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LOCUS XM_013249352 3395 bp mRNA linear INV 02-SEP-2023 (LOC106085224), transcript variant X2, mRNA. ACCESSION XM_013249352 VERSION XM_013249352.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3395 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..3395 /gene="LOC106085224" /note="PHD finger protein 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106085224" CDS 104..2890 /gene="LOC106085224" /codon_start=1 /product="PHD finger protein 12 isoform X2" /protein_id="XP_013104806.1" /db_xref="GeneID:106085224" /translation="MSKIDANPNAELSIMEQIQNLIKPPPTEDEKLGVRPTATKHPYY KRPGRGHNHDLCDACEEGGDLLCCDRCPSSFHLQCHDPPLTEDDIPSGQWLCHNCRMT LKTAPSTSSKSSSVERTSATPATAAVVAAAAAGVNSRPNTPSAGGDLESIPLKIRHLR KRSSSRASFCSDLSGTEKYLSKLPVGIQRALDPNKKPTPLDELIKAASILNPKQFELP RELEIHTQFPGNDKIEPIRNNGNNHKKPNYRRNSKPFELDSQGLVPLPAKTCFYCHRS CKKAPLVACDYCPLFFHQDCLDPPMTALPTGLWMCPNHVENFIDNNLLSSISATERVR LWDKFSQPFDHEAVKMDFFRRVHMKNPPFRIKVPVKSRDTIEVPPMVKYHYENPPPLL PSLRETLRYDIVKRRKCLPSAPEVISKESVAESLVKDLEALKSAKAKFREIQKELGRV EELSSSSSSSSSEDEEEPKNATAHGNDKKTSGSEAKVETTKDDNGDEVLTEKQTNKTK IKRTKRNSTSHATHLKETEIKTECETIPEEKDEKNATPQAEEKSKIDANYSCNNNAED SDEETKYDPQIDTELQYLDVELIKKLAFQRLQQLVQDHPEIVVQYQNRTAAKRIRELT QTQPAIVTAPEEQNSTGSPAVVPSEILSPNDVRRLCIMFTGETSSILAQPNSASEDMP QLHPALATAAAIVAADEEEQKYTPRLYSEQEKAYEIATRLELKLLRRKIRARAVLTPL GDILEDNRWFSNIELRSSFFMRYRSINVGYGDTNLGVDVNLSLIGYCRRISPKHATIF YDDFSKTYELINYSEYGTEVNGQLYSCDFSEPNPTPAKKLKPDDVDLQKKVQAILDKR RGIQRHYFVVDNNARMAPPPKPDCKCSSIEEVPMIKGAWEGTAILQHGTLIRFGCLAF VFSIPKLDTCNGQG" misc_feature 269..400 /gene="LOC106085224" /note="PHD finger 1 found in PHD finger protein 12 (PHF12); Region: PHD1_PHF12; cd15533" /db_xref="CDD:277008" misc_feature order(293..307,317..319,383..385) /gene="LOC106085224" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277008" misc_feature 680..796 /gene="LOC106085224" /note="PHD finger protein 12 MRG binding domain; Region: PHF12_MRG_bd; pfam16737" /db_xref="CDD:465250" misc_feature 911..1045 /gene="LOC106085224" /note="PHD finger 2 found in PHD finger protein 12 (PHF12), yeast Rco1, and similar proteins; Region: PHD2_PHF12_Rco1; cd15534" /db_xref="CDD:277009" misc_feature order(944..958,968..970,1028..1030) /gene="LOC106085224" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277009" misc_feature 2288..2857 /gene="LOC106085224" /note="forkhead associated (FHA) domain superfamily; Region: FHA; cl00062" /db_xref="CDD:469597" misc_feature order(2408..2413,2474..2479,2483..2485,2543..2548) /gene="LOC106085224" /note="phosphopeptide binding site [polypeptide binding]; other site" /db_xref="CDD:438714" ORIGIN 1 acgacccaac aacgaccgag tccttcatta tatttatttg ttaataaaat atataaaaat 61 ataaatttct tcactgcatt gttatttgaa ataggattta acaatgtcta aaattgatgc 121 taatcctaat gctgagttaa gcattatgga gcaaatacaa aatcttataa aacctccgcc 181 aacagaagat gaaaaattag gtgttcgtcc aacagcgacc aagcatccat actataaaag 241 acccggtcgg ggccataacc atgatttgtg tgatgcctgt gaagaaggag gagatttgct 301 ttgttgtgat cgctgtccat caagcttcca cttgcaatgc catgatccac cattaacgga 361 agatgatata cctagtggtc aatggttatg ccacaattgt cgcatgacat taaaaacggc 421 tccatcgact tcatcaaaat ctagttccgt tgagcgtact tccgcaacac ctgcgacagc 481 agcagttgtt gctgcagctg ctgctggagt taattcaagg cctaatactc cttccgctgg 541 cggtgatctg gagtcgatac cattgaaaat tcgtcattta cgtaaacgca gcagtagtcg 601 tgcttcattt tgtagcgatt taagtggcac agagaaatat ctatcgaaat taccagttgg 661 tatacagagg gcattagacc ccaacaagaa gccaacacct ttagatgaac taattaaggc 721 agctagtatt ttaaatccaa aacaatttga attaccaaga gaactggaaa ttcatacaca 781 atttccgggc aacgataaaa ttgaacctat acgtaacaat ggcaataatc acaaaaagcc 841 caactatcgc agaaactcta aacctttcga attggattct caaggtttgg ttccattgcc 901 agctaaaaca tgtttttact gtcaccgctc gtgcaaaaaa gcaccacttg tggcatgtga 961 ctattgccca ttattttttc atcaggattg tttggatcca ccaatgacag cattgccgac 1021 cggtttgtgg atgtgtccaa accatgtaga aaattttatt gacaacaatt tactcagcag 1081 tatttcggca actgaacggg tgcgtttatg ggacaagttt tcacagccat ttgaccacga 1141 agctgtaaaa atggacttct ttcgtcgtgt tcacatgaaa aatccaccat ttcgtattaa 1201 ggtaccagtg aaatctaggg atacaatcga agtacccccc atggttaagt atcattatga 1261 aaatcctcct cccctcttgc cgtcactgag agaaacgtta cgctatgata tcgttaagag 1321 acgcaaatgt ttgcccagtg ctccagaagt tatttccaag gaaagtgtag cagagtcatt 1381 ggttaaagac ttggaagctt taaaatcagc taaggcaaag tttagagaaa tacaaaagga 1441 acttgggcgt gtagaagaat tgagtagtag cagcagtagc agtagcagtg aagacgagga 1501 ggaaccgaaa aatgccacag ctcatgggaa tgacaaaaag actagtgggt cggaagctaa 1561 agtagagact accaaggatg ataacggcga tgaagtgttg acagaaaaac aaacaaacaa 1621 aacaaagatc aaacgcacaa aacgcaactc aacaagtcac gccactcatc tgaaggaaac 1681 agaaattaaa accgaatgtg agactatacc cgaagaaaag gatgaaaaaa atgcaacacc 1741 acaagcagaa gaaaaatcaa aaattgatgc taactacagc tgcaacaaca atgcagagga 1801 ctccgatgaa gaaacgaaat acgatcccca aatagatact gaacttcagt atttagatgt 1861 agagcttatt aagaaattgg cttttcaacg actgcagcag cttgtacaag atcatccaga 1921 aattgttgtg caatatcaaa atcgtacagc tgcgaaacgt attagagaac tgacgcagac 1981 ccaaccggca attgtaacgg cgcctgaaga acaaaattct accggatccc ccgcggtggt 2041 gccatccgaa attctttccc ccaatgacgt tagacgtttg tgcattatgt ttacgggtga 2101 gacatcatcc atattggccc aacctaattc tgcttccgaa gatatgccgc aattgcatcc 2161 cgctttagca acagcggcgg caattgttgc cgccgatgaa gaggaacaaa aatatacgcc 2221 acgcctctac tcggaacaag agaaggccta tgaaatagcc actagacttg aattaaaatt 2281 gttacgaaga aaaatacgtg cgcgagcggt tcttacgcct cttggtgata ttcttgagga 2341 caatcgttgg tttagtaaca tcgaattgcg ttcgtcattt ttcatgcgct atcgcagcat 2401 aaacgtggga tatggtgaca ccaacctggg ggtggatgtc aatctatcgt taatcggtta 2461 ttgtcgacgc atttcaccaa aacatgctac catattttat gatgattttt ccaaaacata 2521 tgaattgatc aattactctg aatacggtac ggaagtaaat ggtcaattgt attcctgcga 2581 ctttagtgaa cccaatccca cgccagctaa aaaattaaaa cctgatgatg tggacttgca 2641 aaagaaagtc caagctattc tcgacaaaag gagaggtatc caacggcatt attttgtggt 2701 tgacaacaat gctcgcatgg ctcctccgcc taagcctgac tgcaagtgtt cttccattga 2761 agaagtcccc atgattaaag gtgcctggga gggtacagca attttgcagc acgggacttt 2821 aatccgcttc ggctgcttag catttgtttt ctcaatacca aaactggaca cctgcaatgg 2881 ccagggatga ataaatgcag caattatttg cttttaacca ataaaggatg ttaacggaga 2941 gccatcatct catcttaaag tacaacaaac aaaattatac gattgatttt ggtgttttta 3001 aaaaaatatc gttttctcga ttttattttc ttatttaagc taacttttaa atcttatctt 3061 ttcatttttg accagctttt agctttgttt tagatgttta tcttagtgta gattgggaac 3121 acaatgtaca gtaaagttaa attgtatttt gcgtttcaat gtatatatca taaacaaact 3181 atgtatatgt acatagttac atatatttat atacatatat ataccaccaa accgaaatta 3241 tacggtttta tatatggacg taaaatgtga agaacagata cacacatacc ttcatactca 3301 aaatggttaa tactactttt actattgcat tatttggaat aatgtgatat taaaatatat 3361 aattaatttg taatggaaat aaaacacagt tttta