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LOCUS XM_013250114 4340 bp mRNA linear INV 02-SEP-2023 hydrolase 16 (LOC106085729), transcript variant X1, mRNA. ACCESSION XM_013250114 VERSION XM_013250114.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013250114.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4340 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4340 /gene="LOC106085729" /note="ubiquitin carboxyl-terminal hydrolase 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins" /db_xref="GeneID:106085729" CDS 178..3417 /gene="LOC106085729" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase 16" /protein_id="XP_013105568.1" /db_xref="GeneID:106085729" /translation="MGKNHQPENWDGGSSDSSEGKTSPTAATRSCPHLKRAVDSGKLR KLLKGTGLLLDCGECQKMGVTSPAAEALENSVESPIGSFEYDNTLWLCLKCGSQLCGR AKNQHALQHYKTPRSDLHAVAMNTRSFEIWCYQCDSDIKPDSRKNLLECVEFVKGLAQ KPPVAVPAENIENMLRGTLESLRPLVPTDDANPFYAGPVAAAASVNNNTNTITGNNKA IPLPPPPLPPIPGMAKRTSNFNNFSAIITTGNSSATATTPAMKLTSNNIFGDSLPRVR GLTNLGNTCFFNAVMQCLAQTPYLLDVLKESAEPGEEFTLPGGTFESKEDEVLNLPPI KGSLCAWGGLTSALAQTLDELQSGGGVFNPSKLFDKLCAKCPQFQGGDQHDSHELLRH LLESVRAEDLKRYQRVILNNLGYKDQDVKSVSEDMKKKCKIYGNQAADRILRPEQVFR GFLVSTLTCQDCYNVSSRHEYFLDMSLPVSVEKSQPPQMRRKTSPDNSNSFYLHPAPA TSPTGPTKAQLKKEQKKERKAKRHAKHQHTKQMQKQFSAEAGISTVGGDNVSEAGVVD AAKAVLIGCATREEAAGEKDKTTWSASSSSAEQSDADVEDNLLDDNEKSSTKPLNTSI IGKTAAPNYDRSGNNQSFTSPVEKRDDSPENMDKDSLDEDENDSGIATSPANAGGSFP ASSASNSETNGDAMAPGDSKATNSVFSLGLNEKGANLVKQLTLNETNFPTKTALTNGD VKPNENADQSDIQSIVSQLDSLTINNDEQQQNKAARAKAKRSRTQSYSDWSTTIAPRY QCEDGECSVQSCLNSFTAVELMTGNNKVGCEACTKRINGDDPKAKTVNTNATKQFLIS SPPAVLILHLKRFQLGPRCMFRKLTRPVSFPMILDIAPFCGSKVKNLPNIDRKQKKLL YALYGVVEHSGSMYGGHYTAYVKVRPKLSQEDKRWKFIPQGSKAELDQDDEQRKKLDE LLAREKARDLRMKAANDSDDFSNSCSSSSDSSNTSSSSEPEESSIPPSPMSPCPNETA GAVGGIDETINVQVPMGKWYYVSDSRVSDASESEVLNAQAYLLFYERIY" misc_feature 442..609 /gene="LOC106085729" /note="Zn-finger in ubiquitin-hydrolases and other protein; Region: zf-UBP; pfam02148" /db_xref="CDD:460464" misc_feature <970..2988 /gene="LOC106085729" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 1006..>1635 /gene="LOC106085729" /note="Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly...; Region: Peptidase_C19; cl02553" /db_xref="CDD:470612" misc_feature <2563..3405 /gene="LOC106085729" /note="A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19K; cd02667" /db_xref="CDD:239132" ORIGIN 1 aagaagaaga agacttttag atccctattt tgtgactgaa taaaacggaa aagcagaaaa 61 ttttaatttc taaaacgcgt agagtggaaa aaatttggcg tttcattgaa gcacataaag 121 aaatcacaat ttgaaggtac tttaagccga caaacagaga cgccataatt gaaagtcatg 181 ggcaagaatc atcaacccga aaactgggat ggtggttcct cagattcatc ggagggtaag 241 actagtccca cggcggcaac acgttcttgt ccccatttaa aaagggcggt tgattcgggc 301 aaattacgca aactattaaa gggcactgga ctcctgttgg attgtggcga atgtcagaaa 361 atgggcgtta cttcaccagc ggctgaagca ctggaaaatt ctgttgaatc accaattggt 421 agctttgaat acgacaatac cctgtggttg tgcttgaaat gtggttcaca actatgcggt 481 cgcgccaaga atcaacatgc tcttcaacac tataagactc cacgctcaga tctacatgca 541 gtggcaatga atacaaggtc ctttgaaatt tggtgctatc aatgcgacag cgatattaaa 601 ccggactcac ggaaaaatct cttagagtgt gtggaatttg tcaaaggttt agcccaaaaa 661 ccacctgtag ctgttccagc ggagaacatt gaaaacatgt tacgaggcac gttggaatcc 721 ttacgtccat tggtgccaac tgacgatgcc aacccatttt atgctggccc agttgcagct 781 gcagcctcag ttaataacaa cactaacacc attacaggaa ataataaagc tataccattg 841 ccaccaccac ctttgcctcc aataccggga atggctaaac gtacaagcaa ctttaataat 901 ttttcggcaa ttattacgac aggaaatagc agcgccacag ccactactcc agctatgaaa 961 ttaacatcta acaatatttt tggagattct ttgccacggg ttcgagggct taccaatttg 1021 ggcaatacat gctttttcaa tgccgttatg cagtgtttgg ctcaaacgcc ctatttgttg 1081 gacgtcttaa aggaatcggc cgagcctgga gaagagttca ctttgcccgg tggtactttt 1141 gagtccaaag aggatgaagt tctcaatttg ccacctatta agggttcgtt gtgtgcatgg 1201 ggtggtttaa cttcagcttt ggcccagact ttggatgagt tgcaatctgg aggtggagtt 1261 tttaatccaa gcaaactttt tgataaactt tgcgccaaat gtccacaatt tcagggtggt 1321 gatcagcatg attctcacga acttctgaga catttactag agagcgtgag agcagaggat 1381 ttaaaacgtt accaacgggt cattcttaat aatcttggct acaaagatca ggatgttaaa 1441 tccgtttctg aagatatgaa aaagaaatgt aaaatttatg gcaatcaagc agccgatcgg 1501 attctgaggc ctgaacaagt ttttcgcgga tttctggtat ccaccctcac ctgtcaagac 1561 tgctacaatg tcagttcgag gcatgaatat ttcctcgata tgtcacttcc cgtcagcgta 1621 gaaaagtcgc aacctcctca aatgcgacgc aaaacttcac cagacaattc caattcattt 1681 tatttgcatc ctgcgcctgc tacatcacct acgggaccga caaaggccca actgaaaaag 1741 gaacagaaaa aagaacgcaa agccaagcgt catgccaaac accagcacac aaaacaaatg 1801 caaaaacaat tctctgctga ggccggaatc tcgacagtcg gtggggataa tgttagtgaa 1861 gcgggtgtcg tggatgcggc taaggccgta cttattggtt gtgctacaag ggaagaggct 1921 gctggggaaa aggataagac aacctggtca gcttcatcat cctcagccga gcaatcagat 1981 gccgatgtag aagataattt gttggatgac aatgagaaaa gctctacaaa accacttaat 2041 acctcaatta ttggaaaaac agcggcgcca aattacgatc gcagtggcaa caatcaatct 2101 tttacgagtc ctgttgagaa acgggatgat tcaccggaaa acatggacaa agactcactg 2161 gatgaagatg aaaatgattc cggcattgct acaagtcctg ccaatgcagg tggaagcttc 2221 cctgcttcat ctgcctcgaa ttcagaaaca aatggtgatg caatggcacc aggtgattcc 2281 aaagccacta atagcgtttt ctctttgggg ctcaacgaga aaggagcaaa tcttgtaaaa 2341 caactaaccc tcaatgaaac caatttccct acgaagacag ctcttacaaa tggtgatgtg 2401 aagcccaatg agaatgctga ccagtctgat atacaatcca tagtcagtca gttagatagt 2461 ttgacaatta acaatgatga acaacaacaa aataaggctg cacgtgccaa ggcgaaacgt 2521 tcgcgtacac aaagttattc ggactggagt acaaccattg ctccgcgata tcaatgcgaa 2581 gatggagaat gttcagtgca gtcgtgtctg aacagtttta ctgctgtcga attgatgacg 2641 ggcaacaaca aggtgggctg tgaggcctgt acgaaacgta taaacggtga cgatcccaaa 2701 gccaaaacgg tcaacaccaa tgccactaaa cagttcctta tctctagtcc accagctgta 2761 ctcatattgc atttgaagcg ttttcaattg ggccctcgtt gcatgttccg caaactgaca 2821 cgacctgtca gttttcccat gatactcgat atagctccgt tctgtggttc taaggttaag 2881 aatcttccca acatcgatcg taaacagaaa aagcttttgt acgctctcta cggagtagtt 2941 gaacattcag gaagcatgta cggtggccat tacacggcct acgtcaaggt gcgaccgaaa 3001 ctatcgcaag aggataaacg ttggaaattc ataccacaag gcagcaaagc tgagctcgat 3061 caagacgatg aacaacgcaa aaagttggac gaacttttgg cacgagaaaa ggcgcgtgat 3121 ctgcgcatga aagcagccaa tgatagtgat gacttttcca attcatgcag tagcagctcg 3181 gattcttcca acacgtcatc ctcttctgaa cctgaagaat catccatacc gccatcaccg 3241 atgtcgccat gtcccaatga gaccgctggt gctgttggtg gaattgatga gacaataaac 3301 gttcaggtgc caatgggcaa atggtactat gtttccgatt cccgagtatc agatgccagc 3361 gaaagtgaag ttttaaatgc tcaggcctat ttgctgtttt acgaacgcat ttactaagaa 3421 aagttgtgtt aaaaatatat cttcgaaaat attgcagaat gggtcgtatt ccgcatgctg 3481 gacgctaaac agttagatag ttctccctta accgtttcaa cgaatgccta ggaatgggaa 3541 acttattaaa aaaaaacaca cacatagaac aaagggtggt tttttttata ttgaacatgc 3601 taataaaacc aaccataata acgatgatga taatgaaaaa aattactatt atacaaaaca 3661 aaaacatttt tctctcctat ttatttgaca tgtttttttc ttcgttcttc tctagaactt 3721 tgacccttga aacgcgtgta attacttaat aaaatatgaa gtcttttttt caattattat 3781 tgggtggatt tcagaacatt tagtagacat gtaagacaga gcttttattt ttaacaacga 3841 tcttttgaaa atatttgatt ttatctatta acttttctcg gctgcccgag atcattgaac 3901 attattatca tgcatttcat gtctcgctca ggacgggata aaagattttt gttgcttgca 3961 aattgttaaa tattttattt tttctattat gatacatttg atagcaagat tacaattttt 4021 gattgtcttt agttaaatta tattttgtat ttattgaaat ttgaaatcga gagtggcaga 4081 agattatgtc ctacactctc ccgatgctct aaaaaattaa cgcggtcttt tgctgtcatc 4141 actgctaaaa acatacgtat acttacatat acctacatag ctacatacat acatacattt 4201 atatatgcta aactattgat attttttatt tagaagttgt aagaagattt tgtttctttc 4261 cagaaagctt gaattgattg aattaattaa taattacaca atacatgcta tatattgttt 4321 aattgtttac atgctaagat