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LOCUS XM_013249996 4224 bp mRNA linear INV 02-SEP-2023 (LOC106085666), transcript variant X1, mRNA. ACCESSION XM_013249996 VERSION XM_013249996.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249996.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4224 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4224 /gene="LOC106085666" /note="hypoxia up-regulated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins" /db_xref="GeneID:106085666" CDS 162..3014 /gene="LOC106085666" /codon_start=1 /product="hypoxia up-regulated protein 1" /protein_id="XP_013105450.2" /db_xref="GeneID:106085666" /translation="MLHKKTTSCWWSMAAVACLLFVTAFHIRGVQSAAVMSVDLGSEW MKVGIVSPGVPMEIALNRESKRKTPVTLSFRNGVRSFGDDAVTDGIKDPASAYSYLLD LLGKQIDNPIVELYRKRFPYYDIIPDAERNTVVFKKSDTEQFSVEELIAQILVKAKEF AQDATNQPITECVITVPGYFGQAEREALLTAAQLANLKVLQLINDYTAVALNYGVFHP SGINETTQYYIFYDMGASHTSSALVSYQLVKDKHTKETNPVVQVLGVGFDRTLGGLEV QLRLRDYLAVEFNAMKKTKTDVTKSPRALAKLFKEAGRLKNVLSANNDHYAQIENLIE DQDFKLQVTREKLEEICSDLWPRVIKPLEQALSSSGLTLDVVSQVILFGGGTRVPKVQ ETLKQYIKQELGKSLNADEAAAIGAVYKAADLATGFKVKKFVVKDAVLYPIQVTFERD PGEGAEVKQVKRVLFGLMNAYPQKKVITFNKHTDDFDFFVHYGDLNHLSAEEQAYLGG LKISRVELQKIKELLEKTKDESVEAKGIKAFFTLDDSGIFRCTGVEYVYEKQKVETEE DDEGTLAKLGSTISKLFSKDKEEEKKEENKEGSSGSANEGEEANKEESTKETEKNETM KAAEAEASKKNETIKIVTIKEPVAHTLTLQFTAPLSGEAYEKAAEKLDAINKAENLRN RLESSFNALESHIIDMQQKLEEEEYASCATEEEKSKILAECSAMSDWLYEDIENPTPE MYENKLKSLKKLTDVFMARHWEHDERPEAMKALTRMIEGAEGFLNSAKNLTKETNPEK DVFTQVEIDTLSKVISDTNEWKQTESQAQKKLKRHENVRLTIKDITAKMSTLDREVKY LVTKINLWKPKVKPTPKKDKKKDKKEGDEEQKSGDEEASSGDDEAEKPNEQSEEQKEQ QVETPEAEEKSSQETAQDTSENTTPTDDDHTPRSDL" polyA_site 4224 /gene="LOC106085666" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaagtagccg acgaagaaca cgtcagttga attgttggca ctacactggg gagcattatt 61 tttgtacgta actgagttct agaaacattt aaaacaattc gaaaggtatc taacaagcca 121 cacggtctgt tttgtaggtt gttgttgttg ttgttggtaa aatgttgcac aaaaagacca 181 cgtcatgttg gtggtcaatg gctgccgtcg cctgtctgct ctttgtgacc gccttccaca 241 tacgtggcgt tcaatcagcg gctgtaatgt ccgttgattt gggttcggaa tggatgaaag 301 ttggcattgt ctcaccggga gtacccatgg aaattgcttt gaatcgtgaa tcaaaacgaa 361 aaactccagt cacattgtcc ttccgcaatg gtgtgcgatc atttggtgat gatgcagtaa 421 ctgatggcat caaagatcca gcttcggcct atagttatct attggattta ttaggaaaac 481 aaattgataa tccaattgtg gaattgtaca gaaaacgttt tccttattac gatatcattc 541 ccgatgccga gcgtaatacg gtggtgttta agaaaagtga tactgaacaa ttctctgtcg 601 aagagttaat agcacaaatt ttggtcaagg ccaaagaatt cgcccaagat gccaccaatc 661 aacccataac ggagtgtgtt ataaccgtac ccggttattt tggacaagcc gaacgtgagg 721 cattgctaac tgctgcccag ttggccaatt tgaaagtatt acagttgatc aatgattata 781 ctgctgtcgc cctcaactat ggtgtgttcc atccttcggg cattaatgag actacacaat 841 actacatttt ctatgatatg ggtgctagtc acacatcaag tgccctggtg agctatcaat 901 tggttaagga caaacataca aaggaaacca atcctgttgt ccaggtgttg ggtgttggtt 961 tcgatcgcac tttaggtggt ttggaagtcc agctgagatt gcgggattat ttggcagtcg 1021 aatttaatgc catgaaaaaa accaaaacag atgtcaccaa gtcgccacga gctttggcca 1081 agttgttcaa ggaagctgga cgcttgaaga atgtgctttc agcaaacaat gaccattatg 1141 cgcaaattga aaatttaatt gaggaccaag atttcaagct gcaagtgaca cgcgaaaaat 1201 tggaagaaat ttgctcggac ctgtggccta gagttatcaa acctttggag caagcgctta 1261 gcagttcggg cttgacatta gatgtggtat ctcaggttat tctattcggt ggtggcactc 1321 gtgttcccaa agtacaagaa accctcaagc agtatataaa acaagagttg ggcaaaagtt 1381 tgaatgctga tgaggctgcc gccattgggg ctgtctataa ggcagctgat ttagccaccg 1441 gctttaaggt gaaaaaattc gttgtcaagg atgccgtttt atatcccatt caagtgacat 1501 ttgaacgtga cccgggtgag ggtgccgagg tgaaacaagt gaagcgtgtg ttatttggtc 1561 tgatgaatgc ctacccccag aaaaaggtta tcactttcaa taaacacacc gacgattttg 1621 atttctttgt ccactatggc gacttgaatc atctgagcgc agaggaacaa gcctatttgg 1681 gtggtttgaa aatctcacgc gtggaattgc agaaaatcaa ggagcttttg gaaaagacca 1741 aagatgagtc cgtggaggct aagggcatta aggccttctt cactctggat gattctggta 1801 tattccgttg caccggtgtt gaatatgtct atgaaaaaca aaaggtggaa actgaagaag 1861 acgatgaggg aactttagct aaattgggta gcaccattag caaattattc tccaaggata 1921 aggaggagga aaagaaagaa gagaataagg aaggcagtag cggcagtgca aatgaaggcg 1981 aagaggctaa caaagaggaa agcaccaagg agaccgaaaa gaatgaaact atgaaggccg 2041 ccgaagcaga ggctagcaaa aagaatgaaa ccatcaaaat cgtcaccatc aaggagccag 2101 tggcccatac tttgactttg cagtttacgg ctcccttgag tggcgaagct tatgaaaagg 2161 cagcagaaaa acttgatgcc attaataagg cagagaatct tagaaaccgt ttagaatcgt 2221 cctttaatgc tttggaatca cacatcattg atatgcaaca aaaactggag gaagaggaat 2281 atgcctcttg tgccaccgaa gaggaaaaat ccaaaattct ggccgaatgt tcggccatgt 2341 ccgattggct atatgaggac attgaaaatc ccactcccga aatgtatgag aataaattga 2401 aatctctaaa gaaactcaca gatgttttta tggcccgtca ctgggaacat gatgaacgtc 2461 ccgaggccat gaaagctcta acgcgtatga ttgagggtgc cgaaggtttc ctaaatagtg 2521 ccaaaaatct caccaaggaa accaatccag aaaaagatgt tttcactcag gtggaaatcg 2581 atacactctc caaagtgatt tcggatacaa atgaatggaa gcaaaccgaa agccaggccc 2641 agaaaaaact aaaacgccat gaaaatgtac gccttaccat taaagatatc accgccaaaa 2701 tgtccacctt ggatcgcgaa gtcaagtatt tggtaaccaa aatcaatttg tggaaaccca 2761 aagtaaagcc cacccccaag aaagacaaga agaaggacaa gaaagagggc gatgaagagc 2821 aaaaatccgg cgatgaagaa gcaagcagcg gtgatgatga ggccgaaaaa ccaaacgaac 2881 aaagtgagga gcaaaaggag cagcaagtag agacacccga agccgaggaa aagagtagcc 2941 aagaaactgc acaagacacg agtgagaata caacacccac agatgatgac cacacacctc 3001 gatcggatct ttaagtagct aactaaaagc atttgagata catgagaaaa aaatatttaa 3061 ttatttaaaa gactgtggta tttaaaacgt atgttaaaac gacaaaaaca aaaatcattt 3121 atttagggac attcgaatgg atttttttac agcatagaga gcatggaagc tcctatagtg 3181 ctcaaaagtc cataagaatt gatttctggg agaaccattc gaatttctgt aaataagtta 3241 agagaccaat tattccagct cgtacattta gaaagcaagc caaggccaat aaacaattta 3301 agagacatac aaagttgcaa agacgaccgc gttcacaata cttaataacc ccttaaaatg 3361 gatttatttg ataattctat aaaggaaatc tgtcagataa acctatttca aatttatatt 3421 gagtattgtg aacaccggtg taagcctttg acagcaaatt gtctggaaaa cttaaatggg 3481 tgtagtagta tcaaaaacaa aaaacttttt ataatattca aatatcataa atttcttgta 3541 tgttccttag tcatttctct tctataaatt acataaataa tgtactttgt atatgttatg 3601 cagctggtta tcacaatttg gtgtcttatg ttttaagttc tatttaataa ttaaaagtga 3661 aatacgtaca taattcatta tttctactac actcttacac tacgagtgtt gtattttttt 3721 tttaaataaa tataacaact ggccgaagaa gaagatgaga aaacaaaaaa acaacaaaca 3781 cataaaccat tccgtcataa gtctacttct cccaaacttt gccaatagta acctatcaag 3841 gaaaaagtgc tatcctttat caaacaaaac ccctccctca catagcttct attgtatttt 3901 aaagtttcaa atccttaatt gttctctctt acaagtttga agttttttga ttaccagaac 3961 cgccctatcc caaacacgca ttcaacaaac acatctacac acgtatttca taaaatgttt 4021 tcatcgattt acaaagaagt atgatataca taatttaaaa ttatttagct tgatttcttt 4081 tctatttatt ttaagcttat taattagtta aaaaaaaaga aacaaaacaa agaaaattaa 4141 aagaaaaaaa tacacaaaat taaaaaagga aaagcaacaa caacaacacg taataaacat 4201 caaaaattgt agaaaaacca taaa