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LOCUS XM_013249514 5216 bp mRNA linear INV 02-SEP-2023 ACCESSION XM_013249514 VERSION XM_013249514.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249514.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5216 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5216 /gene="LOC106085308" /note="alsin homolog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106085308" CDS 227..4618 /gene="LOC106085308" /codon_start=1 /product="alsin homolog" /protein_id="XP_013104968.1" /db_xref="GeneID:106085308" /translation="MDGGEMEELPFFIFFKGSRVSIDWRENDDTKTTMTPPSMPSNGI RRICSITPQYFLLLLNNNWLYEARFDQGQMKLRLKFIRGSVQDVQYCREMSAVYLVLE NGAVVTQVLHESRHMELVVSNERQWQAITFDPLELSEEGVCIKRVCCSATGTIFVSDR CDIYALGNCGVHFSVDSHQPILLRCFKNPMEIVDLNAGDNFFVFLVRRKKEIPKEILT VREYGELPDLICSETNNTPQRNSVELSSSSLNSSLSNNSENNIQRLLNLGQTLLNTEI YTMGSLNKGLLGTGDHIKRDNIVALDKLKEIGVCSLATGRDHTVVRTIDGTFYHWGLN SQQQLTTKSQVYELSSPTEFNVNYGNLQEDQVNILEACCGDYRTVLLNTRGELFEGAK LLLHHEKDFVTLQMKDMSKQSFPLLLASSNLTIYNRRKFKREFCMVHHLLQTQTKTML SYHKSVIYIQRVTQKVLLKDMQHICDQWESVLYIVVAMLNSLEQLYRSDYDDYSQLLI VVYFREYLEIFENYAKSFCDMDSIDGFSAMQKMFQQTQSPSMQTQRTSTSSTSSLFEG SKEEFLKMFKSPLQFLPLVTQLLETIQKNHGNYNVELTSWLEFVRSNRKDMELAEYTR DFWQSNQKNSKIIHFKRKERRVILSSTTVPIGPHTFRSTPFFILFSDCLCQVGNHIVT FPLDAMWLKKEGDCGITIKTPEKIFTLLAKNQYDKDLWYDQLESSIKSILQLTEKSKI PEVRSIQYTFSIHSKYSGASVKGNFSNGVMHGKCVLKYPNGKFYSGDVIHGVIEGYGL MFLPKVGVYKGHFKNGEFCGNGTLQMREKEKYEGNFRDGKFNGHGYLQTPEYIYVGDF RDNLKWGYGVLDRLATGDKHIGMFADNKKVGPGICITAMGNYFEGLYANDELTGKTVV IFPNQFYYEGESGLNGPNGLGKYYMPKEESMETNLFTNGEDTVSGNILSGQLTGTWEN VKISSGSMEINVQFPRYPSSFGSHIVNNSQKWANLFKDFEIEIFDDLAHATSISKAIT FALWNRVISFITKQHEIENEKKPDFDIMNSGTPPSTSNSYRRDWSVTSFDNDKLSLNS SSFVGEQQTELNKSHSQSDDMLLNGWEVHKFDLLSTFGNKFKRLNAEDTENNSTFPSL MAIMENCSTTTDTFNDSALSNCDMLDDCISLQAEMELIPPFGFSELTEEDLVAIKAYL KDAFRYRYHPLKHLNDRITYAFYRSYGCWKIKPTPLLAKQAMREWESISQRMYTFIRR LFPALPEDYTMIGEQREFVSHITLLYPIVLSENIYSMLFVLYANQYSEKDELYRQNLI RAEKLTDEMLVDRLEFDSDVLAVIKTPQFAEAVKRLNELKEKYSPMAMLTVIENCMEQ LTHAYQQISRDNQRSLNADLIMPLTLVLLLRAGIHHLGAELALLDDLTDSQNFQFEMN GIRGYCLTTLKASYEHLTNKSLFEKNN" misc_feature <1049..1387 /gene="LOC106085308" /note="Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]; Region: ATS1; COG5184" /db_xref="CDD:444065" misc_feature 2153..2425 /gene="LOC106085308" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:473070" misc_feature <2489..3001 /gene="LOC106085308" /note="Uncharacterized conserved protein [Function unknown]; Region: COG4642" /db_xref="CDD:443680" misc_feature 4277..4591 /gene="LOC106085308" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" polyA_site 5216 /gene="LOC106085308" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actaaacagc tgagtattaa tcaaaagaag aaaaaaaaga aaacaaaacc aaattttcct 61 gattgcgaaa actaattatt tgtgcattag tcgatccatc ataattgata ctgtttaaga 121 tataaagtga atcaaaactg ctccacccat accaatgaaa aaataatgtg ataatactcc 181 aaagatagat aaaagataaa attccaaaaa tcctacaaac gaaacaatgg atggaggtga 241 aatggaggag ctaccgtttt ttatattttt taaaggctct cgtgtctcca tcgattggag 301 agagaatgat gatacgaaaa ccaccatgac accaccgtct atgccttcca atggaattcg 361 tcgcatatgt tctataacgc cacagtattt tctcttgttg ctaaacaaca attggttgta 421 cgaggccagg tttgatcaag ggcaaatgaa actacgactt aaatttatac ggggatctgt 481 ccaagatgtt cagtattgta gggaaatgag tgctgtctac ttggtgttgg agaatggtgc 541 tgtagttaca caagtcttgc atgaaagtcg acatatggag ttggtcgtct ccaatgaaag 601 acaatggcag gcaataactt ttgatccttt ggagttgtct gaagaaggcg tttgtataaa 661 acgtgtgtgt tgctctgcaa cgggcacaat ctttgtgtct gacagatgtg atatttatgc 721 tttgggcaat tgtggagttc atttttcggt ggacagccat cagcccatat tgcttcgttg 781 ctttaaaaat cccatggaaa ttgtggactt aaatgcgggc gataattttt ttgtatttct 841 ggtgaggaga aagaaagaaa taccaaagga aatactaaca gttcgagaat atggcgaact 901 gccagatctt atttgctcag aaaccaacaa tacaccacaa cgaaatagtg ttgaattgtc 961 ttcttcatcc ttgaactcat ctctgtcaaa taactccgaa aacaatatac aacgcttact 1021 taatctcggc caaacacttt tgaataccga gatttacact atgggctctc taaataaggg 1081 cctgctgggc acgggagatc atattaaacg tgacaacata gtggcattag ataaacttaa 1141 agaaattggt gtctgtagcc tggctacggg cagagatcat actgtggtaa gaactattga 1201 tggcaccttt taccactggg gccttaattc ccagcagcag ctgacaacaa aatctcaagt 1261 ttatgagttg agtagtccga cagaattcaa tgttaactat ggcaatctgc aagaagatca 1321 ggttaatatt ctggaagcct gctgtggcga ttacagaaca gttctattga atactcgtgg 1381 tgaacttttc gaaggcgcca aactgttatt gcaccacgag aaggattttg ttaccctaca 1441 aatgaaggat atgtcaaagc aatcttttcc cttgctgctg gcgagttcaa acctaacaat 1501 atacaatcgc agaaagttca aaagagagtt ctgcatggta caccatctat tacagacgca 1561 aactaaaact atgctaagct atcacaagag cgttatatac atccagagag taactcaaaa 1621 ggtattgttg aaggatatgc aacatatatg cgatcaatgg gaaagtgtgc tgtacatagt 1681 ggtggctatg ctaaactctt tggaacaatt atatcgctca gattatgatg attattctca 1741 actattaatt gttgtgtact tccgagagta tttagagatt tttgaaaatt atgcaaaaag 1801 tttttgtgat atggactcca ttgatggctt ctcggcaatg cagaaaatgt ttcaacaaac 1861 tcaaagtccc tccatgcaga cacaaagaac atctacatca tccacatcgt ccttattcga 1921 gggtagtaag gaagaatttt tgaaaatgtt caaatctcct ctacagtttt tgccgctggt 1981 tacccaactt ttggagacaa ttcaaaagaa tcatggcaat tataatgtgg agttgacttc 2041 ttggctggaa tttgtacgct ctaaccgcaa agacatggaa ttggctgaat acactcgaga 2101 tttttggcaa agcaatcaga aaaattccaa aattattcat ttcaaacgaa aggaaaggcg 2161 tgtgatatta agttccacca ctgtgcccat agggccccac acatttagaa gcaccccgtt 2221 ctttattctc ttttctgatt gcctgtgtca ggtgggaaac cacatagtca catttccctt 2281 ggacgccatg tggttgaaga aggaaggaga ttgtggcatt accataaaaa cccctgaaaa 2341 gatattcacc ttattggcca aaaatcaata cgacaaagat ctttggtatg atcaattgga 2401 gtcctcaata aaaagcattt tacaactaac agaaaaatcc aagattcccg aggtacgttc 2461 tatacaatac accttctcta ttcattccaa atattcggga gccagtgtaa agggcaattt 2521 ctccaatggt gtaatgcatg gcaaatgtgt attgaaatat cccaatggaa aattctattc 2581 cggcgatgtt attcatggag tcattgaagg atatggtttg atgttcttac ccaaagttgg 2641 tgtttataag ggacacttta aaaacggaga gttttgtgga aatggaactc ttcaaatgcg 2701 tgaaaaggaa aaatacgaag gcaattttcg tgacggtaaa tttaatggtc atggctattt 2761 acaaaccccc gagtatatct atgtgggcga ttttcgagat aatctcaaat ggggctatgg 2821 cgtactggat agattggcaa ctggtgacaa gcacattggt atgtttgctg ataataagaa 2881 agttggccct ggcatctgca taaccgcaat gggaaattat tttgagggtc tctatgcaaa 2941 tgatgaattg acgggaaaaa cagtggtcat atttcctaat cagttttact atgaaggcga 3001 atctggacta aatgggccaa acggtttggg caaatactat atgcccaaag aagaatcgat 3061 ggaaacaaat ctttttacaa atggagaaga tacagtcagt ggaaatattt taagtggtca 3121 gctaactgga acttgggaaa atgtgaaaat tagctccgga tctatggaaa taaatgtaca 3181 atttcccaga tatccaagct catttggtag ccacattgtc aataattctc aaaaatgggc 3241 caatttattt aaagatttcg agattgaaat ttttgatgat ctagctcatg caacaagtat 3301 ttcgaaagct ataacatttg ccctttggaa tcgtgttata tctttcataa cgaagcaaca 3361 tgaaatcgaa aatgagaaaa aacctgattt tgatataatg aactcgggta cacctccatc 3421 aacatcgaat agttacagaa gagactggag tgtaacgtca tttgataatg ataagctaag 3481 tttaaattcg tcttcgtttg ttggtgaaca acaaacagag ctcaataaat ctcattccca 3541 atcggatgat atgctgttaa atggttggga ggtccataag tttgatttgc taagtacatt 3601 tgggaacaag ttcaagcgtt tgaatgccga ggataccgag aataattcta cattccctag 3661 tttaatggcc attatggaga attgcagcac caccactgat acttttaatg atagtgcttt 3721 gagtaattgt gatatgttgg acgattgtat ctcattgcaa gctgaaatgg aattgatacc 3781 gccctttgga ttttccgaac taaccgagga ggatctagtc gccattaagg cctatctaaa 3841 ggatgcattc cgttatcgtt accacccact gaaacattta aatgatcgca ttacctatgc 3901 tttttatcgt tcttatggct gttggaaaat caaaccaaca cctcttttgg ccaaacaggc 3961 catgcgcgag tgggaatcaa tatcccagcg catgtataca tttatccgtc gtctatttcc 4021 tgccttaccc gaagattata caatgattgg cgagcaaagg gagtttgtct cccatatcac 4081 actgttgtac cccatagtat tatctgagaa catttactca atgctatttg tgctgtatgc 4141 taatcagtat agcgaaaaag atgaattata caggcaaaat ctgatacgtg ccgaaaagct 4201 aacggatgag atgttggtgg atcgtttgga gtttgatagt gatgtattgg cagtaattaa 4261 gacacctcaa tttgctgaag ctgtaaaaag gctaaatgaa ctaaaggaga aatacagtcc 4321 catggcaatg ctaactgtga tagaaaactg tatggaacaa ttaacccatg cgtatcagca 4381 aatctccaga gataatcaaa gaagcctgaa tgccgatctt ataatgcctc taactttggt 4441 tttattgctg cgggcaggaa ttcaccattt aggggccgaa ttggcattac tggatgattt 4501 gaccgatagt caaaattttc aattcgaaat gaacggcata cgaggttatt gcttgaccac 4561 tcttaaggca tcgtatgaac atcttacaaa taaatcgttg tttgagaaaa ataattagtg 4621 gcaccttagt tgttgttgtt gtagcagtgt gttgtacact gaggcggcag cccttgccga 4681 tgaaggactt catcgggtaa aaccggtacg tacaaccggc tgccttggga ttgagtggca 4741 ccttattaat aaatacaaga taatatttca aagtaacaac atatatacat atgtatgtgt 4801 gtaactacaa ctataaacta aaattggttt aatctaaaga aaaaagaata ttagtctaaa 4861 agtatatcaa cttgaaaaat gcataagggg ttgtaaaatt aattttcaaa tgtcctcacg 4921 gggaaaacat atttttatag aatttttaat tttaaccact tgtagacacc ttaactttta 4981 tttaaaattt taaataagtt ttttttttta ttttaaacag ctttttgaaa ttcatatata 5041 tctcccttgt gcatttgtta tggtgatatg tatttatgtt atatatataa ttttacacat 5101 ttcagttcca aagaattggc tgcttacacc agctttttga catggtgtaa ataagtaact 5161 cgtttattgt ttttatttgg attttttttt ataataaaac atgattgatg cagaaa