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LOCUS XM_013249850 6299 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013249850 VERSION XM_013249850.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249850.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6299 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6299 /gene="LOC106085543" /note="protein elav; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins" /db_xref="GeneID:106085543" CDS 218..1522 /gene="LOC106085543" /codon_start=1 /product="protein elav isoform X1" /protein_id="XP_013105304.1" /db_xref="GeneID:106085543" /translation="MDFMMANPGAAAVDNQSAILPGTNPAVAAAAALSAAAVSPAAAA QLQQQQQQVQQAILQVQQQQTQQAVAAAAAAVAQQLQNQTNGNTTNGTGTNGSSETRT NLIVNYLPQTMSEDEIRSLFSSVGEIESVKLIRDKGQPFLDPLNPQATKGQSLGYGFV NYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSEAIKGANLYVSGLPKTMTQQDLEA IFAPFGQIITSRILQNAGNDSQTKGVGFIRFDKREEATRAIIALNGTTPANCTDPIVV KFSNTPGSTSKIIQPQLPTFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPN GLGAAAAAATSLASGPGGAYPIFIYNLAPETEESSLWQLFGPFGAVQSVKIVKDSSTN QCKGYGFVSMTNYDEAAMAIRALNGYTLGNRVLQVSFKTNKK" misc_feature 512..1516 /gene="LOC106085543" /note="ELAV/HuD family splicing factor; Region: ELAV_HUD_SF; TIGR01661" /db_xref="CDD:273741" polyA_site 6299 /gene="LOC106085543" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cacttccact tcgtgcatca tttcaaaatc aactttcgag cggaattgac gtacatttta 61 cattttcccc gccgtctgac gctgacgcct tggtctcaat ttcattaagt gaaataataa 121 ataaataaag aataatagaa taaataaaaa ttttgaagaa agcccaagct ttgaaagcgt 181 tttaaatttg caaacgcaaa aaatacataa ttaaaaaatg gactttatga tggctaatcc 241 cggagctgct gcagttgata atcaatcagc aatattgcct ggcacaaatc cagctgtcgc 301 tgctgcggcc gctttatcag ccgccgccgt atcaccagcc gccgctgcgc aattgcaaca 361 acaacagcag caggtccagc aggccatttt gcaagtgcaa caacagcaaa cacaacaagc 421 tgtggccgct gcagcagccg ctgttgctca acaattgcaa aatcaaacta atggcaacac 481 aacaaatggc accggcacca atggcagcag cgaaactcgc accaatctga ttgtaaacta 541 tttgccccaa accatgagtg aggatgagat ccgttcgctg ttctccagtg tgggcgaaat 601 agaatcggtt aaactgatca gagacaaggg acaacccttt ctggatccct tgaatcccca 661 ggctacaaag ggtcaaagtt tgggctatgg ttttgtcaac tatgtacggc ctcaagatgc 721 tgagcaggct gtgaatgttt taaatggttt gcgtttgcag aacaagacaa ttaaagtttc 781 attcgctcgt ccctcatccg aagccattaa gggtgccaat ctgtatgtat cgggcctgcc 841 caagaccatg actcaacaag atttggaggc aattttcgca cctttcggac agatcatcac 901 ctcacgtatt ttgcagaatg ccggcaatga tagccagacc aaaggtgtgg gcttcatacg 961 ctttgacaaa cgtgaagagg ccaccagagc tataatcgcc ttgaatggca ccacccccgc 1021 caattgcaca gatcccattg tggtcaagtt ctcaaataca cccggaagca caagcaaaat 1081 catacaacca caattgccca ctttcttgaa tccccagttg gtcagacgta ttggtggggc 1141 catgcacact cccgtgaata agggtttggc ccgattctcg cccatggctg gtgatatgct 1201 cgatgtgatg ttacccaacg gtttgggagc tgcagcggca gctgccacct cattggccag 1261 tggacccggc ggtgcttatc ctattttcat ctacaatttg gctcctgaaa ccgaagagtc 1321 atccttgtgg cagctattcg gccccttcgg tgcagtgcaa tcggttaaaa tcgtcaaaga 1381 ctcgtcaaca aatcaatgca aaggttatgg tttcgtgtcc atgaccaact acgatgaagc 1441 agctatggcc atacgggctc tcaacggcta caccttgggt aatcgtgtac tacaagtcag 1501 ttttaaaacc aacaaaaagt aaatgtcact tttgtattaa caacaacaac agcaacaaca 1561 acatacaccc acatataatt cttaaaaaat aacaacaaca aaaacagtaa agatgaaaac 1621 cccccataaa aattagtaga tactaagaaa agttaggaca gaaacataaa aaacacatga 1681 atacacacaa acacacacac acacaatagt tgtggaaaaa aggaaaatgt gagaatttgt 1741 tgtgcaaagg gcgcatgagg tgtaacctag aaaacaaaca aaaaaaaata tttctactct 1801 ctttttgctc tctctctttt aaatttaaga ggataaaaga aacaaacgaa acacacacac 1861 acatacacac atttgcattg tacaacaata agccccgttt agccccactc actttctcac 1921 atacattcac gtacacacaa acacacattc aaacgcagcc atactggaaa taagtaatgc 1981 atgtcatttt gaagtgttgc atttgtcctt ttaaaggaac aagacaagaa cttcggttcc 2041 acggtttgtt gccacacggg cacagctgcc agcgccaaac ccagtggtgg aaaaaccaag 2101 tagttccctc acttcttacg gtttgccgga cagcgcttgc ccccagaaac cgcccggcct 2161 aatgttggct ggaatttgat tagaatttgt ttcttgttta aagaaatcaa caaaagaaat 2221 gtgggttgca atatgtaaaa acaataaatc ccccaattcc cgcccccagg aaaaaaacaa 2281 caattttaac ataggataaa ttaaaacaaa ctaaaagtga aagtaaatct tccaaaaaac 2341 gcataaattt aattaaatga aaaaccaatt tcaacactcg ccagtgaaat gggaaaattt 2401 aaaacatttt tttaagaaaa caaaataata tatgtataga gattttttct atatacgtag 2461 gaaaacaaac ccagaaaccc atagctaaga agaggctttt acagtattaa tgaaaagaga 2521 agaaattcga gttcgatgat gagaaagcat catatactgg tgactgttag gaaaaaaacc 2581 aaaaaacaaa aactaaaact acttaatctc cctttcttaa gaaaacaaaa aagcataaga 2641 atcttaataa taatactagt taaaaacgaa aaaactcaaa gttatttata aaattttatg 2701 tagcaaaaaa ttttgaaaaa ccaaaaaccc caacaaatga cgaaacctca ctcattcact 2761 ctcgaacaca cacaaacaca caatgagttc gccaacatgt ggactttgat ttcaaaggct 2821 gctggctttc aagccgttaa gagggaatat tgaatgtctg tctatctata ctatatataa 2881 ggatattatt tgagtttctt acttctttta tttctctccc attgctgcca tgccttagtg 2941 gctttgggtg ggctagcatt tcatattgaa ggtgttaggc ttaattttta ttttagcatt 3001 ctccatccct ctgggcattt atgtaggttg tttttgggta taaacatata tatatatata 3061 tatagacata catatattag gcgaaaaagt catcatttac aaaatgaaac gtaaaatgaa 3121 gcacaaagtt tttttttata caactacaag ttaaaagaaa taaaggcaat ctctcatgga 3181 aaaaagtcat cagtcagaca aaaaaataca atactaatta attaatgttt tctttcaaaa 3241 tcatttgttg ttcatagtat atagacatac atatattaat tttcttactg tcttgaaatt 3301 gttttcaacc agcaaatcta ttagtttttt ctttggagat ttcatataca atagatatat 3361 atgtatgctt tgagtttttg gttaagtatt ttctttttgt tgtactatta tgtacctcag 3421 tctaccttcc caaaaacctg cctgacccga cccgacctga cctgatctta acttaacccc 3481 ttttttttga aatatatttt caatttcaat ttacgattta tcgtttcttt cttttctttt 3541 tcttgaaaaa ctgcagtaga ggtgtgttgt ggtacatcaa aaatccttga attgcgtttt 3601 tggtttgttt tcttttgata atctttgact ctttgttgtt attgttgttt tttagcttaa 3661 tttcttttgt tgattccttt aagttgtgta tacttctcag caaaaagaaa aaatgtttat 3721 ttacaaaaca ccgatataca tacaaactat acataaaaaa tatttattta ttcatagtct 3781 tttttttttt tgaaacatac atacgtatat aatttctttt cctattactt ccttcaaagg 3841 cagcattatt tatttgtttg tacaattaat tttaattttt tttatatata gatatgccgt 3901 aggttaggtt tagaaactaa gaaaattcca attgtaaatt ttaaatacaa catcattctc 3961 agacgttagg caatttagtc catagtgatg ccaaaataac aagagaagaa agcattgaac 4021 gccctaaagt ctttaaagaa atgataatca cgtattcaac acattattgt gtacctgcac 4081 gagaccataa gcccgtgggc ttggaacaag tgtgcacttg tgttggtgcg cccaccactg 4141 atcaaaactc tttaactctt tttgattgcc agattaccag ggcactcact ggacaagtgt 4201 tttatagttt tttcgcccat acggtgacct gtgagtaaga cttctagtct agccaacaac 4261 agcatgtttc caatcggaga gagagagaga gacctgttaa tgagatttct atgccatcca 4321 aacatcttaa cttggaccgt ttttgcccat ctacaatccc aacggatcta cattaataag 4381 taataaaatg agtgcagaat ttcaaatggc tagctttgct ccttcgaaag ttgtcgtgct 4441 ttcgacagac ggacggatat ggctaaatcg acttaaagtc tgtcagtcta gaatatatat 4501 accttatgtg tccataggcc ggaggcgacc acagaggtta tcatgtccgc cgagcgcctg 4561 ggttcaaata ccggcgcgaa cattagaaaa aattttcagc tatggttatc ccctggctaa 4621 tgctggctac atttgtatga ggtatccttc catgttgaaa cttcttcacc aagtggaaca 4681 gaagaccact tgtgctttaa ctgctaacat tgacaggtac ttggaatttt aagaagtcta 4741 aatttttgtt aaattttgtt ttctaaactt tgcagttttt tattatgtta tatttgctat 4801 tatatggaat tttttttagt ctaaagccgc ctgctcatcc ctcattaaaa attttctcca 4861 ataaacacat cagttttttg tttaattaaa aacaattacc ttcatcctca aatgcattat 4921 ttaaacatca tttgaagaaa acaagagtaa caaaaaaacc cgaaaatagt tataaaaaac 4981 ttcttatatt tatgaattga ttatatacat gtatgcaatt tagtaatttt attttacaca 5041 cacatatata tacctacata atttttttct ttaaaaattt agtttttaag aagaacaaac 5101 aaaaaaaaag aattattata tacacataca cacacacata accatagcct aggcaaggtt 5161 gaaacaaaag aaaaatatag ttttagtatt taaaaaaaaa gaatctaaaa aagaatgaac 5221 cccctcccag atgaatgatg aaaagaaatg aaacaaagaa aaggaaagga aaaatattcc 5281 atgatgagaa taagaagaag caagttaaaa ataaattatt ttaaaagaaa acggaacaag 5341 taacaaacaa agatctagtc agtgaaaata tatatttttt aaattaagtt taaatacaaa 5401 acaaaacaaa caagaagcat atatacaaag ctctgagaga gaaacatcct aatatcctta 5461 ataacgatgt ttccctgccc ctataaaaaa aactagctaa actttttttt taatatttta 5521 atttcttttc aaacatatat ttttggtttt taaagttgta tctcgtctct ttaaagaaaa 5581 aaaaaaaaaa gataatatat aaggtttttc agttctgttt ttactaattt atgaagaaac 5641 aaaaaaaaaa cacttattcc tttttgttat tttgaaaaga aaagtaagga aagcaaccta 5701 tataatccaa agattaaaat atttagtaaa attctatata aagagaagaa aaaaaataag 5761 aaagaaagaa actaccctaa agaaacacag attgtacaca gatttttcaa gaaaagaaga 5821 gaaaactttt taattaaaat ttttaaaaat ttaaaacaag atttttaagg ctaagtgcat 5881 gcttaaaagc agtgtacact tagagaaggc aaagtcagct gcccagttga ataaatttat 5941 atacaacata ttgactttaa ttgatttatt ttaatagatt tccccagaaa tctatgctat 6001 gcattaagag ctgttaataa tgacataaaa cagttctctc tgtctactga gagctttgac 6061 atccctgtgt ttgtctgcat taccattagc tgcactgttt tatcatcggc ttatgttttt 6121 gcacttggac agcttcactt ttttatcatc gtcttatgtt tttgcatttg gtcagctgca 6181 ctgttttatc gtcggttttt ggcagcttac tttgccttct ttaaaactgc tttgcagttt 6241 gaaataatag tgagaagata acacacaatt ttttgtgcaa tagctaagaa gaagcagat