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LOCUS XM_013249839 1881 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_013249839 VERSION XM_013249839.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249839.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1881 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..1881 /gene="LOC106085538" /note="protein rhomboid; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106085538" CDS 214..1419 /gene="LOC106085538" /codon_start=1 /product="protein rhomboid isoform X2" /protein_id="XP_013105293.1" /db_xref="GeneID:106085538" /translation="MATKTQRQQELQDVENGLYPQLRPGRPQTARQDTVDMEEIPLRE RTQTDPASEDRRKVKEIFDSHDTDCDGQISIHELKTLIESGLCRDIPPHVAQQILKLS DDDNNGILDFEEFYNMSKRHKWMIRNLLTSYCRMIVPPPKPLEGDQLDGAYEKQMSIC PPPLTMVIFSLIEIIMFLIDVIHFQDDPDNNRRIGESTNGPAATLFIYNPYKRYESWR FVTYMFVHVGLMHLFMNLIIQIFLGVALELVHHWWRVTLVYLAGVVAGSMGTSLTSPR IFLAGASGGVYALITAHIATIIMNWNEMEYAIVQLFVFLIFCFTDLGTSIYRHLTDQH DQIGYMAHLSGAVAGLLVGFGVLRNLEVRRWERILWWIAVIFFFALMMTGTLIHFFLP DYFPRQEYH" misc_feature 382..567 /gene="LOC106085538" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(409..411,415..417,421..423,442..444,520..522, 526..528,532..534,553..555) /gene="LOC106085538" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 841..1287 /gene="LOC106085538" /note="Rhomboid family; Region: Rhomboid; pfam01694" /db_xref="CDD:426384" polyA_site 1881 /gene="LOC106085538" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttcttttttt gttgatacgc gagcagttgc tttattgtga tattgtgaac gcggaacgat 61 ttgtcgaatt gtggtggctt gtgggaaaaa aagcaaacaa aacatgtatt aacaactata 121 cgaagtagag agaaaattat attacaagtg aaatcaacaa gaacggaaag caaaacattg 181 tttattaata aaagtttttg tcctgaattg aggatggcta ccaaaacaca aagacaacaa 241 gagctgcaag acgtggaaaa tggtctttat ccacaactac gcccaggacg gccgcagaca 301 gcccgccaag atacggttga catggaggag attcctttac gagaaaggac acaaaccgat 361 ccagcatctg aagacagacg taaagtcaag gaaatatttg acagtcacga taccgattgt 421 gatggtcaaa ttagcattca cgaattgaag acactcatag aatctggcct atgccgtgac 481 ataccacctc atgtagccca gcagattctg aaattgtccg atgatgacaa taatggaatt 541 ttggattttg aagagttcta caacatgtct aagcgtcaca aatggatgat acgaaatttg 601 ttgacctcat actgccgcat gattgtgcca ccaccgaagc ctttggaagg cgatcaatta 661 gatggagcat atgaaaagca aatgtccatt tgtccacctc cgctgacaat ggttatattc 721 tcgttaatcg agattatcat gtttctcatc gatgttatac attttcaaga tgatcccgac 781 aataatcgcc gtattggcga aagtacaaat ggtcctgccg caacattgtt catttacaat 841 ccatacaagc gctacgaatc ttggcgtttc gtcacctata tgtttgtcca tgtaggccta 901 atgcatcttt ttatgaacct catcattcaa atcttcctgg gcgtagcttt agaattggtg 961 catcattggt ggcgggtgac tttggtgtat ttagcaggtg tcgtggctgg ctccatgggc 1021 acatctctga caagtccacg catatttttg gcaggggcat cgggtggagt ttatgcactt 1081 ataacggcac acattgccac tataattatg aattggaacg aaatggaata tgccattgtt 1141 cagctttttg tctttctcat attctgtttc accgatttgg gaacttccat ttatcgccat 1201 cttaccgatc aacatgacca aattggttat atggctcatt tgtctggtgc tgttgctggc 1261 cttctagtgg gtttcggggt tcttcgaaat ttagaagtac gtcgatggga acgtattttg 1321 tggtggattg cagttatatt tttctttgct ttgatgatga ccggaactct aatacatttc 1381 tttttacccg attattttcc gagacaagaa taccactaag ttaagcagtg aaaaaacgca 1441 caatttactt ataaaacaac aaacaaaaaa taacacaaaa tgtatgtgtt tatttgttta 1501 attgccttta aaatgataac aaacaaattt ctatatttat atatatacac atatatattt 1561 gtactagcat ttacttaata cttaatttaa aaaatgtatt ttgatattca tatttatctc 1621 cacattaact aaatatttaa gttaaccaac gttcaaaagc caaagtgcct ctggatctaa 1681 caacgaaatg acaaattgct tttaagattt acgtttaatt ccatgtaagc ttagtcaaaa 1741 ttacagcaac gcatttttca atgtgctatg cttcttacat atatatatat attacctata 1801 tctgtcagtg ttccacaact aataagactt ttgtaaagaa aattttgaag aaaaaaatgt 1861 ttgcctatta tcgttaccgt a