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LOCUS XM_013250115 4545 bp mRNA linear INV 02-SEP-2023 hydrolase 16 (LOC106085729), transcript variant X2, mRNA. ACCESSION XM_013250115 VERSION XM_013250115.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250115.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4545 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4545 /gene="LOC106085729" /note="ubiquitin carboxyl-terminal hydrolase 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins" /db_xref="GeneID:106085729" CDS 383..3622 /gene="LOC106085729" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase 16" /protein_id="XP_013105569.1" /db_xref="GeneID:106085729" /translation="MGKNHQPENWDGGSSDSSEGKTSPTAATRSCPHLKRAVDSGKLR KLLKGTGLLLDCGECQKMGVTSPAAEALENSVESPIGSFEYDNTLWLCLKCGSQLCGR AKNQHALQHYKTPRSDLHAVAMNTRSFEIWCYQCDSDIKPDSRKNLLECVEFVKGLAQ KPPVAVPAENIENMLRGTLESLRPLVPTDDANPFYAGPVAAAASVNNNTNTITGNNKA IPLPPPPLPPIPGMAKRTSNFNNFSAIITTGNSSATATTPAMKLTSNNIFGDSLPRVR GLTNLGNTCFFNAVMQCLAQTPYLLDVLKESAEPGEEFTLPGGTFESKEDEVLNLPPI KGSLCAWGGLTSALAQTLDELQSGGGVFNPSKLFDKLCAKCPQFQGGDQHDSHELLRH LLESVRAEDLKRYQRVILNNLGYKDQDVKSVSEDMKKKCKIYGNQAADRILRPEQVFR GFLVSTLTCQDCYNVSSRHEYFLDMSLPVSVEKSQPPQMRRKTSPDNSNSFYLHPAPA TSPTGPTKAQLKKEQKKERKAKRHAKHQHTKQMQKQFSAEAGISTVGGDNVSEAGVVD AAKAVLIGCATREEAAGEKDKTTWSASSSSAEQSDADVEDNLLDDNEKSSTKPLNTSI IGKTAAPNYDRSGNNQSFTSPVEKRDDSPENMDKDSLDEDENDSGIATSPANAGGSFP ASSASNSETNGDAMAPGDSKATNSVFSLGLNEKGANLVKQLTLNETNFPTKTALTNGD VKPNENADQSDIQSIVSQLDSLTINNDEQQQNKAARAKAKRSRTQSYSDWSTTIAPRY QCEDGECSVQSCLNSFTAVELMTGNNKVGCEACTKRINGDDPKAKTVNTNATKQFLIS SPPAVLILHLKRFQLGPRCMFRKLTRPVSFPMILDIAPFCGSKVKNLPNIDRKQKKLL YALYGVVEHSGSMYGGHYTAYVKVRPKLSQEDKRWKFIPQGSKAELDQDDEQRKKLDE LLAREKARDLRMKAANDSDDFSNSCSSSSDSSNTSSSSEPEESSIPPSPMSPCPNETA GAVGGIDETINVQVPMGKWYYVSDSRVSDASESEVLNAQAYLLFYERIY" misc_feature 647..814 /gene="LOC106085729" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" misc_feature <1175..3193 /gene="LOC106085729" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 1211..>1840 /gene="LOC106085729" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <2768..3610 /gene="LOC106085729" /note="A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19K; cd02667" /db_xref="CDD:239132" ORIGIN 1 cacttttgtg tgtgacactc ggcagttttt gacgacgagg acaaaaaaac gagatcactg 61 gaaaacggtc aagggaaatt gcggaaagta caaaaaaaac tacaataaag aaacgtagtg 121 agacgaaaaa caaccacaaa aaatacttat gtataaatgt tatgcattgt gcgagaatcg 181 tctttgaaca ggacaatgtc gtgtttggta aaaataaagt ccaatgactg aagtgcgttt 241 tcttccggtg tgtgtgcttc agctgcatcg cgtactcttc ttctgtttaa ttaaacaaag 301 aacaaaatag agaaggtgtg aaaaatcttc acaatttgaa ggtactttaa gccgacaaac 361 agagacgcca taattgaaag tcatgggcaa gaatcatcaa cccgaaaact gggatggtgg 421 ttcctcagat tcatcggagg gtaagactag tcccacggcg gcaacacgtt cttgtcccca 481 tttaaaaagg gcggttgatt cgggcaaatt acgcaaacta ttaaagggca ctggactcct 541 gttggattgt ggcgaatgtc agaaaatggg cgttacttca ccagcggctg aagcactgga 601 aaattctgtt gaatcaccaa ttggtagctt tgaatacgac aataccctgt ggttgtgctt 661 gaaatgtggt tcacaactat gcggtcgcgc caagaatcaa catgctcttc aacactataa 721 gactccacgc tcagatctac atgcagtggc aatgaataca aggtcctttg aaatttggtg 781 ctatcaatgc gacagcgata ttaaaccgga ctcacggaaa aatctcttag agtgtgtgga 841 atttgtcaaa ggtttagccc aaaaaccacc tgtagctgtt ccagcggaga acattgaaaa 901 catgttacga ggcacgttgg aatccttacg tccattggtg ccaactgacg atgccaaccc 961 attttatgct ggcccagttg cagctgcagc ctcagttaat aacaacacta acaccattac 1021 aggaaataat aaagctatac cattgccacc accacctttg cctccaatac cgggaatggc 1081 taaacgtaca agcaacttta ataatttttc ggcaattatt acgacaggaa atagcagcgc 1141 cacagccact actccagcta tgaaattaac atctaacaat atttttggag attctttgcc 1201 acgggttcga gggcttacca atttgggcaa tacatgcttt ttcaatgccg ttatgcagtg 1261 tttggctcaa acgccctatt tgttggacgt cttaaaggaa tcggccgagc ctggagaaga 1321 gttcactttg cccggtggta cttttgagtc caaagaggat gaagttctca atttgccacc 1381 tattaagggt tcgttgtgtg catggggtgg tttaacttca gctttggccc agactttgga 1441 tgagttgcaa tctggaggtg gagtttttaa tccaagcaaa ctttttgata aactttgcgc 1501 caaatgtcca caatttcagg gtggtgatca gcatgattct cacgaacttc tgagacattt 1561 actagagagc gtgagagcag aggatttaaa acgttaccaa cgggtcattc ttaataatct 1621 tggctacaaa gatcaggatg ttaaatccgt ttctgaagat atgaaaaaga aatgtaaaat 1681 ttatggcaat caagcagccg atcggattct gaggcctgaa caagtttttc gcggatttct 1741 ggtatccacc ctcacctgtc aagactgcta caatgtcagt tcgaggcatg aatatttcct 1801 cgatatgtca cttcccgtca gcgtagaaaa gtcgcaacct cctcaaatgc gacgcaaaac 1861 ttcaccagac aattccaatt cattttattt gcatcctgcg cctgctacat cacctacggg 1921 accgacaaag gcccaactga aaaaggaaca gaaaaaagaa cgcaaagcca agcgtcatgc 1981 caaacaccag cacacaaaac aaatgcaaaa acaattctct gctgaggccg gaatctcgac 2041 agtcggtggg gataatgtta gtgaagcggg tgtcgtggat gcggctaagg ccgtacttat 2101 tggttgtgct acaagggaag aggctgctgg ggaaaaggat aagacaacct ggtcagcttc 2161 atcatcctca gccgagcaat cagatgccga tgtagaagat aatttgttgg atgacaatga 2221 gaaaagctct acaaaaccac ttaatacctc aattattgga aaaacagcgg cgccaaatta 2281 cgatcgcagt ggcaacaatc aatcttttac gagtcctgtt gagaaacggg atgattcacc 2341 ggaaaacatg gacaaagact cactggatga agatgaaaat gattccggca ttgctacaag 2401 tcctgccaat gcaggtggaa gcttccctgc ttcatctgcc tcgaattcag aaacaaatgg 2461 tgatgcaatg gcaccaggtg attccaaagc cactaatagc gttttctctt tggggctcaa 2521 cgagaaagga gcaaatcttg taaaacaact aaccctcaat gaaaccaatt tccctacgaa 2581 gacagctctt acaaatggtg atgtgaagcc caatgagaat gctgaccagt ctgatataca 2641 atccatagtc agtcagttag atagtttgac aattaacaat gatgaacaac aacaaaataa 2701 ggctgcacgt gccaaggcga aacgttcgcg tacacaaagt tattcggact ggagtacaac 2761 cattgctccg cgatatcaat gcgaagatgg agaatgttca gtgcagtcgt gtctgaacag 2821 ttttactgct gtcgaattga tgacgggcaa caacaaggtg ggctgtgagg cctgtacgaa 2881 acgtataaac ggtgacgatc ccaaagccaa aacggtcaac accaatgcca ctaaacagtt 2941 ccttatctct agtccaccag ctgtactcat attgcatttg aagcgttttc aattgggccc 3001 tcgttgcatg ttccgcaaac tgacacgacc tgtcagtttt cccatgatac tcgatatagc 3061 tccgttctgt ggttctaagg ttaagaatct tcccaacatc gatcgtaaac agaaaaagct 3121 tttgtacgct ctctacggag tagttgaaca ttcaggaagc atgtacggtg gccattacac 3181 ggcctacgtc aaggtgcgac cgaaactatc gcaagaggat aaacgttgga aattcatacc 3241 acaaggcagc aaagctgagc tcgatcaaga cgatgaacaa cgcaaaaagt tggacgaact 3301 tttggcacga gaaaaggcgc gtgatctgcg catgaaagca gccaatgata gtgatgactt 3361 ttccaattca tgcagtagca gctcggattc ttccaacacg tcatcctctt ctgaacctga 3421 agaatcatcc ataccgccat caccgatgtc gccatgtccc aatgagaccg ctggtgctgt 3481 tggtggaatt gatgagacaa taaacgttca ggtgccaatg ggcaaatggt actatgtttc 3541 cgattcccga gtatcagatg ccagcgaaag tgaagtttta aatgctcagg cctatttgct 3601 gttttacgaa cgcatttact aagaaaagtt gtgttaaaaa tatatcttcg aaaatattgc 3661 agaatgggtc gtattccgca tgctggacgc taaacagtta gatagttctc ccttaaccgt 3721 ttcaacgaat gcctaggaat gggaaactta ttaaaaaaaa acacacacat agaacaaagg 3781 gtggtttttt ttatattgaa catgctaata aaaccaacca taataacgat gatgataatg 3841 aaaaaaatta ctattataca aaacaaaaac atttttctct cctatttatt tgacatgttt 3901 ttttcttcgt tcttctctag aactttgacc cttgaaacgc gtgtaattac ttaataaaat 3961 atgaagtctt tttttcaatt attattgggt ggatttcaga acatttagta gacatgtaag 4021 acagagcttt tatttttaac aacgatcttt tgaaaatatt tgattttatc tattaacttt 4081 tctcggctgc ccgagatcat tgaacattat tatcatgcat ttcatgtctc gctcaggacg 4141 ggataaaaga tttttgttgc ttgcaaattg ttaaatattt tattttttct attatgatac 4201 atttgatagc aagattacaa tttttgattg tctttagtta aattatattt tgtatttatt 4261 gaaatttgaa atcgagagtg gcagaagatt atgtcctaca ctctcccgat gctctaaaaa 4321 attaacgcgg tcttttgctg tcatcactgc taaaaacata cgtatactta catataccta 4381 catagctaca tacatacata catttatata tgctaaacta ttgatatttt ttatttagaa 4441 gttgtaagaa gattttgttt ctttccagaa agcttgaatt gattgaatta attaataatt 4501 acacaataca tgctatatat tgtttaattg tttacatgct aagat