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LOCUS XM_013249427 8058 bp mRNA linear INV 02-SEP-2023 (LOC106085249), transcript variant X4, mRNA. ACCESSION XM_013249427 VERSION XM_013249427.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013249427.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8058 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..8058 /gene="LOC106085249" /note="uncharacterized LOC106085249; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:106085249" CDS 313..8004 /gene="LOC106085249" /codon_start=1 /product="uncharacterized protein LOC106085249 isoform X4" /protein_id="XP_013104881.2" /db_xref="GeneID:106085249" /translation="MTSQQYPNKTNLHTTTNSTMPSMRLSNTSNAPYTLAQQPQQQQR QQYIPPTATPQYGTPNNNTSTTNNHLVQGPFNNNQQNSWQTHSVTSQNYLPTSKMMPQ MQPPLPTVGATNAGANNNWQSGQQNYQSSNMMYQQHAGGVAPQQHQQHQQQQWPQQNS AVNQQMYDNSFNHQQQQVSNNAYQQQQQQQAAAASYFQQAAAPQPQQQQQPLQTSLTN MSQTTTTNAVNFFDNANNNNNNNQSTGDGWGDWDWNDNSTIEANESAIQHQQQQQQQQ ISTQMHHPPQSQQQTQPPPPTAVAAPPPLPAVANDHNQAFNSSNIIADSFNQQSNDTW NWNATNAAVENVPAHVENKTALAKVEQQHNDNWNWTTTNEEDTQPQQQQQQQQTVVTN DHASNDNWNWSSNETNQQQIAQTTSTVQDIKQAVQPASKSVEAAAIMPLAPPPTEFSS SAVSENHNYNTNAAPQTSTSTNIPNTVFVSQAKPVTLPSRQYASPPMGNTPVSENPPT EGTALMPPQAFQNAEEAAVSRPTNLQSPALPPPTTTVPPPAGLPPAATAAAAGNPFKR SGLAQHHRATALMPTMPQASPAVFNMPPPPPADFANPSSSSNVTLMEPENNEIPSQEN QEILAPPAAIMQPSLQPPTSTISLPNAATVAQPPNDERNQYLQTSHLSENSEDQQPEA DGLLPPPGLSRLVLGEPELEASQRMVMGTDAPVLGSNATVADVMHLEERHADGEDTAS ENAVPVISGAMGGVGGQGSPPSTSDRNLYLVPGESNVNNQQRVVTGVELQEQREIEMD GENLEDQQQQQQQQQQQNHHHQQPQQQQHHNHHQPSPQTHQTLSPEARNEPPVEGAAD IIEPSVPAPSVSQPLEQASDAHHHPHQPSKTKESHNNISSPNDDDDSDERLLNERAMD HSTAGSSKSRTKYDNERYGGRVRRSLNRYAAYASDEYVNSDGDGDYSSDREERERRER NDRRRNYREGSVRSDRGGDEDESKRNRRQQRDKRDKYYYEGEERPRAGERSKTDSRRS QRQRGYENDSRYETEESTRFDARKESSRRSMRHSEAAERNRRGDRSDQGGEYEDYPRK GQGYRSSKRSGENYESDRRDRRRGGDDYDNTIERRRRSDKHRDRDPRYNDPRYDPREY EEYRKHSSRNARDSDLEKEGGGGGGPPRSGRMHHDGRHAAAMYGGYPGGGYYDPYTAY YYQQMARNNPQAYAEWYKKYYGQHAAAVTAGSTQAMPASADTSLTAAANDGRESVHSG RSSAHNDLKDRYTHAYITQANEYHRHYHHHQQQQQHHHQQLQQHHHHQHHLQQMAFNQ THNSTMLVDEDSLNQSTSLYSGIGGGGGLSQAHSQTNLSQIHGGYYVTPSVLQTAAAA GAHATPSLYYARSDYAESRSGAISVRDPDPIASEPQRLTPCKFINEHAVVSFGSGILV TVKPKYTPHGQISNIVKLLKFKPNDETRKLFKVFPGPLVRGLTHKKTVIEFCQEQIRL GPMETTIYAKQLISNNAEKYRASYTLMWNLLILLLKQNGMVVGTDIAELLLKNQQQFA YQTPNNSMNNSLKSKSGSTSPVAEDNEAIKDDADIANNEESKEDKDQELRESSEEKMP SSSSNALSETEITEKFRNYLLYGNVNEALEWATDNNLWGHALFLASKLDRRSHANVMM KFANKLALNDPLQTLYQLMSGRSPSSVTCVQDEKWGDWRPHLSMILSNTSQKPELDRK AITTLGDSLFNRGDLYAAHFCYLMAQVGFGRYQESATQENTLQQHLPKLVLLGSSHYK QFQEFAHNEAIVMTEIYEYACSLNDDKFSIVEFQPYKFILATRLLDYGFHLKSLMYLE QISVHIARDPTKYESSFINKVYEMADRLKYYDPVLEKTIDDQQQLGNEEGDNALNTSQ QQLEEQKWLQSLRQMAQQYKIDYAVPANSAVDSQQQQVMDPSFGYQQQHIDQQFMEIN KQFSELNLQYQDQQQQQPQPQQQPTFYNPDLMQQQPQQTQNSMLATDAQQQPLSLDPY QTQNEMPAMQANEQQQTLDANQSSTTAQTDVYHQQTAAYMQPDMTSYGQNYYDPTQQQ QGLQNYNNEGGHMDATQTTDSGSYDYWAQQQQQVTTAQPYGLDEQHESPPHAQTQALE GQKSAATPKNSTNNSQGEAVRAAAATPKATLLLNNKKSQLKMKTNHNMMMHASPGHLS SQYNKAKLEKVSKLTTTILANTNSSKTNFPVKKSPEVSTKQAFNKLLEYETSSTPSNT QTTLAATATTTTPFSINNNARPTISMPKSKTYDTDDESSGKKQQAIGGGQKSTTGSEG KIMQQQTAQKNKENKNNAAGNQNSGWFGGIWNKFSLKPKNQMILPDDKNPSIVWDPEK KKWVNTDGDEQEEESFKPPPKMGDMMMMSQANLAPPQSQPQQNQMPSFMDPQQQQQQQ YVPTSLPNSASSPNPMQQQQQQQTSAQSNVTAATNPNAPGPTKTPTLQSNMFKMQRNR TLKNAYVDVFNPSGAPVNKAAENVLAPALPPAAVPQSGFFIPGGSGSTAGGVSQDNNG YQQQQQPQDTPQFYNPNQYGTGTGY" polyA_site 8058 /gene="LOC106085249" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttagttgcct gttcgcaaag agagctaaag ttttttttta aagtttttac ctgcaaatta 61 actggaatat tgtcgaaatt cttaacaaaa tttagcaaaa acaaaaagaa taatgtgtat 121 gctttcgaaa ttgctaaaaa ttccataaaa taaaagtgtt tataagcaga aaaacgtaaa 181 aaaatcaaag cccagaaaca ggtgttgccg ccaccaacgc gtccaccttt ttcctcgtcg 241 tcatctgcat catcattaac agcaacatct gtactgaggt ctcaggctac ttcgaataat 301 tcttctctct tgatgacgtc acaacaatat ccaaataaaa cgaatttaca tacgaccaca 361 aatagcacca tgccgtcaat gcgtttaagt aatacttcaa atgctcctta tacgctggca 421 caacaaccgc aacagcagca gcgtcaacag tatataccac ccactgctac accacaatat 481 ggtactccca ataacaatac cagcacaacc aacaatcatc tggtacaagg gccatttaat 541 aataatcaac agaattcgtg gcaaacacat tctgtaactt cacaaaatta tttgccaaca 601 tcaaaaatga tgccacaaat gcaacctcca ttgccaacag tgggagcaac aaatgctggg 661 gcaaataaca attggcaaag tggacagcaa aattatcaga gcagtaatat gatgtatcaa 721 cagcatgcag gtggtgtagc gccacaacaa caccagcaac atcaacagca acaatggccg 781 cagcaaaatt cggctgtcaa tcagcagatg tatgataatt cattcaatca tcagcagcaa 841 caggtcagca ataatgcgta tcaacaacaa caacagcaac aagcagctgc agcctcatat 901 tttcaacaag ctgcagcacc acaaccccaa caacagcaac aaccactaca aacatcatta 961 accaacatgt cacaaacaac aacaacaaat gcagtcaatt tctttgacaa tgccaataat 1021 aacaacaaca acaaccaatc taccggtgat ggttggggtg attgggattg gaatgataac 1081 tctactatag aagccaatga gagcgctatt caacatcagc agcagcagca gcagcagcaa 1141 atctctactc aaatgcatca tccaccacaa tcacagcaac aaactcaacc accaccccca 1201 acagcagtag ccgcaccacc accactacct gctgttgcta acgaccacaa tcaggcattt 1261 aattcttcta acattattgc tgatagtttt aatcagcaat caaatgatac ttggaattgg 1321 aatgctacca atgctgcagt tgagaatgtg ccagctcatg ttgagaataa aacggcactg 1381 gcaaaggtag agcagcagca taatgacaat tggaattgga caaccacgaa cgaggaggac 1441 actcagcctc agcagcaaca acaacaacaa caaacagttg ttacgaacga tcacgccagc 1501 aacgataatt ggaattggtc atcgaacgaa acgaatcagc aacaaattgc acaaacaaca 1561 tctacggtgc aggatatcaa gcaagctgtt cagccagctt caaaatctgt agaagccgcc 1621 gccatcatgc ccttagcacc acctccaacg gaattttctt cgagtgctgt atcggaaaat 1681 cacaactata acacaaatgc agcacctcaa acatcgacat caactaacat tccaaacaca 1741 gtatttgtgt cgcaagccaa accggtgacc ttgccctctc ggcaatatgc ctcgcctccc 1801 atgggcaata ctccggtcag tgaaaaccct cccacagagg gtactgcatt aatgcctccc 1861 caggccttcc aaaatgccga ggaggcagct gttagcagac caactaattt gcaatcacct 1921 gctttgccgc caccaacaac cactgttcct ccacccgccg gtttgcctcc tgcagcaaca 1981 gcggctgcag ctggaaatcc atttaaacgt tcgggtttgg ctcaacatca tcgtgctact 2041 gctttaatgc ccactatgcc acaagctagt cctgctgttt ttaatatgcc gccgccaccg 2101 ccagcagatt ttgcgaatcc ctcatcatcg tccaatgtaa cactgatgga gcccgaaaac 2161 aatgaaattc cctcacaaga aaatcaagaa attttggctc cccctgcagc cataatgcaa 2221 ccgtcattgc aaccaccaac ctccaccatt agtttgccaa atgctgctac agtggcacag 2281 cctcctaatg atgaacgcaa tcaatatctg cagaccagtc atctatcgga aaattccgaa 2341 gatcaacagc ctgaagcgga tggcctttta ccacctccag gtttatcgcg tttggttttg 2401 ggcgaaccag aattggaggc ctcacaaagg atggttatgg gtactgatgc gcctgtgctg 2461 ggtagtaatg ccaccgtggc agatgttatg catttggaag agcgtcatgc agatggcgag 2521 gatacagctt cagaaaatgc agtgcctgtt ataagtggtg cgatgggtgg tgttggcgga 2581 caaggttctc ccccctccac atccgatcgt aatctgtatt tggtccctgg cgaaagcaat 2641 gtcaataacc aacaacgagt tgtcactgga gtggagttgc aagagcaaag agaaatcgaa 2701 atggatggtg aaaatcttga agatcagcaa caacaacaac aacaacagca gcagcaaaac 2761 catcatcatc agcagccgca acaacagcag catcataacc atcatcagcc atctccccaa 2821 actcatcaaa ctctatcgcc tgaagctcgc aatgaacctc ctgttgaggg agccgctgac 2881 attattgagc cttctgtgcc tgcacctagc gtaagtcaac ctttggagca agcctccgat 2941 gcacatcatc atccccatca gccctcaaaa accaaggaat cgcataataa tatttcttcg 3001 cccaatgatg acgatgacag cgatgagcgc cttctcaatg aacgagccat ggaccatagc 3061 actgccggtt cttcaaagtc tcgcacgaaa tatgacaatg aacgctacgg gggtcgcgtt 3121 agacgttcct tgaatcgtta tgcagcttat gcatctgacg aatatgtgaa tagcgatggt 3181 gatggtgact attccagtga ccgcgaagaa cgtgaacgta gggaaagaaa tgatcgtcgt 3241 cgtaattatc gtgagggtag tgtacgcagt gatcgcggcg gagacgaaga cgagagcaaa 3301 cgtaatcgcc gtcagcaacg tgataaacgt gacaaatact attacgaagg cgaggaacgc 3361 ccaagggcag gcgaacgttc caagaccgac tccagacgtt cccaacggca gcggggctat 3421 gagaatgatt cacgctatga aaccgaagag tctacacgtt ttgatgcgcg caaagaatca 3481 tctcgccgca gcatgcgtca ttcggaggcc gcggagcgta atcgtcgtgg tgatcgcagt 3541 gatcaaggtg gcgaatatga ggattatcct cgcaaaggac aaggctatcg ttcttctaag 3601 cgttctggcg aaaactatga atctgatcgt agggacagaa gacgcggcgg cgatgactat 3661 gacaatacaa tcgaaagacg gcgtcgcagc gataaacatc gtgaccgtga tccccgttac 3721 aatgatcctc gctatgatcc acgcgaatat gaagaatatc gcaaacatag ttcgcgtaat 3781 gctcgtgaca gtgatttgga gaaagaaggt ggcggcggtg gaggaccacc acgttctggc 3841 agaatgcatc atgatggccg tcatgctgct gccatgtatg gtggttaccc tggcggagga 3901 tactatgatc catataccgc ctactactat caacaaatgg cacgcaacaa tccccaagcc 3961 tatgccgaat ggtataagaa atactatggc caacatgctg ctgccgtgac agctggttct 4021 acgcaggcaa tgccagccag cgcagacacc tcattgaccg ctgcagccaa tgatggacgt 4081 gaatcggtgc actctggacg cagttcagct cataatgatt taaaagatag gtatacccat 4141 gcctacataa cacaagccaa tgaatatcat cgccattacc accatcacca acaacaacaa 4201 cagcatcatc atcaacaatt gcaacaacat catcaccacc aacaccatct ccaacaaatg 4261 gcattcaatc agacacacaa ttcgaccatg ttggtggatg aggactcatt gaatcaaagc 4321 actagtttat atagtggcat tggcggcggt ggtggccttt cacaggccca ttcccaaacg 4381 aatctttcgc aaattcatgg cggttactat gtaacgccct cggtcctaca aacagcagca 4441 gcagcaggag ctcatgcaac gccatctctc tattatgcac gttctgatta tgcggaatca 4501 agatctggtg ctatatccgt gcgcgatcca gatcccatag catcggagcc acaacgttta 4561 acaccttgca aatttatcaa tgagcatgca gtggtgagtt ttggctcagg cattttggta 4621 acggtcaaac caaaatacac accacatggt cagatcagta acatagtgaa gctgttgaag 4681 tttaagccca atgatgagac cagaaaatta ttcaaagtct tcccaggacc tttggtcaga 4741 ggtttaacac acaagaaaac ggttatagaa ttttgccagg agcaaatacg tttgggaccc 4801 atggagacaa ccatatatgc caaacaattg attagcaata atgcagagaa atatagggcc 4861 tcctatacct taatgtggaa tctattgata ttgctgttga aacagaatgg gatggttgtg 4921 ggcactgaca ttgctgaatt gctattgaaa aatcaacaac aatttgccta tcaaacaccc 4981 aacaattcta tgaacaattc tctaaaatct aaatcgggta gcacttcccc tgtggcggag 5041 gacaatgagg caatcaaaga tgatgctgat attgcaaata atgaagagtc taaagaagat 5101 aaagaccaag agttacgaga atcctcggaa gaaaaaatgc cctcctccag ctcaaacgct 5161 ttgagtgaaa cagaaattac cgagaaattt agaaactatt tgttgtatgg caatgtcaat 5221 gaggccttgg aatgggccac cgataataat ttgtggggtc atgcattatt cttggcctct 5281 aaattggatc gtcgttcgca tgccaatgtt atgatgaagt ttgccaataa attggcttta 5341 aatgaccctc tgcagacgct ctatcaattg atgagtggtc gttcaccttc aagtgtgacc 5401 tgtgtacagg atgaaaaatg gggtgattgg cgtcctcatc tatccatgat tttatcgaat 5461 acttcacaaa aaccagaatt ggatcgtaag gccattacga ctttgggtga ttccctattc 5521 aatcgtggcg atttgtatgc agcccatttt tgttatctaa tggcgcaagt tggttttgga 5581 cgctatcagg agtcggcaac acaggagaat acattgcaac agcatttgcc aaaattggtt 5641 ttgttgggct cctctcacta caaacaattc caagagtttg ctcacaacga agcgattgtc 5701 atgactgaaa tctatgaata tgcctgttcc ttgaatgatg ataaattttc aattgtagag 5761 tttcagcctt ataaattcat tttggccaca cgtttattgg actatggttt ccatttgaag 5821 agtttaatgt atttggaaca aatttctgta cacattgcac gggatccaac gaaatatgag 5881 agtagtttca tcaacaaggt ctatgaaatg gcagatcgtt tgaagtacta cgatccagtc 5941 ttagaaaaaa ccatagatga tcagcaacaa ctaggcaacg aggaaggaga taatgcccta 6001 aacacctcac aacaacaatt ggaggaacaa aaatggttgc aaagtctaag gcaaatggct 6061 caacaatata aaattgatta tgctgtgcca gcgaactcgg ctgtggacag tcagcagcaa 6121 caagtgatgg atcccagttt tggttatcaa caacaacata tagatcaaca atttatggaa 6181 atcaataaac aattcagtga attgaatctg caatatcaag atcagcagca gcaacaacca 6241 caaccacaac aacagccaac attttacaat ccagacttaa tgcaacaaca accgcagcaa 6301 acccaaaata gcatgttggc cacggatgcc caacaacaac cattatcttt ggatccctat 6361 cagacacaaa acgaaatgcc tgccatgcag gccaatgaac agcaacagac attagatgcc 6421 aaccaatcat caacaacggc tcaaactgat gtttatcatc agcagacggc cgcctatatg 6481 cagcccgata tgacaagcta tggtcaaaat tattatgatc ccactcagca gcagcaagga 6541 ctacaaaact acaataatga aggcggccat atggatgcaa cacaaacgac tgatagtggc 6601 tcttatgatt attgggctca acagcaacaa caagttacta cagcacagcc ttacggcttg 6661 gatgagcagc atgaatcacc tcctcatgca caaacccaag ctttggaagg ccaaaagtca 6721 gctgccaccc ccaaaaacag caccaacaac agccaagggg aggcggtaag ggcagcagct 6781 gcaacaccta aagccacttt acttttgaat aataaaaaat cccaattgaa aatgaaaact 6841 aaccataata tgatgatgca tgcctcaccc ggtcatttga gttcccaata taataaggcc 6901 aaattggaaa aggtctcgaa attaacaacg acgatattgg ccaacaccaa cagctctaaa 6961 actaatttcc ctgttaagaa atccccagag gtgtcaacca aacaagcatt taataaatta 7021 ttagaatatg aaacctcctc aaccccctcc aacacacaga ccaccttggc agcaacagca 7081 acgactacaa ctcctttttc cataaacaat aatgcaagac caacaatatc gatgccaaaa 7141 tccaaaacct acgatacaga tgatgaaagt tcgggcaaaa agcagcaagc aattggtggg 7201 ggccaaaaat caacaacggg cagtgaaggt aaaataatgc aacaacaaac agcgcaaaag 7261 aataaggaaa ataaaaataa tgctgctgga aaccaaaatt ctggctggtt tggtggcatt 7321 tggaataagt tttccttgaa acccaaaaat caaatgattt tgcctgatga taagaatccc 7381 tctattgtct gggatcctga gaaaaagaaa tgggtcaaca ctgatggtga tgagcaagag 7441 gaggaatcgt ttaagcctcc tcccaaaatg ggtgatatga tgatgatgtc acaagcaaat 7501 cttgcgccac cacaaagtca acctcaacag aatcaaatgc caagcttcat ggatcctcaa 7561 caacaacagc agcaacaata tgtgcctaca tccctaccta attcagcgtc atcaccgaat 7621 cccatgcaac aacaacaaca acagcaaaca tcagcacaat ccaatgtgac ggcggcgacg 7681 aatccaaatg ccccaggacc tacgaaaact cccacattac agtcaaatat gtttaaaatg 7741 caaagaaatc gaactttaaa aaacgcttac gttgacgttt ttaatccctc tggtgctcct 7801 gtaaataagg ctgctgaaaa tgttctcgct cctgctttac ctcctgccgc agtgcctcaa 7861 agtggatttt tcataccagg cggctcaggg tcaacagctg gtggtgttag tcaagataat 7921 aatggctatc agcagcaaca acaaccacaa gatacgccac agttttacaa tcccaatcaa 7981 tatgggaccg gtactggtta ttaaaacaaa ggagttttat aacattttgt ttgtttgtta 8041 aagactctga tttttttt