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LOCUS XM_013249997 4206 bp mRNA linear INV 02-SEP-2023 (LOC106085666), transcript variant X2, mRNA. ACCESSION XM_013249997 VERSION XM_013249997.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249997.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4206 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4206 /gene="LOC106085666" /note="hypoxia up-regulated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106085666" CDS 144..2996 /gene="LOC106085666" /codon_start=1 /product="hypoxia up-regulated protein 1" /protein_id="XP_013105451.2" /db_xref="GeneID:106085666" /translation="MLHKKTTSCWWSMAAVACLLFVTAFHIRGVQSAAVMSVDLGSEW MKVGIVSPGVPMEIALNRESKRKTPVTLSFRNGVRSFGDDAVTDGIKDPASAYSYLLD LLGKQIDNPIVELYRKRFPYYDIIPDAERNTVVFKKSDTEQFSVEELIAQILVKAKEF AQDATNQPITECVITVPGYFGQAEREALLTAAQLANLKVLQLINDYTAVALNYGVFHP SGINETTQYYIFYDMGASHTSSALVSYQLVKDKHTKETNPVVQVLGVGFDRTLGGLEV QLRLRDYLAVEFNAMKKTKTDVTKSPRALAKLFKEAGRLKNVLSANNDHYAQIENLIE DQDFKLQVTREKLEEICSDLWPRVIKPLEQALSSSGLTLDVVSQVILFGGGTRVPKVQ ETLKQYIKQELGKSLNADEAAAIGAVYKAADLATGFKVKKFVVKDAVLYPIQVTFERD PGEGAEVKQVKRVLFGLMNAYPQKKVITFNKHTDDFDFFVHYGDLNHLSAEEQAYLGG LKISRVELQKIKELLEKTKDESVEAKGIKAFFTLDDSGIFRCTGVEYVYEKQKVETEE DDEGTLAKLGSTISKLFSKDKEEEKKEENKEGSSGSANEGEEANKEESTKETEKNETM KAAEAEASKKNETIKIVTIKEPVAHTLTLQFTAPLSGEAYEKAAEKLDAINKAENLRN RLESSFNALESHIIDMQQKLEEEEYASCATEEEKSKILAECSAMSDWLYEDIENPTPE MYENKLKSLKKLTDVFMARHWEHDERPEAMKALTRMIEGAEGFLNSAKNLTKETNPEK DVFTQVEIDTLSKVISDTNEWKQTESQAQKKLKRHENVRLTIKDITAKMSTLDREVKY LVTKINLWKPKVKPTPKKDKKKDKKEGDEEQKSGDEEASSGDDEAEKPNEQSEEQKEQ QVETPEAEEKSSQETAQDTSENTTPTDDDHTPRSDL" polyA_site 4206 /gene="LOC106085666" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agaaggtgga acaaaagaaa gcattctcga aaaacacatg ctaaattaaa aattggccag 61 gtgaattgtg tgccacaaag aaataaggta tctaacaagc cacacggtct gttttgtagg 121 ttgttgttgt tgttgttggt aaaatgttgc acaaaaagac cacgtcatgt tggtggtcaa 181 tggctgccgt cgcctgtctg ctctttgtga ccgccttcca catacgtggc gttcaatcag 241 cggctgtaat gtccgttgat ttgggttcgg aatggatgaa agttggcatt gtctcaccgg 301 gagtacccat ggaaattgct ttgaatcgtg aatcaaaacg aaaaactcca gtcacattgt 361 ccttccgcaa tggtgtgcga tcatttggtg atgatgcagt aactgatggc atcaaagatc 421 cagcttcggc ctatagttat ctattggatt tattaggaaa acaaattgat aatccaattg 481 tggaattgta cagaaaacgt tttccttatt acgatatcat tcccgatgcc gagcgtaata 541 cggtggtgtt taagaaaagt gatactgaac aattctctgt cgaagagtta atagcacaaa 601 ttttggtcaa ggccaaagaa ttcgcccaag atgccaccaa tcaacccata acggagtgtg 661 ttataaccgt acccggttat tttggacaag ccgaacgtga ggcattgcta actgctgccc 721 agttggccaa tttgaaagta ttacagttga tcaatgatta tactgctgtc gccctcaact 781 atggtgtgtt ccatccttcg ggcattaatg agactacaca atactacatt ttctatgata 841 tgggtgctag tcacacatca agtgccctgg tgagctatca attggttaag gacaaacata 901 caaaggaaac caatcctgtt gtccaggtgt tgggtgttgg tttcgatcgc actttaggtg 961 gtttggaagt ccagctgaga ttgcgggatt atttggcagt cgaatttaat gccatgaaaa 1021 aaaccaaaac agatgtcacc aagtcgccac gagctttggc caagttgttc aaggaagctg 1081 gacgcttgaa gaatgtgctt tcagcaaaca atgaccatta tgcgcaaatt gaaaatttaa 1141 ttgaggacca agatttcaag ctgcaagtga cacgcgaaaa attggaagaa atttgctcgg 1201 acctgtggcc tagagttatc aaacctttgg agcaagcgct tagcagttcg ggcttgacat 1261 tagatgtggt atctcaggtt attctattcg gtggtggcac tcgtgttccc aaagtacaag 1321 aaaccctcaa gcagtatata aaacaagagt tgggcaaaag tttgaatgct gatgaggctg 1381 ccgccattgg ggctgtctat aaggcagctg atttagccac cggctttaag gtgaaaaaat 1441 tcgttgtcaa ggatgccgtt ttatatccca ttcaagtgac atttgaacgt gacccgggtg 1501 agggtgccga ggtgaaacaa gtgaagcgtg tgttatttgg tctgatgaat gcctaccccc 1561 agaaaaaggt tatcactttc aataaacaca ccgacgattt tgatttcttt gtccactatg 1621 gcgacttgaa tcatctgagc gcagaggaac aagcctattt gggtggtttg aaaatctcac 1681 gcgtggaatt gcagaaaatc aaggagcttt tggaaaagac caaagatgag tccgtggagg 1741 ctaagggcat taaggccttc ttcactctgg atgattctgg tatattccgt tgcaccggtg 1801 ttgaatatgt ctatgaaaaa caaaaggtgg aaactgaaga agacgatgag ggaactttag 1861 ctaaattggg tagcaccatt agcaaattat tctccaagga taaggaggag gaaaagaaag 1921 aagagaataa ggaaggcagt agcggcagtg caaatgaagg cgaagaggct aacaaagagg 1981 aaagcaccaa ggagaccgaa aagaatgaaa ctatgaaggc cgccgaagca gaggctagca 2041 aaaagaatga aaccatcaaa atcgtcacca tcaaggagcc agtggcccat actttgactt 2101 tgcagtttac ggctcccttg agtggcgaag cttatgaaaa ggcagcagaa aaacttgatg 2161 ccattaataa ggcagagaat cttagaaacc gtttagaatc gtcctttaat gctttggaat 2221 cacacatcat tgatatgcaa caaaaactgg aggaagagga atatgcctct tgtgccaccg 2281 aagaggaaaa atccaaaatt ctggccgaat gttcggccat gtccgattgg ctatatgagg 2341 acattgaaaa tcccactccc gaaatgtatg agaataaatt gaaatctcta aagaaactca 2401 cagatgtttt tatggcccgt cactgggaac atgatgaacg tcccgaggcc atgaaagctc 2461 taacgcgtat gattgagggt gccgaaggtt tcctaaatag tgccaaaaat ctcaccaagg 2521 aaaccaatcc agaaaaagat gttttcactc aggtggaaat cgatacactc tccaaagtga 2581 tttcggatac aaatgaatgg aagcaaaccg aaagccaggc ccagaaaaaa ctaaaacgcc 2641 atgaaaatgt acgccttacc attaaagata tcaccgccaa aatgtccacc ttggatcgcg 2701 aagtcaagta tttggtaacc aaaatcaatt tgtggaaacc caaagtaaag cccaccccca 2761 agaaagacaa gaagaaggac aagaaagagg gcgatgaaga gcaaaaatcc ggcgatgaag 2821 aagcaagcag cggtgatgat gaggccgaaa aaccaaacga acaaagtgag gagcaaaagg 2881 agcagcaagt agagacaccc gaagccgagg aaaagagtag ccaagaaact gcacaagaca 2941 cgagtgagaa tacaacaccc acagatgatg accacacacc tcgatcggat ctttaagtag 3001 ctaactaaaa gcatttgaga tacatgagaa aaaaatattt aattatttaa aagactgtgg 3061 tatttaaaac gtatgttaaa acgacaaaaa caaaaatcat ttatttaggg acattcgaat 3121 ggattttttt acagcataga gagcatggaa gctcctatag tgctcaaaag tccataagaa 3181 ttgatttctg ggagaaccat tcgaatttct gtaaataagt taagagacca attattccag 3241 ctcgtacatt tagaaagcaa gccaaggcca ataaacaatt taagagacat acaaagttgc 3301 aaagacgacc gcgttcacaa tacttaataa ccccttaaaa tggatttatt tgataattct 3361 ataaaggaaa tctgtcagat aaacctattt caaatttata ttgagtattg tgaacaccgg 3421 tgtaagcctt tgacagcaaa ttgtctggaa aacttaaatg ggtgtagtag tatcaaaaac 3481 aaaaaacttt ttataatatt caaatatcat aaatttcttg tatgttcctt agtcatttct 3541 cttctataaa ttacataaat aatgtacttt gtatatgtta tgcagctggt tatcacaatt 3601 tggtgtctta tgttttaagt tctatttaat aattaaaagt gaaatacgta cataattcat 3661 tatttctact acactcttac actacgagtg ttgtattttt tttttaaata aatataacaa 3721 ctggccgaag aagaagatga gaaaacaaaa aaacaacaaa cacataaacc attccgtcat 3781 aagtctactt ctcccaaact ttgccaatag taacctatca aggaaaaagt gctatccttt 3841 atcaaacaaa acccctccct cacatagctt ctattgtatt ttaaagtttc aaatccttaa 3901 ttgttctctc ttacaagttt gaagtttttt gattaccaga accgccctat cccaaacacg 3961 cattcaacaa acacatctac acacgtattt cataaaatgt tttcatcgat ttacaaagaa 4021 gtatgatata cataatttaa aattatttag cttgatttct tttctattta ttttaagctt 4081 attaattagt taaaaaaaaa gaaacaaaac aaagaaaatt aaaagaaaaa aatacacaaa 4141 attaaaaaag gaaaagcaac aacaacaaca cgtaataaac atcaaaaatt gtagaaaaac 4201 cataaa