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LOCUS XM_013250119 6362 bp mRNA linear INV 02-SEP-2023 (LOC106085723), transcript variant X3, mRNA. ACCESSION XM_013250119 VERSION XM_013250119.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250119.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6362 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6362 /gene="LOC106085723" /note="protein strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106085723" CDS 521..4987 /gene="LOC106085723" /codon_start=1 /product="protein strawberry notch isoform X2" /protein_id="XP_013105573.2" /db_xref="GeneID:106085723" /translation="MTSTKRSFDFDDAIDEDSGSDFDEDEDPDKIEVPGGGRDLQTAV TYAKNSTIKKQGHLNNNSLLISNQTGGATSAFNRNHTMPKKIQSSPSVGMPTSSSNAG GNPESAGGMPSFNTSQLMGMAALAAAMFNATSETKSPTNSGNMNLNIGAIGGMGSMSG GLQASTSATAASRQNSTATSISYQANSGLNKAASLLAQMTMGLGNFEPAPAPVASTAN NTGLSSQSKMNAIVLQKIQALVAANPQFLTSGIPNQLLQQLLMQPMKQVTNTPTTVVQ HEEDEADYEEMGVAETYAEYWPAKLKLGKKHPDPVVETASLSSVEPCDVYYKLSIPLD TIQSGQLSALQLESITYASQAHDHLLPDGSRAGFLIGDGAGVGKGRTIAGIIYENYMK GRKKALWISVSNDLKYDAERDLNDIGAAKIEVYALNKFKYAKINSEVNNNVKKGVIFS TYSALIGESNNKTGKYKSRLKQLLQWCGEDFDGLIIFDECHKAKNLCPVGSGKPTKTG QTVLELQNKLPRARVVYASATGASEPKNMAYMVRLGLWGQGTAFPTFNDFIAAVEKRG VGAMEIVAMDMKLRGMYIARQLSFHGVTFKIEEVTLSKDFRRIYDESVQLWVEAMHKF IEAADLIDAESRMKKTMWGQFWSSHQRFFKYLCIAAKVNHVVHIAREAIKYGKCVVIG LQSTGEARTLEQLEREDGELTDFVSTAKGVFQSLVEKHFPAPDRNRINRILGLSEPEN HKSTIQSIIAEVKAANRYKDDPSSSSTNNSSNKRKSSRSEMRNNKKSRNDSWNDSDDD DKDSDNESNNDSDFKNSESEESDAGNRSDSYESSDFNPFGASGSDSDTDPWLARAKKK KKKKTKTKDASSATAATSLGQGSMNNNNNSSNFLTLSNVSPPKKKAPVSTQDKIQDLL QKKQELKGTVTPIGVHGVKMNYGPPPKDAIERACSMKEELLRKIELLGERLPPNTLDQ LIDELGGPDNVAEMTGRKGRVVQSDDGSIQYESRSEQDVPLETLNITEKQRFMDGTKD VAIISEAASSGISLQSDRRVRNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEY IFLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRTALETVM KAIMGYEQPLVPPPTDYHGEFFKDIANALLGVGIIVNSETTPGLLSLDKDYNNISKFL NRILGMPVDLQNRLFKYFTDTLAAIINQARKGGRFDLGILDLGAAGENVTRVKLVRFI RKHATGKAPAELHTVRVERGMIWQEAIEKYADLISENEGFYLSHQVRNNKRTAILAVE LENQPQNALQSGKKKDGKPSKKEIMFQIYRPNTGLQVRHESLAEIEKKYKKVTMSDAE KHWTEQYDASVNTCSHAYWNGNCRNVSVGAECEVGLRQRLYSVLAGSVLSVWSRVEQI LAMRNANNKMQVIRMKTTEGEKIVGTLIPKSCHDLLVQDLKSDAERVEEVNF" polyA_site 6362 /gene="LOC106085723" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttaacatcg gtgcagagta agaaccacga atttaatttg ttaattaatt tgtcaatgat 61 ctggcaagaa acgacaacaa atcatctgca gaaaacataa aacgtaaaca taacgtgcgg 121 cgggttcaca cacaagaaaa acaaaccgca agaaaatatt aagatcttac gctaaagtcg 181 taataaaagt atcggaaatg gtgttgtgtg gcaaataagc agaaaaataa gataataaat 241 aaataccaat cgtgtaaaag catagatata tagcaatctt tgcttcaaaa aaacccaaaa 301 aattccaact tcctgaaaga gttataaaaa cacaatagtc atcatatcag ttgttggtcg 361 gttagttcgg ggcgaaaaaa aaaaaagaat aacgaaaaga agcaaccaag atataatcgt 421 tgtaagtgtc tgtgttaaaa aaataagtga tttcttttga aacgtaatta agggtgaaaa 481 ttttctatag atcttcagtg tttcaaagat aaccaacaaa atgacttcaa ctaaacgttc 541 attcgatttt gatgatgcca tcgatgagga ttctggatct gattttgatg aagatgaaga 601 tccagataaa atagaagttc caggtggcgg aagagattta caaaccgctg ttacatacgc 661 caagaacagt acaattaaaa aacaaggcca cctcaataat aattccctat taatttcaaa 721 tcaaacggga ggagcaacat ctgcatttaa tagaaaccac actatgccga aaaagataca 781 aagttcaccc tcggtcggta tgcccacaag tagttcaaat gctggcggaa atcccgaatc 841 ggcaggtggt atgccatcat ttaatacctc acaattaatg ggcatggctg ctttagctgc 901 agccatgttc aatgcaacca gtgaaaccaa atcccctaca aattctggaa acatgaactt 961 aaatatagga gctattggtg gtatgggaag catgagtgga ggccttcaag cttcaacatc 1021 agccactgct gcttcaagac aaaactctac agcaacctct attagttatc aggcaaattc 1081 tggtcttaat aaagccgcct ctttgttggc gcagatgacc atgggtttgg gtaactttga 1141 accggcacct gcccctgtcg cctcaacagc aaacaatacc ggcctttcat cacaatccaa 1201 aatgaatgcc atagttttgc aaaagattca agctttagtc gcggcaaatc cacaattcct 1261 aacaagtggt ataccaaatc aattattgca acagttgcta atgcagccca tgaagcaggt 1321 taccaatacc ccaacaactg tagtacaaca cgaagaagat gaggcggatt atgaggaaat 1381 gggggtggca gaaacctatg cggaatattg gccagcaaag ttaaaactgg gcaagaaaca 1441 tcctgatccc gtggtggaga ctgcctccct gtcttcggta gaaccctgtg atgtttacta 1501 caaactttcc atacctctcg ataccataca aagtggccaa ttaagtgctt tgcaattgga 1561 atccataacc tatgcttctc aggcgcatga tcatctttta cccgatggca gtcgtgctgg 1621 ttttctcatt ggtgatggtg ctggtgtggg caaaggtcgt acaattgctg gtattatcta 1681 tgaaaactat atgaaggggc gtaaaaaggc tttatggata tcagtatcga atgatttgaa 1741 atatgatgcc gaaagggatt taaatgatat tggagcggct aaaattgagg tgtatgcttt 1801 gaataagttt aaatatgcca aaatcaattc cgaggttaac aacaatgtaa agaaaggtgt 1861 catctttagc acctactccg cattaatcgg tgaatcgaat aacaagactg gtaaatataa 1921 atcaagactt aaacaattac ttcaatggtg cggcgaggat ttcgatggcc tgataatttt 1981 cgatgagtgt cacaaggcca aaaatttgtg tcccgtgggt tcaggaaagc ctacaaaaac 2041 cggtcaaacc gtattggaat tgcagaataa attacccaga gctcgtgtag tatatgcttc 2101 ggcaactggt gcttcagaac ccaaaaacat ggcgtatatg gtgcgtttag gtttatgggg 2161 tcagggtacg gcttttccca catttaatga tttcatagcg gctgttgaga aaagaggtgt 2221 tggagccatg gaaattgtgg ccatggacat gaaattgcga ggcatgtata tagctcgcca 2281 gctaagtttt catggagtaa ctttcaaaat cgaagaagta actttgtcca aagattttcg 2341 ccgcatctat gatgagtcgg tacaattgtg ggtagaagcc atgcacaaat tcattgaggc 2401 tgctgatcta atcgatgccg agagtcgcat gaaaaaaacc atgtggggtc aattttggtc 2461 gtcacatcaa cgttttttca aatatttgtg tatagctgcc aaagttaatc atgtcgtgca 2521 catagctcga gaagccatta aatatggcaa atgtgtagtc ataggtctac aatcgacggg 2581 tgaagcacgt actctggaac aactggaacg agaagatgga gaacttacag attttgtatc 2641 aacagcaaag ggcgtttttc aatctctagt cgaaaagcat tttccagctc ccgatcgcaa 2701 ccgcattaat cgcatattag gtctctctga accagagaat cacaaatcca ccatacaatc 2761 aattattgcc gaagttaagg cagccaatag atataaagat gatccctcct cttcgtccac 2821 caataacagt agcaacaaac gaaaatcttc acgttctgag atgcgcaaca ataagaaatc 2881 gcgcaatgat tcttggaatg attccgatga tgatgataag gattccgata atgaatccaa 2941 taatgattca gattttaaaa attccgaatc agaagaatcg gatgccggca atcgtagtga 3001 cagctacgaa tcatccgatt ttaatccatt tggggcaagt ggctcagact cagatactga 3061 tccttggttg gcccgtgcca aaaagaagaa gaaaaagaag acgaaaacca aggacgcatc 3121 ctccgcaaca gcagctacat cattgggaca aggctccatg aataacaaca acaatagcag 3181 taatttctta acgctgagta atgtttcacc accgaaaaag aaggctcccg tctctacaca 3241 agacaaaatt caagatttac tacagaagaa acaagaactc aagggaacag tgacacccat 3301 aggagtgcac ggggtcaaaa tgaattatgg tccaccgccc aaggatgcca ttgagagagc 3361 ctgctccatg aaagaggaac ttttgcgtaa aatcgaatta ctgggcgaac gtttgccacc 3421 caacactttg gatcagctaa tcgatgaact tggcgggccg gacaatgtag ccgaaatgac 3481 aggccgcaaa ggacgtgtgg tccaatccga tgatggttct atacagtacg aatcaagatc 3541 ggaacaagat gttcctctgg aaaccttaaa cattaccgaa aaacagcgct ttatggatgg 3601 caccaaagat gtggccatta tctcggaggc cgcctcaagt ggtatttcgc tgcaaagtga 3661 tcgtcgtgtg cgcaatcaga gacgacgtgt ccatatcacc ctcgaattgc cgtggtctgc 3721 agatcgcgcc atccaacagt tcggtcgtac acatcgttcc aatcaagtca atgcacccga 3781 atacatattc ctcatctccg atttggcggg tgaacgacgt ttcgcctcca ccgtggccaa 3841 gcgtttagaa tcattgggtg ccttaacgca tggcgatcgt agagctactg agacgcgcga 3901 cttgtcgcaa ttcaatattg acaacaaata tggccgtacg gctttagaaa ctgtgatgaa 3961 agctatcatg ggctatgaac agcccttggt gccaccaccc accgattatc acggcgaatt 4021 ctttaaggat attgccaatg ccctgctagg tgtgggtatt atagttaata gtgaaaccac 4081 accgggtttg ttgagcttgg acaaagacta caataatata tcgaaatttt tgaatagaat 4141 tttgggtatg ccagtagatt tgcaaaatcg tctattcaaa tatttcactg ataccctggc 4201 ggccattatc aatcaggctc gcaagggagg acgttttgat ttgggtattt tagatttggg 4261 agcggctggc gagaatgtaa ctcgagtcaa actggtgcga tttatacgta aacatgccac 4321 tggcaaagct cccgccgaat tacatactgt gcgtgtggag cgaggcatga tatggcaaga 4381 ggctattgag aaatatgccg acttaatttc tgaaaatgaa ggcttttatc tttcacatca 4441 ggtgcgaaat aacaaacgta ctgctatttt ggctgtcgaa ttggaaaatc aacctcaaaa 4501 tgctttgcaa agcggcaaga agaaggatgg taagcccagt aaaaaagaga tcatgttcca 4561 gatttaccgt cccaataccg gtcttcaagt acgtcatgag tcgttagctg aaatcgaaaa 4621 gaaatacaaa aaagtaacca tgtcagatgc cgaaaagcat tggaccgaac aatatgatgc 4681 ttcggttaat acctgctcac atgcttattg gaatggtaat tgccgtaatg tcagcgtggg 4741 tgcagaatgt gaggttggtc tacgacaacg tttgtatagc gttttggctg gctctgttct 4801 atcggtgtgg tcgcgagtgg aacaaatctt ggccatgcgt aatgccaata ataagatgca 4861 agttatacgc atgaaaacca cagaaggtga aaaaattgta ggcactctca taccgaaatc 4921 atgtcatgat ctattagtac aggatcttaa gtctgatgcc gaaagggtgg aagaagtcaa 4981 cttctaaaaa tacaaaagca aacttttaag ttaccctaaa ctaaccaagg ttacttttta 5041 taaaaagtac catacaactg gttaagaaac acacatattt tatttttcat aattcttatt 5101 aagaatattt tttgaaaaat attctaaaat aacaacaaat aaacacttga gttgtagtat 5161 taaatagcta caactgtgaa agaaaaagaa aaccaacaaa ccaaaacgac gcttaattta 5221 tggactttat ttttcattta agtttatttc cttttttaca taattgataa ataaaaacaa 5281 aaatattatt cttaaatatt acaaaaacag aaacaaacaa tccaaaataa taaaaacaaa 5341 acacagaaaa atttaaatga aaccatatac gacttttata attataaact aaactataca 5401 aaaattaatt ataattaata tttaattata ataacaataa tgcttaatga ttatacaaaa 5461 aaaaagaaaa ccacatttga gaaattatca taactatagt caataactct taaacaaacc 5521 ggaacacaca cacacacaca caaattttaa attataaacc tcaaaaaaca aatacaagac 5581 atcttaaatg gatataatat ggttaaccca aaatagcata catgggcgga aagtgattgt 5641 aacgacaaag aattccctca aaaaaaaaaa aaaactcttg ctgtatagtt tcccttatta 5701 atttaaacag gaaatgttta tttttcttct acatttcagt ttaatttctt gtttcttgct 5761 taatcagcta taggacttta gttattattt ttgatattct aacaacaaat tcaattacaa 5821 ttgaaattaa tccaattaat tccaaaaaaa aactcttaac attatcataa tgttgatatt 5881 gaattaaatt tataatttat tgggagaaaa caaaaacaaa attttatttc gttatcgttt 5941 ccatgttttt caaaaacaaa aatatagaaa actgaaaatt tgattttgac tttttttttg 6001 tacaccaaac agagcaaact cagtaaaaac acaaattaag tttcgttatt ttattttctt 6061 tacggagatc atagtttatt tattattctt aatgctattc ttactattat tttaaatatt 6121 cattttacaa aattattttc taaaacctaa tttttaagaa aatttctagt ttgtatgtag 6181 tttcgtagaa atgaaaacca acaacaaaaa caaaaaaaaa tggaaaaaat ccaaaaaaaa 6241 aaataaataa aattctattt tatgtttgat gtatatgtac attaatgaga actacaaaca 6301 gcaacaaaca aaaataaatg aatgaatatt gaaataaaaa ttgaaaaatt ctaaaataca 6361 aa