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LOCUS XM_013249837 2034 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_013249837 VERSION XM_013249837.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249837.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2034 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2034 /gene="LOC106085538" /note="protein rhomboid; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106085538" CDS 190..1572 /gene="LOC106085538" /codon_start=1 /product="rhomboid-related protein 1 isoform X1" /protein_id="XP_013105291.1" /db_xref="GeneID:106085538" /translation="MKIHMWSTKQIIPAENNKKQTKHVLTTIRSREKIILQVKSTRTE SKTLFINKSFCPELRMATKTQRQQELQDVENGLYPQLRPGRPQTARQDTVDMEEIPLR ERTQTDPASEDRRKVKEIFDSHDTDCDGQISIHELKTLIESGLCRDIPPHVAQQILKL SDDDNNGILDFEEFYNMSKRHKWMIRNLLTSYCRMIVPPPKPLEGDQLDGAYEKQMSI CPPPLTMVIFSLIEIIMFLIDVIHFQDDPDNNRRIGESTNGPAATLFIYNPYKRYESW RFVTYMFVHVGLMHLFMNLIIQIFLGVALELVHHWWRVTLVYLAGVVAGSMGTSLTSP RIFLAGASGGVYALITAHIATIIMNWNEMEYAIVQLFVFLIFCFTDLGTSIYRHLTDQ HDQIGYMAHLSGAVAGLLVGFGVLRNLEVRRWERILWWIAVIFFFALMMTGTLIHFFL PDYFPRQEYH" misc_feature 535..720 /gene="LOC106085538" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:238008" misc_feature order(562..564,568..570,574..576,595..597,673..675, 679..681,685..687,706..708) /gene="LOC106085538" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:238008" misc_feature 994..1440 /gene="LOC106085538" /note="Rhomboid family; Region: Rhomboid; pfam01694" /db_xref="CDD:426384" polyA_site 2034 /gene="LOC106085538" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atatgtgaaa gcttaagcga gttgacacgc ggtgtgcttt ttcgtccttc cgttacgatt 61 gtgacagaga ttggtttgtg caacatttag ccaaacagct gtccgctcga catataacat 121 ataaaaagct agtggcatcc ctgtaattag tttcattgta ctcttggtag aataactaga 181 aataatggaa tgaaaataca tatgtggtca actaaacaaa taattccagc agaaaataac 241 aaaaagcaaa caaaacatgt attaacaact atacgaagta gagagaaaat tatattacaa 301 gtgaaatcaa caagaacgga aagcaaaaca ttgtttatta ataaaagttt ttgtcctgaa 361 ttgaggatgg ctaccaaaac acaaagacaa caagagctgc aagacgtgga aaatggtctt 421 tatccacaac tacgcccagg acggccgcag acagcccgcc aagatacggt tgacatggag 481 gagattcctt tacgagaaag gacacaaacc gatccagcat ctgaagacag acgtaaagtc 541 aaggaaatat ttgacagtca cgataccgat tgtgatggtc aaattagcat tcacgaattg 601 aagacactca tagaatctgg cctatgccgt gacataccac ctcatgtagc ccagcagatt 661 ctgaaattgt ccgatgatga caataatgga attttggatt ttgaagagtt ctacaacatg 721 tctaagcgtc acaaatggat gatacgaaat ttgttgacct catactgccg catgattgtg 781 ccaccaccga agcctttgga aggcgatcaa ttagatggag catatgaaaa gcaaatgtcc 841 atttgtccac ctccgctgac aatggttata ttctcgttaa tcgagattat catgtttctc 901 atcgatgtta tacattttca agatgatccc gacaataatc gccgtattgg cgaaagtaca 961 aatggtcctg ccgcaacatt gttcatttac aatccataca agcgctacga atcttggcgt 1021 ttcgtcacct atatgtttgt ccatgtaggc ctaatgcatc tttttatgaa cctcatcatt 1081 caaatcttcc tgggcgtagc tttagaattg gtgcatcatt ggtggcgggt gactttggtg 1141 tatttagcag gtgtcgtggc tggctccatg ggcacatctc tgacaagtcc acgcatattt 1201 ttggcagggg catcgggtgg agtttatgca cttataacgg cacacattgc cactataatt 1261 atgaattgga acgaaatgga atatgccatt gttcagcttt ttgtctttct catattctgt 1321 ttcaccgatt tgggaacttc catttatcgc catcttaccg atcaacatga ccaaattggt 1381 tatatggctc atttgtctgg tgctgttgct ggccttctag tgggtttcgg ggttcttcga 1441 aatttagaag tacgtcgatg ggaacgtatt ttgtggtgga ttgcagttat atttttcttt 1501 gctttgatga tgaccggaac tctaatacat ttctttttac ccgattattt tccgagacaa 1561 gaataccact aagttaagca gtgaaaaaac gcacaattta cttataaaac aacaaacaaa 1621 aaataacaca aaatgtatgt gtttatttgt ttaattgcct ttaaaatgat aacaaacaaa 1681 tttctatatt tatatatata cacatatata tttgtactag catttactta atacttaatt 1741 taaaaaatgt attttgatat tcatatttat ctccacatta actaaatatt taagttaacc 1801 aacgttcaaa agccaaagtg cctctggatc taacaacgaa atgacaaatt gcttttaaga 1861 tttacgttta attccatgta agcttagtca aaattacagc aacgcatttt tcaatgtgct 1921 atgcttctta catatatata tatattacct atatctgtca gtgttccaca actaataaga 1981 cttttgtaaa gaaaattttg aagaaaaaaa tgtttgccta ttatcgttac cgta