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LOCUS XM_013249857 6427 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013249857 VERSION XM_013249857.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249857.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6427 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6427 /gene="LOC106085543" /note="protein elav; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins" /db_xref="GeneID:106085543" CDS 346..1650 /gene="LOC106085543" /codon_start=1 /product="protein elav isoform X2" /protein_id="XP_013105311.1" /db_xref="GeneID:106085543" /translation="MDFMMANPGAAAVDNQSAILPGTNPAVAAAAALSAAAVSPAAAA QLQQQQQQVQQAILQVQQQQTQQAVAAAAAAVAQQLQNQTNGNTTNGTGTNGSSETRT NLIVNYLPQTMSEDEIRSLFSSVGEIESVKLIRDKGQPFLDPLNPQATKGQSLGYGFV NYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSEAIKGANLYVSGLPKTMTQQDLEA IFAPFGQIITSRILQNAGNDSQTKGVGFIRFDKREEATRAIIALNGTTPANCTDPIVV KFSNTPGSTSKIIQPQLPTFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPN GLGAAAAAATSLASGPGGAYPIFIYNLAPETEESSLWQLFGPFGAVQSVKIVKDSSTN QCKGYGFVSMTNYDEAAMAIRALNGYTLGNRVLQVSFKTNKK" misc_feature 640..1644 /gene="LOC106085543" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 6427 /gene="LOC106085543" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tactaaatgt acatgtagga gagaacaata atagtcaaca cctcattcat cgactacgac 61 tgcgacgacg accctacatc atagtataca caccaaacaa cgccaaataa ttttttgttg 121 ccgttttgga tctctaacac aaaaaattag acatcctcaa cctccctacc tagcatacaa 181 agactcaaat ccaacccaaa gcggaaagaa cttacttcag cgcacgattt gctggcgttc 241 attttccaac atattacaac aaatctaacg ctagcttata cccctaccta gctagcatct 301 aacatacata cacacacgta ctaactccca aacgtaacta cataaatgga ctttatgatg 361 gctaatcccg gagctgctgc agttgataat caatcagcaa tattgcctgg cacaaatcca 421 gctgtcgctg ctgcggccgc tttatcagcc gccgccgtat caccagccgc cgctgcgcaa 481 ttgcaacaac aacagcagca ggtccagcag gccattttgc aagtgcaaca acagcaaaca 541 caacaagctg tggccgctgc agcagccgct gttgctcaac aattgcaaaa tcaaactaat 601 ggcaacacaa caaatggcac cggcaccaat ggcagcagcg aaactcgcac caatctgatt 661 gtaaactatt tgccccaaac catgagtgag gatgagatcc gttcgctgtt ctccagtgtg 721 ggcgaaatag aatcggttaa actgatcaga gacaagggac aaccctttct ggatcccttg 781 aatccccagg ctacaaaggg tcaaagtttg ggctatggtt ttgtcaacta tgtacggcct 841 caagatgctg agcaggctgt gaatgtttta aatggtttgc gtttgcagaa caagacaatt 901 aaagtttcat tcgctcgtcc ctcatccgaa gccattaagg gtgccaatct gtatgtatcg 961 ggcctgccca agaccatgac tcaacaagat ttggaggcaa ttttcgcacc tttcggacag 1021 atcatcacct cacgtatttt gcagaatgcc ggcaatgata gccagaccaa aggtgtgggc 1081 ttcatacgct ttgacaaacg tgaagaggcc accagagcta taatcgcctt gaatggcacc 1141 acccccgcca attgcacaga tcccattgtg gtcaagttct caaatacacc cggaagcaca 1201 agcaaaatca tacaaccaca attgcccact ttcttgaatc cccagttggt cagacgtatt 1261 ggtggggcca tgcacactcc cgtgaataag ggtttggccc gattctcgcc catggctggt 1321 gatatgctcg atgtgatgtt acccaacggt ttgggagctg cagcggcagc tgccacctca 1381 ttggccagtg gacccggcgg tgcttatcct attttcatct acaatttggc tcctgaaacc 1441 gaagagtcat ccttgtggca gctattcggc cccttcggtg cagtgcaatc ggttaaaatc 1501 gtcaaagact cgtcaacaaa tcaatgcaaa ggttatggtt tcgtgtccat gaccaactac 1561 gatgaagcag ctatggccat acgggctctc aacggctaca ccttgggtaa tcgtgtacta 1621 caagtcagtt ttaaaaccaa caaaaagtaa atgtcacttt tgtattaaca acaacaacag 1681 caacaacaac atacacccac atataattct taaaaaataa caacaacaaa aacagtaaag 1741 atgaaaaccc cccataaaaa ttagtagata ctaagaaaag ttaggacaga aacataaaaa 1801 acacatgaat acacacaaac acacacacac acaatagttg tggaaaaaag gaaaatgtga 1861 gaatttgttg tgcaaagggc gcatgaggtg taacctagaa aacaaacaaa aaaaaatatt 1921 tctactctct ttttgctctc tctcttttaa atttaagagg ataaaagaaa caaacgaaac 1981 acacacacac atacacacat ttgcattgta caacaataag ccccgtttag ccccactcac 2041 tttctcacat acattcacgt acacacaaac acacattcaa acgcagccat actggaaata 2101 agtaatgcat gtcattttga agtgttgcat ttgtcctttt aaaggaacaa gacaagaact 2161 tcggttccac ggtttgttgc cacacgggca cagctgccag cgccaaaccc agtggtggaa 2221 aaaccaagta gttccctcac ttcttacggt ttgccggaca gcgcttgccc ccagaaaccg 2281 cccggcctaa tgttggctgg aatttgatta gaatttgttt cttgtttaaa gaaatcaaca 2341 aaagaaatgt gggttgcaat atgtaaaaac aataaatccc ccaattcccg cccccaggaa 2401 aaaaacaaca attttaacat aggataaatt aaaacaaact aaaagtgaaa gtaaatcttc 2461 caaaaaacgc ataaatttaa ttaaatgaaa aaccaatttc aacactcgcc agtgaaatgg 2521 gaaaatttaa aacatttttt taagaaaaca aaataatata tgtatagaga ttttttctat 2581 atacgtagga aaacaaaccc agaaacccat agctaagaag aggcttttac agtattaatg 2641 aaaagagaag aaattcgagt tcgatgatga gaaagcatca tatactggtg actgttagga 2701 aaaaaaccaa aaaacaaaaa ctaaaactac ttaatctccc tttcttaaga aaacaaaaaa 2761 gcataagaat cttaataata atactagtta aaaacgaaaa aactcaaagt tatttataaa 2821 attttatgta gcaaaaaatt ttgaaaaacc aaaaacccca acaaatgacg aaacctcact 2881 cattcactct cgaacacaca caaacacaca atgagttcgc caacatgtgg actttgattt 2941 caaaggctgc tggctttcaa gccgttaaga gggaatattg aatgtctgtc tatctatact 3001 atatataagg atattatttg agtttcttac ttcttttatt tctctcccat tgctgccatg 3061 ccttagtggc tttgggtggg ctagcatttc atattgaagg tgttaggctt aatttttatt 3121 ttagcattct ccatccctct gggcatttat gtaggttgtt tttgggtata aacatatata 3181 tatatatata tagacataca tatattaggc gaaaaagtca tcatttacaa aatgaaacgt 3241 aaaatgaagc acaaagtttt tttttataca actacaagtt aaaagaaata aaggcaatct 3301 ctcatggaaa aaagtcatca gtcagacaaa aaaatacaat actaattaat taatgttttc 3361 tttcaaaatc atttgttgtt catagtatat agacatacat atattaattt tcttactgtc 3421 ttgaaattgt tttcaaccag caaatctatt agttttttct ttggagattt catatacaat 3481 agatatatat gtatgctttg agtttttggt taagtatttt ctttttgttg tactattatg 3541 tacctcagtc taccttccca aaaacctgcc tgacccgacc cgacctgacc tgatcttaac 3601 ttaacccctt ttttttgaaa tatattttca atttcaattt acgatttatc gtttctttct 3661 tttctttttc ttgaaaaact gcagtagagg tgtgttgtgg tacatcaaaa atccttgaat 3721 tgcgtttttg gtttgttttc ttttgataat ctttgactct ttgttgttat tgttgttttt 3781 tagcttaatt tcttttgttg attcctttaa gttgtgtata cttctcagca aaaagaaaaa 3841 atgtttattt acaaaacacc gatatacata caaactatac ataaaaaata tttatttatt 3901 catagtcttt tttttttttg aaacatacat acgtatataa tttcttttcc tattacttcc 3961 ttcaaaggca gcattattta tttgtttgta caattaattt taattttttt tatatataga 4021 tatgccgtag gttaggttta gaaactaaga aaattccaat tgtaaatttt aaatacaaca 4081 tcattctcag acgttaggca atttagtcca tagtgatgcc aaaataacaa gagaagaaag 4141 cattgaacgc cctaaagtct ttaaagaaat gataatcacg tattcaacac attattgtgt 4201 acctgcacga gaccataagc ccgtgggctt ggaacaagtg tgcacttgtg ttggtgcgcc 4261 caccactgat caaaactctt taactctttt tgattgccag attaccaggg cactcactgg 4321 acaagtgttt tatagttttt tcgcccatac ggtgacctgt gagtaagact tctagtctag 4381 ccaacaacag catgtttcca atcggagaga gagagagaga cctgttaatg agatttctat 4441 gccatccaaa catcttaact tggaccgttt ttgcccatct acaatcccaa cggatctaca 4501 ttaataagta ataaaatgag tgcagaattt caaatggcta gctttgctcc ttcgaaagtt 4561 gtcgtgcttt cgacagacgg acggatatgg ctaaatcgac ttaaagtctg tcagtctaga 4621 atatatatac cttatgtgtc cataggccgg aggcgaccac agaggttatc atgtccgccg 4681 agcgcctggg ttcaaatacc ggcgcgaaca ttagaaaaaa ttttcagcta tggttatccc 4741 ctggctaatg ctggctacat ttgtatgagg tatccttcca tgttgaaact tcttcaccaa 4801 gtggaacaga agaccacttg tgctttaact gctaacattg acaggtactt ggaattttaa 4861 gaagtctaaa tttttgttaa attttgtttt ctaaactttg cagtttttta ttatgttata 4921 tttgctatta tatggaattt tttttagtct aaagccgcct gctcatccct cattaaaaat 4981 tttctccaat aaacacatca gttttttgtt taattaaaaa caattacctt catcctcaaa 5041 tgcattattt aaacatcatt tgaagaaaac aagagtaaca aaaaaacccg aaaatagtta 5101 taaaaaactt cttatattta tgaattgatt atatacatgt atgcaattta gtaattttat 5161 tttacacaca catatatata cctacataat ttttttcttt aaaaatttag tttttaagaa 5221 gaacaaacaa aaaaaaagaa ttattatata cacatacaca cacacataac catagcctag 5281 gcaaggttga aacaaaagaa aaatatagtt ttagtattta aaaaaaaaga atctaaaaaa 5341 gaatgaaccc cctcccagat gaatgatgaa aagaaatgaa acaaagaaaa ggaaaggaaa 5401 aatattccat gatgagaata agaagaagca agttaaaaat aaattatttt aaaagaaaac 5461 ggaacaagta acaaacaaag atctagtcag tgaaaatata tattttttaa attaagttta 5521 aatacaaaac aaaacaaaca agaagcatat atacaaagct ctgagagaga aacatcctaa 5581 tatccttaat aacgatgttt ccctgcccct ataaaaaaaa ctagctaaac ttttttttta 5641 atattttaat ttcttttcaa acatatattt ttggttttta aagttgtatc tcgtctcttt 5701 aaagaaaaaa aaaaaaaaga taatatataa ggtttttcag ttctgttttt actaatttat 5761 gaagaaacaa aaaaaaaaca cttattcctt tttgttattt tgaaaagaaa agtaaggaaa 5821 gcaacctata taatccaaag attaaaatat ttagtaaaat tctatataaa gagaagaaaa 5881 aaaataagaa agaaagaaac taccctaaag aaacacagat tgtacacaga tttttcaaga 5941 aaagaagaga aaacttttta attaaaattt ttaaaaattt aaaacaagat ttttaaggct 6001 aagtgcatgc ttaaaagcag tgtacactta gagaaggcaa agtcagctgc ccagttgaat 6061 aaatttatat acaacatatt gactttaatt gatttatttt aatagatttc cccagaaatc 6121 tatgctatgc attaagagct gttaataatg acataaaaca gttctctctg tctactgaga 6181 gctttgacat ccctgtgttt gtctgcatta ccattagctg cactgtttta tcatcggctt 6241 atgtttttgc acttggacag cttcactttt ttatcatcgt cttatgtttt tgcatttggt 6301 cagctgcact gttttatcgt cggtttttgg cagcttactt tgccttcttt aaaactgctt 6361 tgcagtttga aataatagtg agaagataac acacaatttt ttgtgcaata gctaagaaga 6421 agcagat