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LOCUS XM_013250116 4314 bp mRNA linear INV 02-SEP-2023 hydrolase 16 (LOC106085729), transcript variant X3, mRNA. ACCESSION XM_013250116 VERSION XM_013250116.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250116.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4314 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4314 /gene="LOC106085729" /note="ubiquitin carboxyl-terminal hydrolase 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins" /db_xref="GeneID:106085729" CDS 152..3391 /gene="LOC106085729" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase 16" /protein_id="XP_013105570.1" /db_xref="GeneID:106085729" /translation="MGKNHQPENWDGGSSDSSEGKTSPTAATRSCPHLKRAVDSGKLR KLLKGTGLLLDCGECQKMGVTSPAAEALENSVESPIGSFEYDNTLWLCLKCGSQLCGR AKNQHALQHYKTPRSDLHAVAMNTRSFEIWCYQCDSDIKPDSRKNLLECVEFVKGLAQ KPPVAVPAENIENMLRGTLESLRPLVPTDDANPFYAGPVAAAASVNNNTNTITGNNKA IPLPPPPLPPIPGMAKRTSNFNNFSAIITTGNSSATATTPAMKLTSNNIFGDSLPRVR GLTNLGNTCFFNAVMQCLAQTPYLLDVLKESAEPGEEFTLPGGTFESKEDEVLNLPPI KGSLCAWGGLTSALAQTLDELQSGGGVFNPSKLFDKLCAKCPQFQGGDQHDSHELLRH LLESVRAEDLKRYQRVILNNLGYKDQDVKSVSEDMKKKCKIYGNQAADRILRPEQVFR GFLVSTLTCQDCYNVSSRHEYFLDMSLPVSVEKSQPPQMRRKTSPDNSNSFYLHPAPA TSPTGPTKAQLKKEQKKERKAKRHAKHQHTKQMQKQFSAEAGISTVGGDNVSEAGVVD AAKAVLIGCATREEAAGEKDKTTWSASSSSAEQSDADVEDNLLDDNEKSSTKPLNTSI IGKTAAPNYDRSGNNQSFTSPVEKRDDSPENMDKDSLDEDENDSGIATSPANAGGSFP ASSASNSETNGDAMAPGDSKATNSVFSLGLNEKGANLVKQLTLNETNFPTKTALTNGD VKPNENADQSDIQSIVSQLDSLTINNDEQQQNKAARAKAKRSRTQSYSDWSTTIAPRY QCEDGECSVQSCLNSFTAVELMTGNNKVGCEACTKRINGDDPKAKTVNTNATKQFLIS SPPAVLILHLKRFQLGPRCMFRKLTRPVSFPMILDIAPFCGSKVKNLPNIDRKQKKLL YALYGVVEHSGSMYGGHYTAYVKVRPKLSQEDKRWKFIPQGSKAELDQDDEQRKKLDE LLAREKARDLRMKAANDSDDFSNSCSSSSDSSNTSSSSEPEESSIPPSPMSPCPNETA GAVGGIDETINVQVPMGKWYYVSDSRVSDASESEVLNAQAYLLFYERIY" misc_feature 416..583 /gene="LOC106085729" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" misc_feature <944..2962 /gene="LOC106085729" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 980..>1609 /gene="LOC106085729" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <2537..3379 /gene="LOC106085729" /note="A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19K; cd02667" /db_xref="CDD:239132" ORIGIN 1 aagaataaaa ctgtggggca catacacatg tacccgcaac caaccccaca gacaaacacg 61 ggctcggaca atggcaaaca gcaccacaca cagaaaatca caatttgaag gtactttaag 121 ccgacaaaca gagacgccat aattgaaagt catgggcaag aatcatcaac ccgaaaactg 181 ggatggtggt tcctcagatt catcggaggg taagactagt cccacggcgg caacacgttc 241 ttgtccccat ttaaaaaggg cggttgattc gggcaaatta cgcaaactat taaagggcac 301 tggactcctg ttggattgtg gcgaatgtca gaaaatgggc gttacttcac cagcggctga 361 agcactggaa aattctgttg aatcaccaat tggtagcttt gaatacgaca ataccctgtg 421 gttgtgcttg aaatgtggtt cacaactatg cggtcgcgcc aagaatcaac atgctcttca 481 acactataag actccacgct cagatctaca tgcagtggca atgaatacaa ggtcctttga 541 aatttggtgc tatcaatgcg acagcgatat taaaccggac tcacggaaaa atctcttaga 601 gtgtgtggaa tttgtcaaag gtttagccca aaaaccacct gtagctgttc cagcggagaa 661 cattgaaaac atgttacgag gcacgttgga atccttacgt ccattggtgc caactgacga 721 tgccaaccca ttttatgctg gcccagttgc agctgcagcc tcagttaata acaacactaa 781 caccattaca ggaaataata aagctatacc attgccacca ccacctttgc ctccaatacc 841 gggaatggct aaacgtacaa gcaactttaa taatttttcg gcaattatta cgacaggaaa 901 tagcagcgcc acagccacta ctccagctat gaaattaaca tctaacaata tttttggaga 961 ttctttgcca cgggttcgag ggcttaccaa tttgggcaat acatgctttt tcaatgccgt 1021 tatgcagtgt ttggctcaaa cgccctattt gttggacgtc ttaaaggaat cggccgagcc 1081 tggagaagag ttcactttgc ccggtggtac ttttgagtcc aaagaggatg aagttctcaa 1141 tttgccacct attaagggtt cgttgtgtgc atggggtggt ttaacttcag ctttggccca 1201 gactttggat gagttgcaat ctggaggtgg agtttttaat ccaagcaaac tttttgataa 1261 actttgcgcc aaatgtccac aatttcaggg tggtgatcag catgattctc acgaacttct 1321 gagacattta ctagagagcg tgagagcaga ggatttaaaa cgttaccaac gggtcattct 1381 taataatctt ggctacaaag atcaggatgt taaatccgtt tctgaagata tgaaaaagaa 1441 atgtaaaatt tatggcaatc aagcagccga tcggattctg aggcctgaac aagtttttcg 1501 cggatttctg gtatccaccc tcacctgtca agactgctac aatgtcagtt cgaggcatga 1561 atatttcctc gatatgtcac ttcccgtcag cgtagaaaag tcgcaacctc ctcaaatgcg 1621 acgcaaaact tcaccagaca attccaattc attttatttg catcctgcgc ctgctacatc 1681 acctacggga ccgacaaagg cccaactgaa aaaggaacag aaaaaagaac gcaaagccaa 1741 gcgtcatgcc aaacaccagc acacaaaaca aatgcaaaaa caattctctg ctgaggccgg 1801 aatctcgaca gtcggtgggg ataatgttag tgaagcgggt gtcgtggatg cggctaaggc 1861 cgtacttatt ggttgtgcta caagggaaga ggctgctggg gaaaaggata agacaacctg 1921 gtcagcttca tcatcctcag ccgagcaatc agatgccgat gtagaagata atttgttgga 1981 tgacaatgag aaaagctcta caaaaccact taatacctca attattggaa aaacagcggc 2041 gccaaattac gatcgcagtg gcaacaatca atcttttacg agtcctgttg agaaacggga 2101 tgattcaccg gaaaacatgg acaaagactc actggatgaa gatgaaaatg attccggcat 2161 tgctacaagt cctgccaatg caggtggaag cttccctgct tcatctgcct cgaattcaga 2221 aacaaatggt gatgcaatgg caccaggtga ttccaaagcc actaatagcg ttttctcttt 2281 ggggctcaac gagaaaggag caaatcttgt aaaacaacta accctcaatg aaaccaattt 2341 ccctacgaag acagctctta caaatggtga tgtgaagccc aatgagaatg ctgaccagtc 2401 tgatatacaa tccatagtca gtcagttaga tagtttgaca attaacaatg atgaacaaca 2461 acaaaataag gctgcacgtg ccaaggcgaa acgttcgcgt acacaaagtt attcggactg 2521 gagtacaacc attgctccgc gatatcaatg cgaagatgga gaatgttcag tgcagtcgtg 2581 tctgaacagt tttactgctg tcgaattgat gacgggcaac aacaaggtgg gctgtgaggc 2641 ctgtacgaaa cgtataaacg gtgacgatcc caaagccaaa acggtcaaca ccaatgccac 2701 taaacagttc cttatctcta gtccaccagc tgtactcata ttgcatttga agcgttttca 2761 attgggccct cgttgcatgt tccgcaaact gacacgacct gtcagttttc ccatgatact 2821 cgatatagct ccgttctgtg gttctaaggt taagaatctt cccaacatcg atcgtaaaca 2881 gaaaaagctt ttgtacgctc tctacggagt agttgaacat tcaggaagca tgtacggtgg 2941 ccattacacg gcctacgtca aggtgcgacc gaaactatcg caagaggata aacgttggaa 3001 attcatacca caaggcagca aagctgagct cgatcaagac gatgaacaac gcaaaaagtt 3061 ggacgaactt ttggcacgag aaaaggcgcg tgatctgcgc atgaaagcag ccaatgatag 3121 tgatgacttt tccaattcat gcagtagcag ctcggattct tccaacacgt catcctcttc 3181 tgaacctgaa gaatcatcca taccgccatc accgatgtcg ccatgtccca atgagaccgc 3241 tggtgctgtt ggtggaattg atgagacaat aaacgttcag gtgccaatgg gcaaatggta 3301 ctatgtttcc gattcccgag tatcagatgc cagcgaaagt gaagttttaa atgctcaggc 3361 ctatttgctg ttttacgaac gcatttacta agaaaagttg tgttaaaaat atatcttcga 3421 aaatattgca gaatgggtcg tattccgcat gctggacgct aaacagttag atagttctcc 3481 cttaaccgtt tcaacgaatg cctaggaatg ggaaacttat taaaaaaaaa cacacacata 3541 gaacaaaggg tggttttttt tatattgaac atgctaataa aaccaaccat aataacgatg 3601 atgataatga aaaaaattac tattatacaa aacaaaaaca tttttctctc ctatttattt 3661 gacatgtttt tttcttcgtt cttctctaga actttgaccc ttgaaacgcg tgtaattact 3721 taataaaata tgaagtcttt ttttcaatta ttattgggtg gatttcagaa catttagtag 3781 acatgtaaga cagagctttt atttttaaca acgatctttt gaaaatattt gattttatct 3841 attaactttt ctcggctgcc cgagatcatt gaacattatt atcatgcatt tcatgtctcg 3901 ctcaggacgg gataaaagat ttttgttgct tgcaaattgt taaatatttt attttttcta 3961 ttatgataca tttgatagca agattacaat ttttgattgt ctttagttaa attatatttt 4021 gtatttattg aaatttgaaa tcgagagtgg cagaagatta tgtcctacac tctcccgatg 4081 ctctaaaaaa ttaacgcggt cttttgctgt catcactgct aaaaacatac gtatacttac 4141 atatacctac atagctacat acatacatac atttatatat gctaaactat tgatattttt 4201 tatttagaag ttgtaagaag attttgtttc tttccagaaa gcttgaattg attgaattaa 4261 ttaataatta cacaatacat gctatatatt gtttaattgt ttacatgcta agat