTNNSSNKRKSSRSEMRNNKKSRNDSWNDSDDDD KDSDNESNNDSDFKNSESEESDAGNRSDSYESSDFNPFGASGSDSDTDPWLARAKKKK KKKTKTKDASSATAATSLGQGSMNNNNNSSNFLTLSNVSPPKKKAPVSTQDKIQDLLQ KKQELKGTVTPIGVHGVKMNYGPPPKDAIERACSMKEELLRKIELLGERLPPNTLDQL IDELGGPDNVAEMTGRKGRVVQSDDGSIQYESRSEQDVPLETLNITEKQRFMDGTKDV AIISEAASSGISLQSDRRVRNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYI FLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRTALETVMK AIMGYEQPLVPPPTDYHGEFFKDIANALLGVGIIVNSETTPGLLSLDKDYNNISKFLN RILGMPVDLQNRLFKYFTDTLAAIINQARKGGRFDLGILDLGAAGENVTRVKLVRFIR KHATGKAPAELHTVRVERGMIWQEAIEKYADLISENEGFYLSHQVRNNKRTAILAVEL ENQPQNALQSGKKKDGKPSKKEIMFQIYRPNTGLQVRHESLAEIEKKYKKVTMSDAEK HWTEQYDASVNTCSHAYWNGNCRNVSVGAECEVGLRQRLYSVLAGSVLSVWSRVEQIL AMRNANNKMQVIRMKTTEGEKIVGTLIPKSCHDLLVQDLKSDAERVEEVNF" polyA_site 6359 /gene="LOC106085723" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttaacatcg gtgcagagta agaaccacga atttaatttg ttaattaatt tgtcaatgat 61 ctggcaagaa acgacaacaa atcatctgca gaaaacataa aacgtaaaca taacgtgcgg 121 cgggttcaca cacaagaaaa acaaaccgca agaaaatatt aagatcttac gctaaagtcg 181 taataaaagt atcggaaatg gtgttgtgtg gcaaataagc agaaaaataa gataataaat 241 aaataccaat cgtgtaaaag catagatata tagcaatctt tgcttcaaaa aaacccaaaa 301 aattccaact tcctgaaaga gttataaaaa cacaatagtc atcatatcag ttgttggtcg 361 gttagttcgg ggcgaaaaaa aaaaaagaat aacgaaaaga agcaaccaag atataatcgt 421 tgtaagtgtc tgtgttaaaa aaataagtga tttcttttga aacgtaatta agggtgaaaa 481 ttttctatag atcttcagtg tttcaaagat aaccaacaaa atgacttcaa ctaaacgttc 541 attcgatttt gatgatgcca tcgatgagga ttctggatct gattttgatg aagatgaaga 601 tccagataaa atagaagttc caggtggcgg aagagattta caaaccgctg ttacatacgc 661 caagaacagt acaattaaaa aacaaggcca cctcaataat aattccctat taatttcaaa 721 tcaaacggga ggagcaacat ctgcatttaa tagaaaccac actatgccga aaaagataca 781 aagttcaccc tcggtcggta tgcccacaag tagttcaaat gctggcggaa atcccgaatc 841 ggcaggtggt atgccatcat ttaatacctc acaattaatg ggcatggctg ctttagctgc 901 agccatgttc aatgcaacca gtgaaaccaa atcccctaca aattctggaa acatgaactt 961 aaatatagga gctattggtg gtatgggaag catgagtgga ggccttcaag cttcaacatc 1021 agccactgct gcttcaagac aaaactctac agcaacctct attagttatc aggcaaattc 1081 tggtcttaat aaagccgcct ctttgttggc gcagatgacc atgggtttgg gtaactttga 1141 accggcacct gcccctgtcg cctcaacagc aaacaatacc ggcctttcat cacaatccaa 1201 aatgaatgcc atagttttgc aaaagattca agctttagtc gcggcaaatc cacaattcct 1261 aacaagtggt ataccaaatc aattattgca acagttgcta atgcagccca tgaaggttac 1321 caatacccca acaactgtag tacaacacga agaagatgag gcggattatg aggaaatggg 1381 ggtggcagaa acctatgcgg aatattggcc agcaaagtta aaactgggca agaaacatcc 1441 tgatcccgtg gtggagactg cctccctgtc ttcggtagaa ccctgtgatg tttactacaa 1501 actttccata cctctcgata ccatacaaag tggccaatta agtgctttgc aattggaatc 1561 cataacctat gcttctcagg cgcatgatca tcttttaccc gatggcagtc gtgctggttt 1621 tctcattggt gatggtgctg gtgtgggcaa aggtcgtaca attgctggta ttatctatga 1681 aaactatatg aaggggcgta aaaaggcttt atggatatca gtatcgaatg atttgaaata 1741 tgatgccgaa agggatttaa atgatattgg agcggctaaa attgaggtgt atgctttgaa 1801 taagtttaaa tatgccaaaa tcaattccga ggttaacaac aatgtaaaga aaggtgtcat 1861 ctttagcacc tactccgcat taatcggtga atcgaataac aagactggta aatataaatc 1921 aagacttaaa caattacttc aatggtgcgg cgaggatttc gatggcctga taattttcga 1981 tgagtgtcac aaggccaaaa atttgtgtcc cgtgggttca ggaaagccta caaaaaccgg 2041 tcaaaccgta ttggaattgc agaataaatt acccagagct cgtgtagtat atgcttcggc 2101 aactggtgct tcagaaccca aaaacatggc gtatatggtg cgtttaggtt tatggggtca 2161 gggtacggct tttcccacat ttaatgattt catagcggct gttgagaaaa gaggtgttgg 2221 agccatggaa attgtggcca tggacatgaa attgcgaggc atgtatatag ctcgccagct 2281 aagttttcat ggagtaactt tcaaaatcga agaagtaact ttgtccaaag attttcgccg 2341 catctatgat gagtcggtac aattgtgggt agaagccatg cacaaattca ttgaggctgc 2401 tgatctaatc gatgccgaga gtcgcatgaa aaaaaccatg tggggtcaat tttggtcgtc 2461 acatcaacgt tttttcaaat atttgtgtat agctgccaaa gttaatcatg tcgtgcacat 2521 agctcgagaa gccattaaat atggcaaatg tgtagtcata ggtctacaat cgacgggtga 2581 agcacgtact ctggaacaac tggaacgaga agatggagaa cttacagatt ttgtatcaac 2641 agcaaagggc gtttttcaat ctctagtcga aaagcatttt ccagctcccg atcgcaaccg 2701 cattaatcgc atattaggtc tctctgaacc agagaatcac aaatccacca tacaatcaat 2761 tattgccgaa gttaaggcag ccaatagata taaagatgat ccctcctctt cgtccaccaa 2821 taacagtagc aacaaacgaa aatcttcacg ttctgagatg cgcaacaata agaaatcgcg 2881 caatgattct tggaatgatt ccgatgatga tgataaggat tccgataatg aatccaataa 2941 tgattcagat tttaaaaatt ccgaatcaga agaatcggat gccggcaatc gtagtgacag 3001 ctacgaatca tccgatttta atccatttgg ggcaagtggc tcagactcag atactgatcc 3061 ttggttggcc cgtgccaaaa agaagaagaa aaagaagacg aaaaccaagg acgcatcctc 3121 cgcaacagca gctacatcat tgggacaagg ctccatgaat aacaacaaca atagcagtaa 3181 tttcttaacg ctgagtaatg tttcaccacc gaaaaagaag gctcccgtct ctacacaaga 3241 caaaattcaa gatttactac agaagaaaca agaactcaag ggaacagtga cacccatagg 3301 agtgcacggg gtcaaaatga attatggtcc accgcccaag gatgccattg agagagcctg 3361 ctccatgaaa gaggaacttt tgcgtaaaat cgaattactg ggcgaacgtt tgccacccaa 3421 cactttggat cagctaatcg atgaacttgg cgggccggac aatgtagccg aaatgacagg 3481 ccgcaaagga cgtgtggtcc aatccgatga tggttctata cagtacgaat caagatcgga 3541 acaagatgtt cctctggaaa ccttaaacat taccgaaaaa cagcgcttta tggatggcac 3601 caaagatgtg gccattatct cggaggccgc ctcaagtggt atttcgctgc aaagtgatcg 3661 tcgtgtgcgc aatcagagac gacgtgtcca tatcaccctc gaattgccgt ggtctgcaga 3721 tcgcgccatc caacagttcg gtcgtacaca tcgttccaat caagtcaatg cacccgaata 3781 catattcctc atctccgatt tggcgggtga acgacgtttc gcctccaccg tggccaagcg 3841 tttagaatca ttgggtgcct taacgcatgg cgatcgtaga gctactgaga cgcgcgactt 3901 gtcgcaattc aatattgaca acaaatatgg ccgtacggct ttagaaactg tgatgaaagc 3961 tatcatgggc tatgaacagc ccttggtgcc accacccacc gattatcacg gcgaattctt 4021 taaggatatt gccaatgccc tgctaggtgt gggtattata gttaatagtg aaaccacacc 4081 gggtttgttg agcttggaca aagactacaa taatatatcg aaatttttga atagaatttt 4141 gggtatgcca gtagatttgc aaaatcgtct attcaaatat ttcactgata ccctggcggc 4201 cattatcaat caggctcgca agggaggacg ttttgatttg ggtattttag atttgggagc 4261 ggctggcgag aatgtaactc gagtcaaact ggtgcgattt atacgtaaac atgccactgg 4321 caaagctccc gccgaattac atactgtgcg tgtggagcga ggcatgatat ggcaagaggc 4381 tattgagaaa tatgccgact taatttctga aaatgaaggc ttttatcttt cacatcaggt 4441 gcgaaataac aaacgtactg ctattttggc tgtcgaattg gaaaatcaac ctcaaaatgc 4501 tttgcaaagc ggcaagaaga aggatggtaa gcccagtaaa aaagagatca tgttccagat 4561 ttaccgtccc aataccggtc ttcaagtacg tcatgagtcg ttagctgaaa tcgaaaagaa 4621 atacaaaaaa gtaaccatgt cagatgccga aaagcattgg accgaacaat atgatgcttc 4681 ggttaatacc tgctcacatg cttattggaa tggtaattgc cgtaatgtca gcgtgggtgc 4741 agaatgtgag gttggtctac gacaacgttt gtatagcgtt ttggctggct ctgttctatc 4801 ggtgtggtcg cgagtggaac aaatcttggc catgcgtaat gccaataata agatgcaagt 4861 tatacgcatg aaaaccacag aaggtgaaaa aattgtaggc actctcatac cgaaatcatg 4921 tcatgatcta ttagtacagg atcttaagtc tgatgccgaa agggtggaag aagtcaactt 4981 ctaaaaatac aaaagcaaac ttttaagtta ccctaaacta accaaggtta ctttttataa 5041 aaagtaccat acaactggtt aagaaacaca catattttat ttttcataat tcttattaag 5101 aatatttttt gaaaaatatt ctaaaataac aacaaataaa cacttgagtt gtagtattaa 5161 atagctacaa ctgtgaaaga aaaagaaaac caacaaacca aaacgacgct taatttatgg 5221 actttatttt tcatttaagt ttatttcctt ttttacataa ttgataaata aaaacaaaaa 5281 tattattctt aaatattaca aaaacagaaa caaacaatcc aaaataataa aaacaaaaca 5341 cagaaaaatt taaatgaaac catatacgac ttttataatt ataaactaaa ctatacaaaa 5401 attaattata attaatattt aattataata acaataatgc ttaatgatta tacaaaaaaa 5461 aagaaaacca catttgagaa attatcataa ctatagtcaa taactcttaa acaaaccgga 5521 acacacacac acacacacaa attttaaatt ataaacctca aaaaacaaat acaagacatc 5581 ttaaatggat ataatatggt taacccaaaa tagcatacat gggcggaaag tgattgtaac 5641 gacaaagaat tccctcaaaa aaaaaaaaaa actcttgctg tatagtttcc cttattaatt 5701 taaacaggaa atgtttattt ttcttctaca tttcagttta atttcttgtt tcttgcttaa 5761 tcagctatag gactttagtt attatttttg atattctaac aacaaattca attacaattg 5821 aaattaatcc aattaattcc aaaaaaaaac tcttaacatt atcataatgt tgatattgaa 5881 ttaaatttat aatttattgg gagaaaacaa aaacaaaatt ttatttcgtt atcgtttcca 5941 tgtttttcaa aaacaaaaat atagaaaact gaaaatttga ttttgacttt ttttttgtac 6001 accaaacaga gcaaactcag taaaaacaca aattaagttt cgttatttta ttttctttac 6061 ggagatcata gtttatttat tattcttaat gctattctta ctattatttt aaatattcat 6121 tttacaaaat tattttctaa aacctaattt ttaagaaaat ttctagtttg tatgtagttt 6181 cgtagaaatg aaaaccaaca acaaaaacaa aaaaaaatgg aaaaaatcca aaaaaaaaaa 6241 taaataaaat tctattttat gtttgatgta tatgtacatt aatgagaact acaaacagca 6301 acaaacaaaa ataaatgaat gaatattgaa ataaaaattg aaaaattcta aaatacaaa